National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18     1                                  
F     24         1                              
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                 1      
Q     18                                        
R     12                                        
S     27                                        
T     15               1                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 CotedIvoire 27894 A 62 62
1 CotedIvoire 27895 T 62 62
2 CotedIvoire 27896 G 62 62
3 CotedIvoire 27897 A 62 62
4 CotedIvoire 27898 A 62 62
5 CotedIvoire 27899 A 62 62
6 CotedIvoire 27900 T 62 62
7 CotedIvoire 27901 T 62 62
8 CotedIvoire 27902 T 62 62
9 CotedIvoire 27903 C 62 62
10 CotedIvoire 27904 T 62 62
11 CotedIvoire 27905 T 62 62
12 CotedIvoire 27906 G 62 62
13 CotedIvoire 27907 T 62 62
14 CotedIvoire 27908 T 62 62
15 CotedIvoire 27909 T 62 62
16 CotedIvoire 27910 T 62 62
17 CotedIvoire 27911 C 62 62
18 CotedIvoire 27912 T 62 62
19 CotedIvoire 27913 T 62 62
20 CotedIvoire 27914 A 62 62
21 CotedIvoire 27915 G 62 62
22 CotedIvoire 27916 G 62 62
23 CotedIvoire 27917 A 62 62
24 CotedIvoire 27918 A 62 62
25 CotedIvoire 27919 T 62 62
26 CotedIvoire 27920 C 62 62
27 CotedIvoire 27921 A 62 62
28 CotedIvoire 27922 T 62 62
29 CotedIvoire 27923 C 62 62
30 CotedIvoire 27924 A 62 62
31 CotedIvoire 27925 C T 62 60 Thr11Ile
32 CotedIvoire 27926 A 62 62
33 CotedIvoire 27927 A 62 62
34 CotedIvoire 27928 C 62 62
35 CotedIvoire 27929 T 62 62
36 CotedIvoire 27930 G 62 62
37 CotedIvoire 27931 T 62 62
38 CotedIvoire 27932 A 62 62
39 CotedIvoire 27933 G 62 62
40 CotedIvoire 27934 C 62 62
41 CotedIvoire 27935 T 62 62
42 CotedIvoire 27936 G 62 62
43 CotedIvoire 27937 C 62 62
44 CotedIvoire 27938 A 62 62
45 CotedIvoire 27939 T 62 62
46 CotedIvoire 27940 T 62 62
47 CotedIvoire 27941 T 62 62
48 CotedIvoire 27942 C 62 62
49 CotedIvoire 27943 A 62 62
50 CotedIvoire 27944 C 62 62
51 CotedIvoire 27945 C 62 62
52 CotedIvoire 27946 A 62 62
53 CotedIvoire 27947 A 62 62
54 CotedIvoire 27948 G 62 62
55 CotedIvoire 27949 A 62 62
56 CotedIvoire 27950 A 62 62
57 CotedIvoire 27951 T 62 62
58 CotedIvoire 27952 G 62 62
59 CotedIvoire 27953 T 62 62
60 CotedIvoire 27954 A 62 62
61 CotedIvoire 27955 G 62 62
62 CotedIvoire 27956 T 62 62
63 CotedIvoire 27957 T 62 62
64 CotedIvoire 27958 T 62 62
65 CotedIvoire 27959 A 62 62
66 CotedIvoire 27960 C 62 62
67 CotedIvoire 27961 A 62 62
68 CotedIvoire 27962 G 62 62
69 CotedIvoire 27963 T 62 62
70 CotedIvoire 27964 C 62 62
71 CotedIvoire 27965 A 62 62
72 CotedIvoire 27966 T 62 62
73 CotedIvoire 27967 G 62 62
74 CotedIvoire 27968 T 62 62
75 CotedIvoire 27969 A 62 62
76 CotedIvoire 27970 C 62 62
77 CotedIvoire 27971 T 62 62
78 CotedIvoire 27972 C 62 62
79 CotedIvoire 27973 A 62 62
80 CotedIvoire 27974 A 62 62
81 CotedIvoire 27975 C 62 62
82 CotedIvoire 27976 A 62 62
83 CotedIvoire 27977 T 62 62
84 CotedIvoire 27978 C 62 62
85 CotedIvoire 27979 A 62 62
86 CotedIvoire 27980 A 62 62
87 CotedIvoire 27981 C 62 62
88 CotedIvoire 27982 C 62 62
89 CotedIvoire 27983 A 62 62
90 CotedIvoire 27984 T 62 62
91 CotedIvoire 27985 A 62 62
92 CotedIvoire 27986 T 62 62
93 CotedIvoire 27987 G 62 62
94 CotedIvoire 27988 T 62 62
95 CotedIvoire 27989 A 62 62
96 CotedIvoire 27990 G 62 62
97 CotedIvoire 27991 T 62 62
98 CotedIvoire 27992 T 62 62
99 CotedIvoire 27993 G 62 62
100 CotedIvoire 27994 A 62 62
101 CotedIvoire 27995 T 62 62
102 CotedIvoire 27996 G 62 62
103 CotedIvoire 27997 A 62 62
104 CotedIvoire 27998 C 62 62
105 CotedIvoire 27999 C 62 62
106 CotedIvoire 28000 C 62 62
107 CotedIvoire 28001 G 62 62
108 CotedIvoire 28002 T 62 62
109 CotedIvoire 28003 G 62 62
110 CotedIvoire 28004 T 62 62
111 CotedIvoire 28005 C 62 62
112 CotedIvoire 28006 C 62 62
113 CotedIvoire 28007 T 62 62
114 CotedIvoire 28008 A 62 62
115 CotedIvoire 28009 T 62 62
116 CotedIvoire 28010 T 62 62
117 CotedIvoire 28011 C 62 62
118 CotedIvoire 28012 A 62 62
119 CotedIvoire 28013 C 62 62
120 CotedIvoire 28014 T 62 62
121 CotedIvoire 28015 T 62 62
122 CotedIvoire 28016 C 62 62
123 CotedIvoire 28017 T 62 62
124 CotedIvoire 28018 A 62 62
125 CotedIvoire 28019 T 62 62
126 CotedIvoire 28020 T 62 62
127 CotedIvoire 28021 C 62 62
128 CotedIvoire 28022 T 62 62
129 CotedIvoire 28023 A 62 62
130 CotedIvoire 28024 A 62 62
131 CotedIvoire 28025 A 62 62
132 CotedIvoire 28026 T 62 62
133 CotedIvoire 28027 G 62 62
134 CotedIvoire 28028 G 62 62
135 CotedIvoire 28029 T 62 62
136 CotedIvoire 28030 A 62 62
137 CotedIvoire 28031 T 62 62
138 CotedIvoire 28032 A 62 62
139 CotedIvoire 28033 T 62 62
140 CotedIvoire 28034 T 62 62
141 CotedIvoire 28035 A 62 62
142 CotedIvoire 28036 G 62 62
143 CotedIvoire 28037 A 62 62
144 CotedIvoire 28038 G 62 62
145 CotedIvoire 28039 T 62 62
146 CotedIvoire 28040 A 62 62
147 CotedIvoire 28041 G 62 62
148 CotedIvoire 28042 G 62 62
149 CotedIvoire 28043 A 62 62
150 CotedIvoire 28044 G 62 62
151 CotedIvoire 28045 C 62 62
152 CotedIvoire 28046 T 62 62
153 CotedIvoire 28047 A 62 62
154 CotedIvoire 28048 G 62 62
155 CotedIvoire 28049 A 62 62
156 CotedIvoire 28050 A 62 62
157 CotedIvoire 28051 A 62 62
158 CotedIvoire 28052 A 62 62
159 CotedIvoire 28053 T 62 62
160 CotedIvoire 28054 C 62 62
161 CotedIvoire 28055 A 62 62
162 CotedIvoire 28056 G 62 62
163 CotedIvoire 28057 C 62 62
164 CotedIvoire 28058 A 62 62
165 CotedIvoire 28059 C 62 62
166 CotedIvoire 28060 C 62 62
167 CotedIvoire 28061 T 62 62
168 CotedIvoire 28062 T 62 62
169 CotedIvoire 28063 T 62 62
170 CotedIvoire 28064 A 62 62
171 CotedIvoire 28065 A 62 62
172 CotedIvoire 28066 T 62 62
173 CotedIvoire 28067 T 62 62
174 CotedIvoire 28068 G 62 62
175 CotedIvoire 28069 A 62 62
176 CotedIvoire 28070 A 62 62
177 CotedIvoire 28071 T 62 62
178 CotedIvoire 28072 T 62 62
179 CotedIvoire 28073 G 62 62
180 CotedIvoire 28074 T 62 62
181 CotedIvoire 28075 G 62 62
182 CotedIvoire 28076 C 62 62
183 CotedIvoire 28077 G 62 62
184 CotedIvoire 28078 T 62 62
185 CotedIvoire 28079 G 62 62
186 CotedIvoire 28080 G 62 62
187 CotedIvoire 28081 A 62 62
188 CotedIvoire 28082 T 62 62
189 CotedIvoire 28083 G 62 62
190 CotedIvoire 28084 A 62 62
191 CotedIvoire 28085 G 62 62
192 CotedIvoire 28086 G 62 62
193 CotedIvoire 28087 C 62 62
194 CotedIvoire 28088 T 62 62
195 CotedIvoire 28089 G 62 62
196 CotedIvoire 28090 G 62 62
197 CotedIvoire 28091 T 62 62
198 CotedIvoire 28092 T 62 62
199 CotedIvoire 28093 C 62 62
200 CotedIvoire 28094 T 62 62
201 CotedIvoire 28095 A 62 62
202 CotedIvoire 28096 A 62 62
203 CotedIvoire 28097 A 62 62
204 CotedIvoire 28098 T 62 62
205 CotedIvoire 28099 C 62 62
206 CotedIvoire 28100 A 62 62
207 CotedIvoire 28101 C A 62 61 Pro70Thr
208 CotedIvoire 28102 C 62 62
209 CotedIvoire 28103 C 62 62
210 CotedIvoire 28104 A 62 62
211 CotedIvoire 28105 T 65 65
212 CotedIvoire 28106 T 65 65
213 CotedIvoire 28107 C 65 65
214 CotedIvoire 28108 A 65 65
215 CotedIvoire 28109 G 65 65
216 CotedIvoire 28110 T 65 65
217 CotedIvoire 28111 A 65 65
218 CotedIvoire 28112 C 65 65
219 CotedIvoire 28113 A 65 65
220 CotedIvoire 28114 T 65 65
221 CotedIvoire 28115 C 65 65
222 CotedIvoire 28116 G 65 65
223 CotedIvoire 28117 A 65 65
224 CotedIvoire 28118 T 65 65
225 CotedIvoire 28119 A 65 65
226 CotedIvoire 28120 T 65 65
227 CotedIvoire 28121 C 65 65
228 CotedIvoire 28122 G 65 65
229 CotedIvoire 28123 G 65 65
230 CotedIvoire 28124 T 65 65
231 CotedIvoire 28125 A 65 65
232 CotedIvoire 28126 A 65 65
233 CotedIvoire 28127 T 65 65
234 CotedIvoire 28128 T 65 65
235 CotedIvoire 28129 A 65 65
236 CotedIvoire 28130 T 65 65
237 CotedIvoire 28131 A 65 65
238 CotedIvoire 28132 C 65 65
239 CotedIvoire 28133 A 65 65
240 CotedIvoire 28134 G 65 65
241 CotedIvoire 28135 T 65 65
242 CotedIvoire 28136 T 65 65
243 CotedIvoire 28137 T 65 65
244 CotedIvoire 28138 C 65 65
245 CotedIvoire 28139 C 65 65
246 CotedIvoire 28140 T 65 65
247 CotedIvoire 28141 G 65 65
248 CotedIvoire 28142 T 65 65
249 CotedIvoire 28143 T 65 65
250 CotedIvoire 28144 T C 64 25 Leu84Ser
251 CotedIvoire 28145 A 64 64
252 CotedIvoire 28146 C 64 64
253 CotedIvoire 28147 C 64 64
254 CotedIvoire 28148 T 64 64
255 CotedIvoire 28149 T 64 64
256 CotedIvoire 28150 T 64 64
257 CotedIvoire 28151 T 64 64
258 CotedIvoire 28152 A 64 64
259 CotedIvoire 28153 C 64 64
260 CotedIvoire 28154 A 64 64
261 CotedIvoire 28155 A 64 64
262 CotedIvoire 28156 T 64 64
263 CotedIvoire 28157 T 64 64
264 CotedIvoire 28158 A 64 64
265 CotedIvoire 28159 A 64 64
266 CotedIvoire 28160 T 64 64
267 CotedIvoire 28161 T 64 64
268 CotedIvoire 28162 G 64 64
269 CotedIvoire 28163 C 64 64
270 CotedIvoire 28164 C 64 64
271 CotedIvoire 28165 A 64 64
272 CotedIvoire 28166 G 64 64
273 CotedIvoire 28167 G 64 64
274 CotedIvoire 28168 A 64 64
275 CotedIvoire 28169 A 64 64
276 CotedIvoire 28170 C 64 64
277 CotedIvoire 28171 C 64 64
278 CotedIvoire 28172 T 64 64
279 CotedIvoire 28173 A 64 64
280 CotedIvoire 28174 A 64 64
281 CotedIvoire 28175 A 64 64
282 CotedIvoire 28176 T 64 64
283 CotedIvoire 28177 T 64 64
284 CotedIvoire 28178 G 64 64
285 CotedIvoire 28179 G 64 64
286 CotedIvoire 28180 G 64 64
287 CotedIvoire 28181 T 64 64
288 CotedIvoire 28182 A 64 64
289 CotedIvoire 28183 G 64 64
290 CotedIvoire 28184 T 64 64
291 CotedIvoire 28185 C 64 64
292 CotedIvoire 28186 T 64 64
293 CotedIvoire 28187 T 64 64
294 CotedIvoire 28188 G 64 64
295 CotedIvoire 28189 T 64 64
296 CotedIvoire 28190 A 64 64
297 CotedIvoire 28191 G 64 64
298 CotedIvoire 28192 T 64 64
299 CotedIvoire 28193 G 64 64
300 CotedIvoire 28194 C 64 64
301 CotedIvoire 28195 G 64 64
302 CotedIvoire 28196 T 64 64
303 CotedIvoire 28197 T 64 64
304 CotedIvoire 28198 G 64 64
305 CotedIvoire 28199 T 64 64
306 CotedIvoire 28200 T 64 64
307 CotedIvoire 28201 C 64 64
308 CotedIvoire 28202 G 64 64
309 CotedIvoire 28203 T 64 64
310 CotedIvoire 28204 T 64 64
311 CotedIvoire 28205 C 64 64
312 CotedIvoire 28206 T 64 64
313 CotedIvoire 28207 A 64 64
314 CotedIvoire 28208 T 64 64
315 CotedIvoire 28209 G 64 64
316 CotedIvoire 28210 A 64 64
317 CotedIvoire 28211 A C 64 61 Glu106Asp
318 CotedIvoire 28212 G 64 64
319 CotedIvoire 28213 A 64 64
320 CotedIvoire 28214 C 64 64
321 CotedIvoire 28215 T 64 64
322 CotedIvoire 28216 T 64 64
323 CotedIvoire 28217 T 64 64
324 CotedIvoire 28218 T 64 64
325 CotedIvoire 28219 T 64 64
326 CotedIvoire 28220 A 64 64
327 CotedIvoire 28221 G 64 64
328 CotedIvoire 28222 A 64 64
329 CotedIvoire 28223 G 64 64
330 CotedIvoire 28224 T 64 64
331 CotedIvoire 28225 A 64 64
332 CotedIvoire 28226 T 64 64
333 CotedIvoire 28227 C 64 64
334 CotedIvoire 28228 A 64 64
335 CotedIvoire 28229 T 64 64
336 CotedIvoire 28230 G 64 64
337 CotedIvoire 28231 A 64 64
338 CotedIvoire 28232 C 64 64
339 CotedIvoire 28233 G 64 64
340 CotedIvoire 28234 T 64 64
341 CotedIvoire 28235 T 64 64
342 CotedIvoire 28236 C 64 64
343 CotedIvoire 28237 G 64 64
344 CotedIvoire 28238 T 64 64
345 CotedIvoire 28239 G 64 64
346 CotedIvoire 28240 T 64 64
347 CotedIvoire 28241 T 64 64
348 CotedIvoire 28242 G 64 64
349 CotedIvoire 28243 T 64 64
350 CotedIvoire 28244 T 64 64
351 CotedIvoire 28245 T 64 64
352 CotedIvoire 28246 T 64 64
353 CotedIvoire 28247 A 64 64
354 CotedIvoire 28248 G 64 64
355 CotedIvoire 28249 A 64 64
356 CotedIvoire 28250 T 64 64
357 CotedIvoire 28251 T 64 64
358 CotedIvoire 28252 T 64 64
359 CotedIvoire 28253 C T 64 63 Phe120Phe
360 CotedIvoire 28254 A 64 64
361 CotedIvoire 28255 T 64 64
362 CotedIvoire 28256 C 64 64
363 CotedIvoire 28257 T 64 64
364 CotedIvoire 28258 A 64 64
365 CotedIvoire 28259 A 64 64