National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15 2                               2 3    
C     21   2     1                              
D     22       1   1                            
E 1   18           1                            
F     24         2                     1        
G     15   1                                    
H     12             2     1                   1
I     30               5   1             3      
K     15                                        
L     30         2         1           1        
M     3               1                        
N     6                       1                
P     21                         2     3        
Q 1   18             1             1            
R     12               1                        
S     27         1     1   2   1 1     2        
T     15               3                 3      
V     36                   3                    
W     3                                        
Y     21   1     1                             1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Canada 27894 A 4349 4349
1 Canada 27895 T 4349 4349
2 Canada 27896 G A 4349 4348 Met1?
3 Canada 27897 A 4349 4349
4 Canada 27898 A 4349 4349
5 Canada 27899 A 4349 4349
6 Canada 27900 T 4349 4349
7 Canada 27901 T C 4349 4347 Phe3Ser
8 Canada 27902 T 4349 4349
9 Canada 27903 C T 4349 4347 Leu4Phe
10 Canada 27904 T 4349 4349
11 Canada 27905 T 4349 4349
12 Canada 27906 G 4349 4348
13 Canada 27907 T 4349 4349
14 Canada 27908 T 4349 4349
15 Canada 27909 T 4349 4349
16 Canada 27910 T 4350 4350
17 Canada 27911 C T 4350 4344 Phe6Phe
18 Canada 27912 T 4350 4350
19 Canada 27913 T 4350 4350
20 Canada 27914 A 4350 4350
21 Canada 27915 G 4351 4351
22 Canada 27916 G 4351 4351
23 Canada 27917 A 4351 4351
24 Canada 27918 A 4351 4351
25 Canada 27919 T C 4351 4350 Ile9Thr
26 Canada 27920 C 4353 4353
27 Canada 27921 A 4353 4353
28 Canada 27922 T C 4353 4345 Ile10Thr
29 Canada 27923 C T 4353 4352 Ile10Ile
30 Canada 27924 A 4353 4353
31 Canada 27925 C T 4353 4352 Thr11Ile
32 Canada 27926 A G 4353 4347 Thr11Thr
33 Canada 27927 A 4353 4353
34 Canada 27928 C 4353 4353
35 Canada 27929 T 4353 4352
36 Canada 27930 G 4353 4352
37 Canada 27931 T 4353 4352
38 Canada 27932 A 4353 4352
39 Canada 27933 G A 4353 4350 Ala14Thr
40 Canada 27934 C 4353 4353
41 Canada 27935 T 4353 4353
42 Canada 27936 G 4353 4353
43 Canada 27937 C 4353 4352
44 Canada 27938 A 4353 4352
45 Canada 27939 T 4353 4352
46 Canada 27940 T 4353 4353
47 Canada 27941 T 4353 4353
48 Canada 27942 C T 4353 4321 His17Tyr
49 Canada 27943 A 4353 4353
50 Canada 27944 C T 4353 4351 His17His
51 Canada 27945 C 4353 4353
52 Canada 27946 A 4353 4353
53 Canada 27947 A 4353 4353
54 Canada 27948 G 4353 4353
55 Canada 27949 A 4353 4353
56 Canada 27950 A 4353 4353
57 Canada 27951 T 4353 4353
58 Canada 27952 G T 4353 4352 Cys20Phe
59 Canada 27953 T 4353 4353
60 Canada 27954 A 4354 4354
61 Canada 27955 G A 4354 4347 Ser21Asn
62 Canada 27956 T 4355 4355
63 Canada 27957 T 4355 4355
64 Canada 27958 T 4355 4355
65 Canada 27959 A 4355 4355
66 Canada 27960 C 4355 4355
67 Canada 27961 A 4355 4355
68 Canada 27962 G 4355 4355
69 Canada 27963 T 4355 4355
70 Canada 27964 C T 4356 4200 Ser24Leu
71 Canada 27965 A T 4356 4355 Ser24Ser
72 Canada 27966 T 4356 4356
73 Canada 27967 G 4356 4356
74 Canada 27968 T 4356 4355
75 Canada 27969 A 4356 4356
76 Canada 27970 C T 4356 4353 Thr26Ile
77 Canada 27971 T C 4356 4355 Thr26Thr
78 Canada 27972 C T 4356 4347 Gln27*
79 Canada 27973 A 4356 4356
80 Canada 27974 A 4356 4356
81 Canada 27975 C 4356 4356
82 Canada 27976 A T 4356 4355 His28Leu
83 Canada 27977 T 4356 4356
84 Canada 27978 C 4356 4356
85 Canada 27979 A 4356 4356
86 Canada 27980 A 4357 4357
87 Canada 27981 C 4357 4357
88 Canada 27982 C 4357 4357
89 Canada 27983 A 4357 4357
90 Canada 27984 T 4357 4357
91 Canada 27985 A 4357 4357
92 Canada 27986 T 4357 4357
93 Canada 27987 G T 4357 4354 Val32Leu
94 Canada 27988 T 4357 4357
95 Canada 27989 A 4357 4357
96 Canada 27990 G 4357 4357
97 Canada 27991 T 4357 4357
98 Canada 27992 T 4357 4357
99 Canada 27993 G 4357 4357
100 Canada 27994 A 4357 4357
101 Canada 27995 T 4357 4357
102 Canada 27996 G 4357 4357
103 Canada 27997 A 4357 4357
104 Canada 27998 C 4357 4357
105 Canada 27999 C T 4357 4355 Pro36Ser
106 Canada 28000 C 4357 4357
107 Canada 28001 G T,A 4357 4349 Pro36Pro-p.Pro36Pro
108 Canada 28002 T 4357 4357
109 Canada 28003 G 4357 4357
110 Canada 28004 T 4358 4358
111 Canada 28005 C 4358 4358
112 Canada 28006 C 4358 4358
113 Canada 28007 T 4358 4358
114 Canada 28008 A 4358 4358
115 Canada 28009 T 4358 4358
116 Canada 28010 T 4358 4358
117 Canada 28011 C 4358 4358
118 Canada 28012 A 4358 4358
119 Canada 28013 C 4359 4359
120 Canada 28014 T 4359 4359
121 Canada 28015 T 4359 4359
122 Canada 28016 C 4359 4359
123 Canada 28017 T 4359 4359
124 Canada 28018 A 4359 4359
125 Canada 28019 T 4359 4359
126 Canada 28020 T 4359 4359
127 Canada 28021 C 4359 4359
128 Canada 28022 T 4359 4359
129 Canada 28023 A 4359 4359
130 Canada 28024 A 4359 4359
131 Canada 28025 A 4359 4359
132 Canada 28026 T 4360 4360
133 Canada 28027 G 4360 4360
134 Canada 28028 G 4360 4360
135 Canada 28029 T 4360 4360
136 Canada 28030 A 4360 4360
137 Canada 28031 T 4360 4360
138 Canada 28032 A 4360 4360
139 Canada 28033 T 4360 4360
140 Canada 28034 T 4359 4359
141 Canada 28035 A 4359 4359
142 Canada 28036 G 4360 4360
143 Canada 28037 A 4360 4360
144 Canada 28038 G 4360 4360
145 Canada 28039 T 4360 4360
146 Canada 28040 A 4360 4360
147 Canada 28041 G 4360 4360
148 Canada 28042 G 4360 4360
149 Canada 28043 A 4360 4360
150 Canada 28044 G 4360 4360
151 Canada 28045 C T 4360 4357 Ala51Val
152 Canada 28046 T 4360 4358
153 Canada 28047 A 4359 4357
154 Canada 28048 G T 4359 4352 Arg52Ile
155 Canada 28049 A 4359 4357
156 Canada 28050 A 4359 4357
157 Canada 28051 A 4359 4358
158 Canada 28052 A 4359 4358
159 Canada 28053 T 4359 4358
160 Canada 28054 C T 4359 4355 Ser54Leu
161 Canada 28055 A 4359 4358
162 Canada 28056 G 4359 4358
163 Canada 28057 C T 4359 4357 Ala55Val
164 Canada 28058 A G 4359 4351 Ala55Ala
165 Canada 28059 C T 4359 4357 Pro56Ser
166 Canada 28060 C 4359 4358
167 Canada 28061 T 4359 4358
168 Canada 28062 T 4359 4358
169 Canada 28063 T 4359 4358
170 Canada 28064 A 4359 4358
171 Canada 28065 A 4359 4358
172 Canada 28066 T 4359 4358
173 Canada 28067 T 4359 4358
174 Canada 28068 G 4359 4357
175 Canada 28069 A 4359 4357
176 Canada 28070 A 4359 4357
177 Canada 28071 T 4359 4357
178 Canada 28072 T 4359 4357
179 Canada 28073 G 4359 4357
180 Canada 28074 T 4349 4347
181 Canada 28075 G 4349 4347
182 Canada 28076 C 4350 4348
183 Canada 28077 G T,C 4350 4320 Val62Leu-p.Val62Leu
184 Canada 28078 T 4350 4348
185 Canada 28079 G 4350 4348
186 Canada 28080 G 4350 4349
187 Canada 28081 A G 4350 4347 Asp63Gly
188 Canada 28082 T 4350 4347
189 Canada 28083 G T 4350 4343 Glu64*
190 Canada 28084 A 4350 4347
191 Canada 28085 G 4350 4347
192 Canada 28086 G A 4350 4257 Ala65Thr
193 Canada 28087 C T 4350 4290 Ala65Val
194 Canada 28088 T A 4351 4260 Ala65Ala
195 Canada 28089 G T 4352 4349 Gly66Cys
196 Canada 28090 G 4360 4360
197 Canada 28091 T 4360 4360
198 Canada 28092 T 4360 4360
199 Canada 28093 C T 4360 4234 Ser67Phe
200 Canada 28094 T 4361 4361
201 Canada 28095 A 4361 4361
202 Canada 28096 A 4361 4361
203 Canada 28097 A 4361 4361
204 Canada 28098 T 4361 4361
205 Canada 28099 C 4361 4361
206 Canada 28100 A 4361 4361
207 Canada 28101 C 4361 4361
208 Canada 28102 C 4361 4361
209 Canada 28103 C 4361 4361
210 Canada 28104 A 4361 4361
211 Canada 28105 T 4362 4362
212 Canada 28106 T C 4362 4360 Ile71Ile
213 Canada 28107 C 4362 4362
214 Canada 28108 A 4362 4362
215 Canada 28109 G T 4362 4361 Gln72His
216 Canada 28110 T 4362 4362
217 Canada 28111 A G 4362 4357 Tyr73Cys
218 Canada 28112 C 4362 4362
219 Canada 28113 A 4362 4362
220 Canada 28114 T C 4362 4361 Ile74Thr
221 Canada 28115 C T 4362 4360 Ile74Ile
222 Canada 28116 G 4362 4362
223 Canada 28117 A 4362 4362
224 Canada 28118 T A 4362 4359 Asp75Glu
225 Canada 28119 A 4362 4362
226 Canada 28120 T 4362 4362
227 Canada 28121 C 4362 4362
228 Canada 28122 G 4362 4362
229 Canada 28123 G 4362 4362
230 Canada 28124 T 4362 4362
231 Canada 28125 A 4362 4362
232 Canada 28126 A 4362 4362
233 Canada 28127 T 4362 4362
234 Canada 28128 T 4362 4362
235 Canada 28129 A 4362 4362
236 Canada 28130 T C 4362 4361 Tyr79Tyr
237 Canada 28131 A 4362 4362
238 Canada 28132 C 4362 4362
239 Canada 28133 A T 4362 4360 Thr80Thr
240 Canada 28134 G 4372 4372
241 Canada 28135 T 4372 4372
242 Canada 28136 T 4372 4372
243 Canada 28137 T C 4372 4370 Ser82Pro
244 Canada 28138 C 4372 4372
245 Canada 28139 C T 4372 4370 Ser82Ser
246 Canada 28140 T 4372 4372
247 Canada 28141 G 4372 4372
248 Canada 28142 T C 4372 4371 Cys83Cys
249 Canada 28143 T 4372 4372
250 Canada 28144 T C 4372 4070 Leu84Ser
251 Canada 28145 A 4372 4372
252 Canada 28146 C T 4371 4363 Pro85Ser
253 Canada 28147 C 4371 4370
254 Canada 28148 T 4371 4371
255 Canada 28149 T 4371 4371
256 Canada 28150 T 4371 4371
257 Canada 28151 T 4371 4371
258 Canada 28152 A 4371 4371
259 Canada 28153 C T 4371 4370 Thr87Ile
260 Canada 28154 A 4371 4371
261 Canada 28155 A 4371 4371
262 Canada 28156 T 4371 4371
263 Canada 28157 T 4371 4371
264 Canada 28158 A 4371 4371
265 Canada 28159 A 4371 4371
266 Canada 28160 T C 4371 4370 Asn89Asn
267 Canada 28161 T 4371 4371
268 Canada 28162 G 4371 4371
269 Canada 28163 C T 4371 4370 Cys90Cys
270 Canada 28164 C 4371 4371
271 Canada 28165 A 4371 4371
272 Canada 28166 G A 4371 4370 Gln91Gln
273 Canada 28167 G 4371 4370
274 Canada 28168 A 4371 4371
275 Canada 28169 A 4371 4371
276 Canada 28170 C 4371 4371
277 Canada 28171 C 4371 4371
278 Canada 28172 T 4371 4371
279 Canada 28173 A 4371 4371
280 Canada 28174 A 4371 4371
281 Canada 28175 A 4371 4371
282 Canada 28176 T 4371 4371
283 Canada 28177 T 4371 4371
284 Canada 28178 G C 4371 4369 Leu95Phe
285 Canada 28179 G 4371 4371
286 Canada 28180 G 4371 4371
287 Canada 28181 T 4371 4371
288 Canada 28182 A 4371 4371
289 Canada 28183 G T 4371 4367 Ser97Ile
290 Canada 28184 T 4371 4371
291 Canada 28185 C 4371 4371
292 Canada 28186 T 4371 4371
293 Canada 28187 T 4371 4371
294 Canada 28188 G 4371 4371
295 Canada 28189 T 4371 4371
296 Canada 28190 A 4371 4371
297 Canada 28191 G 4371 4371
298 Canada 28192 T 4371 4371
299 Canada 28193 G 4371 4371
300 Canada 28194 C 4371 4371
301 Canada 28195 G 4371 4371
302 Canada 28196 T 4371 4371
303 Canada 28197 T 4371 4371
304 Canada 28198 G 4371 4371
305 Canada 28199 T 4371 4371
306 Canada 28200 T 4371 4371
307 Canada 28201 C 4371 4371
308 Canada 28202 G 4371 4371
309 Canada 28203 T 4371 4371
310 Canada 28204 T 4371 4371
311 Canada 28205 C 4371 4371
312 Canada 28206 T 4371 4371
313 Canada 28207 A T 4371 4368 Tyr105Phe
314 Canada 28208 T 4371 4371
315 Canada 28209 G 4371 4371
316 Canada 28210 A 4371 4371
317 Canada 28211 A 4371 4371
318 Canada 28212 G 4371 4371
319 Canada 28213 A 4371 4371
320 Canada 28214 C 4371 4370
321 Canada 28215 T 4371 4371
322 Canada 28216 T 4371 4371
323 Canada 28217 T 4371 4371
324 Canada 28218 T C 4371 4370 Leu109Leu
325 Canada 28219 T 4371 4371
326 Canada 28220 A 4371 4371
327 Canada 28221 G 4371 4371
328 Canada 28222 A G 4371 4370 Glu110Gly
329 Canada 28223 G 4371 4371
330 Canada 28224 T 4371 4371
331 Canada 28225 A 4371 4371
332 Canada 28226 T 4371 4371
333 Canada 28227 C 4371 4371
334 Canada 28228 A 4371 4371
335 Canada 28229 T C 4371 4370 His112His
336 Canada 28230 G 4371 4371
337 Canada 28231 A 4371 4371
338 Canada 28232 C 4371 4371
339 Canada 28233 G 4371 4371
340 Canada 28234 T 4371 4371
341 Canada 28235 T 4371 4371
342 Canada 28236 C 4371 4371
343 Canada 28237 G 4371 4371
344 Canada 28238 T 4371 4371
345 Canada 28239 G 4371 4371
346 Canada 28240 T 4371 4371
347 Canada 28241 T 4371 4371
348 Canada 28242 G 4371 4371
349 Canada 28243 T 4371 4371
350 Canada 28244 T 4371 4371
351 Canada 28245 T 4371 4371
352 Canada 28246 T 4371 4371
353 Canada 28247 A 4371 4371
354 Canada 28248 G 4371 4371
355 Canada 28249 A 4371 4371
356 Canada 28250 T 4371 4371
357 Canada 28251 T 4371 4371
358 Canada 28252 T 4371 4371
359 Canada 28253 C T 4371 4341 Phe120Phe
360 Canada 28254 A C 4371 4368 Ile121Leu
361 Canada 28255 T 4369 4369
362 Canada 28256 C T,A 4369 4362 Ile121Ile-p.Ile121Ile
363 Canada 28257 T 4369 4369
364 Canada 28258 A 4369 4369
365 Canada 28259 A 4369 4369