National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12             1                          
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q 1   18                                        
R     12                                        
S     27                                        
T     15               1                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 27894 A 20 20
1 Cameroon 27895 T 20 20
2 Cameroon 27896 G 20 20
3 Cameroon 27897 A 20 20
4 Cameroon 27898 A 20 20
5 Cameroon 27899 A 20 20
6 Cameroon 27900 T 20 20
7 Cameroon 27901 T 20 20
8 Cameroon 27902 T 20 20
9 Cameroon 27903 C 20 20
10 Cameroon 27904 T 20 20
11 Cameroon 27905 T 20 20
12 Cameroon 27906 G 20 20
13 Cameroon 27907 T 20 20
14 Cameroon 27908 T 20 20
15 Cameroon 27909 T 20 20
16 Cameroon 27910 T 20 20
17 Cameroon 27911 C 20 20
18 Cameroon 27912 T 20 20
19 Cameroon 27913 T 20 20
20 Cameroon 27914 A 20 20
21 Cameroon 27915 G 20 20
22 Cameroon 27916 G 20 20
23 Cameroon 27917 A 20 20
24 Cameroon 27918 A 20 20
25 Cameroon 27919 T 20 20
26 Cameroon 27920 C 20 20
27 Cameroon 27921 A 20 20
28 Cameroon 27922 T 20 20
29 Cameroon 27923 C 20 20
30 Cameroon 27924 A 21 21
31 Cameroon 27925 C 21 21
32 Cameroon 27926 A 21 21
33 Cameroon 27927 A 21 21
34 Cameroon 27928 C 21 21
35 Cameroon 27929 T 21 21
36 Cameroon 27930 G 21 21
37 Cameroon 27931 T 21 21
38 Cameroon 27932 A 21 21
39 Cameroon 27933 G 21 21
40 Cameroon 27934 C 21 21
41 Cameroon 27935 T 21 21
42 Cameroon 27936 G 21 21
43 Cameroon 27937 C 21 21
44 Cameroon 27938 A 21 21
45 Cameroon 27939 T 21 21
46 Cameroon 27940 T 21 21
47 Cameroon 27941 T 21 21
48 Cameroon 27942 C 21 21
49 Cameroon 27943 A 21 21
50 Cameroon 27944 C T 21 19 His17His
51 Cameroon 27945 C 21 21
52 Cameroon 27946 A 21 21
53 Cameroon 27947 A 21 21
54 Cameroon 27948 G 21 21
55 Cameroon 27949 A 21 21
56 Cameroon 27950 A 21 21
57 Cameroon 27951 T 21 21
58 Cameroon 27952 G 21 21
59 Cameroon 27953 T 21 21
60 Cameroon 27954 A 21 21
61 Cameroon 27955 G 21 21
62 Cameroon 27956 T 21 21
63 Cameroon 27957 T 21 21
64 Cameroon 27958 T 21 21
65 Cameroon 27959 A 21 21
66 Cameroon 27960 C 21 21
67 Cameroon 27961 A 21 21
68 Cameroon 27962 G 21 21
69 Cameroon 27963 T 21 21
70 Cameroon 27964 C 21 21
71 Cameroon 27965 A 21 21
72 Cameroon 27966 T 21 21
73 Cameroon 27967 G 21 21
74 Cameroon 27968 T 21 21
75 Cameroon 27969 A 21 21
76 Cameroon 27970 C 21 21
77 Cameroon 27971 T 21 21
78 Cameroon 27972 C T 21 20 Gln27*
79 Cameroon 27973 A 21 21
80 Cameroon 27974 A 21 21
81 Cameroon 27975 C 21 21
82 Cameroon 27976 A 21 21
83 Cameroon 27977 T 21 21
84 Cameroon 27978 C 21 20
85 Cameroon 27979 A 21 20
86 Cameroon 27980 A 21 20
87 Cameroon 27981 C 21 20
88 Cameroon 27982 C 21 20
89 Cameroon 27983 A 21 20
90 Cameroon 27984 T 21 20
91 Cameroon 27985 A 21 20
92 Cameroon 27986 T 21 20
93 Cameroon 27987 G 21 20
94 Cameroon 27988 T 21 20
95 Cameroon 27989 A 21 20
96 Cameroon 27990 G 21 21
97 Cameroon 27991 T 21 21
98 Cameroon 27992 T 21 21
99 Cameroon 27993 G 21 21
100 Cameroon 27994 A 21 21
101 Cameroon 27995 T 21 21
102 Cameroon 27996 G 21 21
103 Cameroon 27997 A 21 21
104 Cameroon 27998 C 21 21
105 Cameroon 27999 C 21 21
106 Cameroon 28000 C 21 21
107 Cameroon 28001 G 21 21
108 Cameroon 28002 T 21 21
109 Cameroon 28003 G 21 21
110 Cameroon 28004 T 21 21
111 Cameroon 28005 C 21 21
112 Cameroon 28006 C 21 21
113 Cameroon 28007 T 21 21
114 Cameroon 28008 A 21 21
115 Cameroon 28009 T 21 21
116 Cameroon 28010 T 21 21
117 Cameroon 28011 C 21 21
118 Cameroon 28012 A 21 21
119 Cameroon 28013 C 21 21
120 Cameroon 28014 T 21 21
121 Cameroon 28015 T 21 21
122 Cameroon 28016 C 21 21
123 Cameroon 28017 T 21 21
124 Cameroon 28018 A 21 21
125 Cameroon 28019 T 21 21
126 Cameroon 28020 T 21 21
127 Cameroon 28021 C 21 21
128 Cameroon 28022 T 21 21
129 Cameroon 28023 A 21 21
130 Cameroon 28024 A 21 21
131 Cameroon 28025 A 21 21
132 Cameroon 28026 T 21 21
133 Cameroon 28027 G 21 21
134 Cameroon 28028 G 21 21
135 Cameroon 28029 T 21 21
136 Cameroon 28030 A 21 21
137 Cameroon 28031 T 21 21
138 Cameroon 28032 A 21 21
139 Cameroon 28033 T 21 21
140 Cameroon 28034 T 21 21
141 Cameroon 28035 A 21 21
142 Cameroon 28036 G 21 21
143 Cameroon 28037 A 21 21
144 Cameroon 28038 G 21 21
145 Cameroon 28039 T 21 21
146 Cameroon 28040 A 21 21
147 Cameroon 28041 G 21 21
148 Cameroon 28042 G 21 21
149 Cameroon 28043 A 21 21
150 Cameroon 28044 G 21 21
151 Cameroon 28045 C 21 21
152 Cameroon 28046 T 21 21
153 Cameroon 28047 A 21 21
154 Cameroon 28048 G 21 21
155 Cameroon 28049 A 21 21
156 Cameroon 28050 A 21 21
157 Cameroon 28051 A 21 21
158 Cameroon 28052 A 21 21
159 Cameroon 28053 T 21 21
160 Cameroon 28054 C 21 21
161 Cameroon 28055 A 21 21
162 Cameroon 28056 G 21 21
163 Cameroon 28057 C 21 21
164 Cameroon 28058 A 21 21
165 Cameroon 28059 C 21 21
166 Cameroon 28060 C 21 21
167 Cameroon 28061 T 21 21
168 Cameroon 28062 T 21 20
169 Cameroon 28063 T 21 20
170 Cameroon 28064 A 21 20
171 Cameroon 28065 A 22 22
172 Cameroon 28066 T 22 22
173 Cameroon 28067 T 22 22
174 Cameroon 28068 G 22 22
175 Cameroon 28069 A 22 22
176 Cameroon 28070 A 22 22
177 Cameroon 28071 T 22 22
178 Cameroon 28072 T 22 22
179 Cameroon 28073 G 22 22
180 Cameroon 28074 T 22 22
181 Cameroon 28075 G 22 22
182 Cameroon 28076 C 22 22
183 Cameroon 28077 G 22 22
184 Cameroon 28078 T 22 22
185 Cameroon 28079 G 22 22
186 Cameroon 28080 G 22 22
187 Cameroon 28081 A 22 22
188 Cameroon 28082 T 22 22
189 Cameroon 28083 G 22 22
190 Cameroon 28084 A 22 22
191 Cameroon 28085 G 22 22
192 Cameroon 28086 G 22 22
193 Cameroon 28087 C 22 22
194 Cameroon 28088 T 22 22
195 Cameroon 28089 G 22 22
196 Cameroon 28090 G 22 22
197 Cameroon 28091 T 22 22
198 Cameroon 28092 T 22 22
199 Cameroon 28093 C 22 22
200 Cameroon 28094 T 22 22
201 Cameroon 28095 A 22 22
202 Cameroon 28096 A 22 22
203 Cameroon 28097 A 22 22
204 Cameroon 28098 T 22 22
205 Cameroon 28099 C 22 22
206 Cameroon 28100 A 22 22
207 Cameroon 28101 C 22 22
208 Cameroon 28102 C 22 22
209 Cameroon 28103 C 22 22
210 Cameroon 28104 A 22 22
211 Cameroon 28105 T 22 22
212 Cameroon 28106 T 22 22
213 Cameroon 28107 C 22 22
214 Cameroon 28108 A 22 22
215 Cameroon 28109 G 22 22
216 Cameroon 28110 T 22 22
217 Cameroon 28111 A 22 22
218 Cameroon 28112 C 22 22
219 Cameroon 28113 A 22 22
220 Cameroon 28114 T 22 22
221 Cameroon 28115 C 22 22
222 Cameroon 28116 G 22 22
223 Cameroon 28117 A 22 22
224 Cameroon 28118 T 22 22
225 Cameroon 28119 A 22 22
226 Cameroon 28120 T 22 22
227 Cameroon 28121 C 22 22
228 Cameroon 28122 G 22 22
229 Cameroon 28123 G 22 22
230 Cameroon 28124 T 22 22
231 Cameroon 28125 A 22 22
232 Cameroon 28126 A 22 22
233 Cameroon 28127 T 22 22
234 Cameroon 28128 T 22 22
235 Cameroon 28129 A 22 22
236 Cameroon 28130 T 22 22
237 Cameroon 28131 A 22 22
238 Cameroon 28132 C 22 22
239 Cameroon 28133 A 22 22
240 Cameroon 28134 G 22 22
241 Cameroon 28135 T 22 21
242 Cameroon 28136 T 22 22
243 Cameroon 28137 T 22 22
244 Cameroon 28138 C 22 22
245 Cameroon 28139 C 22 22
246 Cameroon 28140 T 22 22
247 Cameroon 28141 G 22 22
248 Cameroon 28142 T 22 22
249 Cameroon 28143 T 22 22
250 Cameroon 28144 T 22 22
251 Cameroon 28145 A 22 22
252 Cameroon 28146 C 22 22
253 Cameroon 28147 C 22 22
254 Cameroon 28148 T 22 22
255 Cameroon 28149 T 22 22
256 Cameroon 28150 T 22 22
257 Cameroon 28151 T 22 22
258 Cameroon 28152 A 22 22
259 Cameroon 28153 C T 22 20 Thr87Ile
260 Cameroon 28154 A 22 22
261 Cameroon 28155 A 22 22
262 Cameroon 28156 T 22 22
263 Cameroon 28157 T 22 22
264 Cameroon 28158 A 22 22
265 Cameroon 28159 A 22 22
266 Cameroon 28160 T 22 22
267 Cameroon 28161 T 22 22
268 Cameroon 28162 G 22 22
269 Cameroon 28163 C 22 22
270 Cameroon 28164 C 22 22
271 Cameroon 28165 A 22 22
272 Cameroon 28166 G 22 22
273 Cameroon 28167 G 22 22
274 Cameroon 28168 A 22 22
275 Cameroon 28169 A 22 22
276 Cameroon 28170 C 22 22
277 Cameroon 28171 C 22 22
278 Cameroon 28172 T 22 22
279 Cameroon 28173 A 22 22
280 Cameroon 28174 A 22 22
281 Cameroon 28175 A 22 22
282 Cameroon 28176 T 22 22
283 Cameroon 28177 T 22 22
284 Cameroon 28178 G 22 22
285 Cameroon 28179 G 22 22
286 Cameroon 28180 G 22 22
287 Cameroon 28181 T 22 22
288 Cameroon 28182 A 22 22
289 Cameroon 28183 G 22 22
290 Cameroon 28184 T 22 22
291 Cameroon 28185 C 22 22
292 Cameroon 28186 T 22 22
293 Cameroon 28187 T 22 22
294 Cameroon 28188 G 22 22
295 Cameroon 28189 T 22 22
296 Cameroon 28190 A 22 22
297 Cameroon 28191 G 22 22
298 Cameroon 28192 T 22 22
299 Cameroon 28193 G 22 22
300 Cameroon 28194 C 22 22
301 Cameroon 28195 G 22 22
302 Cameroon 28196 T 22 22
303 Cameroon 28197 T 22 22
304 Cameroon 28198 G 22 22
305 Cameroon 28199 T 22 22
306 Cameroon 28200 T 22 22
307 Cameroon 28201 C 22 22
308 Cameroon 28202 G 22 22
309 Cameroon 28203 T 22 22
310 Cameroon 28204 T 22 22
311 Cameroon 28205 C 22 22
312 Cameroon 28206 T 22 22
313 Cameroon 28207 A 22 22
314 Cameroon 28208 T 22 22
315 Cameroon 28209 G 22 22
316 Cameroon 28210 A 22 22
317 Cameroon 28211 A 22 22
318 Cameroon 28212 G 22 22
319 Cameroon 28213 A 22 22
320 Cameroon 28214 C 22 22
321 Cameroon 28215 T 22 22
322 Cameroon 28216 T 22 22
323 Cameroon 28217 T 22 22
324 Cameroon 28218 T 22 22
325 Cameroon 28219 T 22 22
326 Cameroon 28220 A 22 22
327 Cameroon 28221 G 22 22
328 Cameroon 28222 A 22 22
329 Cameroon 28223 G 22 22
330 Cameroon 28224 T 22 22
331 Cameroon 28225 A 22 22
332 Cameroon 28226 T 22 22
333 Cameroon 28227 C 22 22
334 Cameroon 28228 A 22 22
335 Cameroon 28229 T 22 22
336 Cameroon 28230 G 22 22
337 Cameroon 28231 A 22 22
338 Cameroon 28232 C 22 22
339 Cameroon 28233 G 22 22
340 Cameroon 28234 T 21 21
341 Cameroon 28235 T 21 21
342 Cameroon 28236 C 21 21
343 Cameroon 28237 G 21 21
344 Cameroon 28238 T 21 21
345 Cameroon 28239 G 21 21
346 Cameroon 28240 T 21 21
347 Cameroon 28241 T 21 21
348 Cameroon 28242 G 21 21
349 Cameroon 28243 T 21 21
350 Cameroon 28244 T 21 21
351 Cameroon 28245 T 21 21
352 Cameroon 28246 T 21 21
353 Cameroon 28247 A 21 21
354 Cameroon 28248 G 21 21
355 Cameroon 28249 A 21 21
356 Cameroon 28250 T 21 21
357 Cameroon 28251 T 21 21
358 Cameroon 28252 T 21 21
359 Cameroon 28253 C 21 21
360 Cameroon 28254 A 21 21
361 Cameroon 28255 T 21 21
362 Cameroon 28256 C 21 21
363 Cameroon 28257 T 21 21
364 Cameroon 28258 A 21 21
365 Cameroon 28259 A 21 21