National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21   2                                    
D     22     1                                  
E     18                                        
F     24                                       1
G     15                                        
H     12                                       1
I     30               1   1                    
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                         1              
Q     18                                        
R     12                             1          
S     27                                        
T     15 1                               1      
V     36                                   1    
W     3                                        
Y     21                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 27894 A 4 4
1 Cambodia 27895 T 4 4
2 Cambodia 27896 G 4 4
3 Cambodia 27897 A 4 4
4 Cambodia 27898 A 4 4
5 Cambodia 27899 A 4 4
6 Cambodia 27900 T 4 4
7 Cambodia 27901 T 4 4
8 Cambodia 27902 T 4 4
9 Cambodia 27903 C 4 4
10 Cambodia 27904 T 4 4
11 Cambodia 27905 T 4 4
12 Cambodia 27906 G 4 4
13 Cambodia 27907 T 4 4
14 Cambodia 27908 T 4 4
15 Cambodia 27909 T 4 4
16 Cambodia 27910 T 4 4
17 Cambodia 27911 C 4 4
18 Cambodia 27912 T 4 4
19 Cambodia 27913 T 4 4
20 Cambodia 27914 A 4 4
21 Cambodia 27915 G 4 4
22 Cambodia 27916 G 4 4
23 Cambodia 27917 A 4 4
24 Cambodia 27918 A 4 4
25 Cambodia 27919 T 4 4
26 Cambodia 27920 C 4 4
27 Cambodia 27921 A C 4 2 Ile10Leu
28 Cambodia 27922 T 4 4
29 Cambodia 27923 C T 4 2 Ile10Ile
30 Cambodia 27924 A 4 4
31 Cambodia 27925 C 4 4
32 Cambodia 27926 A 4 4
33 Cambodia 27927 A 4 4
34 Cambodia 27928 C 4 4
35 Cambodia 27929 T A 4 2 Thr12Thr
36 Cambodia 27930 G 4 4
37 Cambodia 27931 T 4 4
38 Cambodia 27932 A 4 4
39 Cambodia 27933 G 4 4
40 Cambodia 27934 C 4 4
41 Cambodia 27935 T 4 4
42 Cambodia 27936 G 4 4
43 Cambodia 27937 C 4 4
44 Cambodia 27938 A 4 4
45 Cambodia 27939 T 4 4
46 Cambodia 27940 T 4 4
47 Cambodia 27941 T 4 4
48 Cambodia 27942 C 4 4
49 Cambodia 27943 A 4 4
50 Cambodia 27944 C 4 4
51 Cambodia 27945 C 4 4
52 Cambodia 27946 A 4 4
53 Cambodia 27947 A 4 4
54 Cambodia 27948 G 4 4
55 Cambodia 27949 A 4 4
56 Cambodia 27950 A 4 4
57 Cambodia 27951 T 4 4
58 Cambodia 27952 G 4 4
59 Cambodia 27953 T 4 4
60 Cambodia 27954 A 4 4
61 Cambodia 27955 G 4 4
62 Cambodia 27956 T 4 4
63 Cambodia 27957 T 4 4
64 Cambodia 27958 T 4 4
65 Cambodia 27959 A 4 4
66 Cambodia 27960 C 4 4
67 Cambodia 27961 A 4 4
68 Cambodia 27962 G 4 4
69 Cambodia 27963 T 4 4
70 Cambodia 27964 C 4 4
71 Cambodia 27965 A 4 4
72 Cambodia 27966 T 4 4
73 Cambodia 27967 G 4 4
74 Cambodia 27968 T 4 4
75 Cambodia 27969 A G 4 2 Thr26Ala
76 Cambodia 27970 C 4 4
77 Cambodia 27971 T 4 4
78 Cambodia 27972 C 4 4
79 Cambodia 27973 A 4 4
80 Cambodia 27974 A 4 4
81 Cambodia 27975 C T 4 2 His28Tyr
82 Cambodia 27976 A 4 4
83 Cambodia 27977 T 4 4
84 Cambodia 27978 C 4 4
85 Cambodia 27979 A 4 4
86 Cambodia 27980 A 4 4
87 Cambodia 27981 C 4 4
88 Cambodia 27982 C 4 4
89 Cambodia 27983 A 4 4
90 Cambodia 27984 T 4 4
91 Cambodia 27985 A 4 4
92 Cambodia 27986 T 4 4
93 Cambodia 27987 G 4 4
94 Cambodia 27988 T 4 4
95 Cambodia 27989 A 4 4
96 Cambodia 27990 G 4 4
97 Cambodia 27991 T 4 4
98 Cambodia 27992 T 4 4
99 Cambodia 27993 G 4 4
100 Cambodia 27994 A 4 4
101 Cambodia 27995 T 4 4
102 Cambodia 27996 G 4 4
103 Cambodia 27997 A 4 4
104 Cambodia 27998 C 4 4
105 Cambodia 27999 C 4 4
106 Cambodia 28000 C 4 4
107 Cambodia 28001 G 4 4
108 Cambodia 28002 T 4 4
109 Cambodia 28003 G 4 4
110 Cambodia 28004 T 4 4
111 Cambodia 28005 C 4 4
112 Cambodia 28006 C 4 4
113 Cambodia 28007 T 4 4
114 Cambodia 28008 A 4 4
115 Cambodia 28009 T 4 4
116 Cambodia 28010 T 4 4
117 Cambodia 28011 C 4 4
118 Cambodia 28012 A 4 4
119 Cambodia 28013 C 4 4
120 Cambodia 28014 T 4 4
121 Cambodia 28015 T 4 4
122 Cambodia 28016 C 4 4
123 Cambodia 28017 T 4 4
124 Cambodia 28018 A 4 4
125 Cambodia 28019 T 4 4
126 Cambodia 28020 T 4 4
127 Cambodia 28021 C 4 4
128 Cambodia 28022 T 4 4
129 Cambodia 28023 A 4 4
130 Cambodia 28024 A 4 4
131 Cambodia 28025 A 4 4
132 Cambodia 28026 T 4 4
133 Cambodia 28027 G 4 4
134 Cambodia 28028 G 4 4
135 Cambodia 28029 T 4 4
136 Cambodia 28030 A 4 4
137 Cambodia 28031 T C 4 2 Tyr46Tyr
138 Cambodia 28032 A 4 4
139 Cambodia 28033 T 4 4
140 Cambodia 28034 T 4 4
141 Cambodia 28035 A 4 4
142 Cambodia 28036 G 4 4
143 Cambodia 28037 A 4 4
144 Cambodia 28038 G 4 4
145 Cambodia 28039 T 4 4
146 Cambodia 28040 A 4 4
147 Cambodia 28041 G 4 4
148 Cambodia 28042 G 4 4
149 Cambodia 28043 A 4 4
150 Cambodia 28044 G 4 4
151 Cambodia 28045 C 4 4
152 Cambodia 28046 T 4 4
153 Cambodia 28047 A 4 4
154 Cambodia 28048 G 4 4
155 Cambodia 28049 A 4 4
156 Cambodia 28050 A 4 4
157 Cambodia 28051 A 4 4
158 Cambodia 28052 A 4 4
159 Cambodia 28053 T 4 4
160 Cambodia 28054 C 4 4
161 Cambodia 28055 A 4 4
162 Cambodia 28056 G 4 4
163 Cambodia 28057 C 4 4
164 Cambodia 28058 A 4 4
165 Cambodia 28059 C 4 4
166 Cambodia 28060 C 4 4
167 Cambodia 28061 T 4 4
168 Cambodia 28062 T 4 4
169 Cambodia 28063 T 4 4
170 Cambodia 28064 A 4 4
171 Cambodia 28065 A 4 4
172 Cambodia 28066 T 4 4
173 Cambodia 28067 T 4 4
174 Cambodia 28068 G 4 4
175 Cambodia 28069 A 4 4
176 Cambodia 28070 A 4 4
177 Cambodia 28071 T 4 4
178 Cambodia 28072 T 4 4
179 Cambodia 28073 G 4 4
180 Cambodia 28074 T 2 2
181 Cambodia 28075 G 2 2
182 Cambodia 28076 C 2 2
183 Cambodia 28077 G 2 2
184 Cambodia 28078 T 2 2
185 Cambodia 28079 G 2 2
186 Cambodia 28080 G 2 2
187 Cambodia 28081 A 2 2
188 Cambodia 28082 T 2 2
189 Cambodia 28083 G 2 2
190 Cambodia 28084 A 2 2
191 Cambodia 28085 G 2 2
192 Cambodia 28086 G 2 2
193 Cambodia 28087 C 2 2
194 Cambodia 28088 T 2 2
195 Cambodia 28089 G 2 2
196 Cambodia 28090 G 2 2
197 Cambodia 28091 T 2 2
198 Cambodia 28092 T 2 2
199 Cambodia 28093 C 2 2
200 Cambodia 28094 T 2 2
201 Cambodia 28095 A 2 2
202 Cambodia 28096 A 2 2
203 Cambodia 28097 A 2 2
204 Cambodia 28098 T 2 2
205 Cambodia 28099 C 2 2
206 Cambodia 28100 A 2 2
207 Cambodia 28101 C 2 2
208 Cambodia 28102 C 2 2
209 Cambodia 28103 C 2 2
210 Cambodia 28104 A 2 2
211 Cambodia 28105 T 2 2
212 Cambodia 28106 T 2 2
213 Cambodia 28107 C 2 2
214 Cambodia 28108 A 2 2
215 Cambodia 28109 G 2 2
216 Cambodia 28110 T 2 2
217 Cambodia 28111 A 2 2
218 Cambodia 28112 C 2 2
219 Cambodia 28113 A 2 2
220 Cambodia 28114 T 2 2
221 Cambodia 28115 C 2 2
222 Cambodia 28116 G 2 2
223 Cambodia 28117 A 2 2
224 Cambodia 28118 T 2 2
225 Cambodia 28119 A 2 2
226 Cambodia 28120 T 2 2
227 Cambodia 28121 C 2 2
228 Cambodia 28122 G 2 2
229 Cambodia 28123 G 2 2
230 Cambodia 28124 T 2 2
231 Cambodia 28125 A 2 2
232 Cambodia 28126 A 2 2
233 Cambodia 28127 T 2 2
234 Cambodia 28128 T 2 2
235 Cambodia 28129 A 2 2
236 Cambodia 28130 T 2 2
237 Cambodia 28131 A 2 2
238 Cambodia 28132 C 2 2
239 Cambodia 28133 A 2 2
240 Cambodia 28134 G 4 4
241 Cambodia 28135 T 4 4
242 Cambodia 28136 T 4 4
243 Cambodia 28137 T 4 4
244 Cambodia 28138 C 4 4
245 Cambodia 28139 C 4 4
246 Cambodia 28140 T 4 4
247 Cambodia 28141 G 4 4
248 Cambodia 28142 T C 4 2 Cys83Cys
249 Cambodia 28143 T 4 4
250 Cambodia 28144 T C 4 1 Leu84Ser
251 Cambodia 28145 A 4 4
252 Cambodia 28146 C 4 4
253 Cambodia 28147 C 4 4
254 Cambodia 28148 T C 4 2 Pro85Pro
255 Cambodia 28149 T 4 4
256 Cambodia 28150 T 4 4
257 Cambodia 28151 T 4 4
258 Cambodia 28152 A 4 4
259 Cambodia 28153 C 4 4
260 Cambodia 28154 A 4 4
261 Cambodia 28155 A 4 4
262 Cambodia 28156 T 4 4
263 Cambodia 28157 T 4 4
264 Cambodia 28158 A 4 4
265 Cambodia 28159 A 4 4
266 Cambodia 28160 T 4 4
267 Cambodia 28161 T 4 4
268 Cambodia 28162 G 4 4
269 Cambodia 28163 C T 4 2 Cys90Cys
270 Cambodia 28164 C 4 4
271 Cambodia 28165 A 4 4
272 Cambodia 28166 G 4 4
273 Cambodia 28167 G 4 4
274 Cambodia 28168 A 4 4
275 Cambodia 28169 A 4 4
276 Cambodia 28170 C 4 4
277 Cambodia 28171 C 4 4
278 Cambodia 28172 T 4 4
279 Cambodia 28173 A 4 4
280 Cambodia 28174 A 4 4
281 Cambodia 28175 A 4 4
282 Cambodia 28176 T 4 4
283 Cambodia 28177 T 4 4
284 Cambodia 28178 G 4 4
285 Cambodia 28179 G 4 4
286 Cambodia 28180 G 4 4
287 Cambodia 28181 T 4 4
288 Cambodia 28182 A 4 4
289 Cambodia 28183 G 4 4
290 Cambodia 28184 T 4 4
291 Cambodia 28185 C 4 4
292 Cambodia 28186 T 4 4
293 Cambodia 28187 T 4 4
294 Cambodia 28188 G 4 4
295 Cambodia 28189 T 4 4
296 Cambodia 28190 A 4 4
297 Cambodia 28191 G 4 4
298 Cambodia 28192 T 4 4
299 Cambodia 28193 G A 4 2 Val100Val
300 Cambodia 28194 C 4 4
301 Cambodia 28195 G 4 4
302 Cambodia 28196 T G 4 2 Arg101Arg
303 Cambodia 28197 T 4 4
304 Cambodia 28198 G 4 4
305 Cambodia 28199 T 4 4
306 Cambodia 28200 T 4 4
307 Cambodia 28201 C 4 4
308 Cambodia 28202 G 4 4
309 Cambodia 28203 T 4 4
310 Cambodia 28204 T A 4 2 Phe104Tyr
311 Cambodia 28205 C 4 4
312 Cambodia 28206 T 4 4
313 Cambodia 28207 A 4 4
314 Cambodia 28208 T 4 4
315 Cambodia 28209 G 4 4
316 Cambodia 28210 A 4 4
317 Cambodia 28211 A 4 4
318 Cambodia 28212 G 4 4
319 Cambodia 28213 A 4 4
320 Cambodia 28214 C 4 4
321 Cambodia 28215 T 4 4
322 Cambodia 28216 T 4 4
323 Cambodia 28217 T 4 4
324 Cambodia 28218 T 4 4
325 Cambodia 28219 T 4 4
326 Cambodia 28220 A 4 4
327 Cambodia 28221 G 4 4
328 Cambodia 28222 A 4 4
329 Cambodia 28223 G 4 4
330 Cambodia 28224 T 4 4
331 Cambodia 28225 A 4 4
332 Cambodia 28226 T 4 4
333 Cambodia 28227 C 4 4
334 Cambodia 28228 A 4 4
335 Cambodia 28229 T 4 4
336 Cambodia 28230 G 4 4
337 Cambodia 28231 A 4 4
338 Cambodia 28232 C T 4 2 Asp113Asp
339 Cambodia 28233 G 4 4
340 Cambodia 28234 T 4 4
341 Cambodia 28235 T 4 4
342 Cambodia 28236 C 4 4
343 Cambodia 28237 G 4 4
344 Cambodia 28238 T 4 4
345 Cambodia 28239 G 4 4
346 Cambodia 28240 T 4 4
347 Cambodia 28241 T 4 4
348 Cambodia 28242 G 4 4
349 Cambodia 28243 T 4 4
350 Cambodia 28244 T 4 4
351 Cambodia 28245 T 4 4
352 Cambodia 28246 T 4 4
353 Cambodia 28247 A 4 4
354 Cambodia 28248 G 4 4
355 Cambodia 28249 A 4 4
356 Cambodia 28250 T 4 4
357 Cambodia 28251 T 4 4
358 Cambodia 28252 T 4 4
359 Cambodia 28253 C 4 4
360 Cambodia 28254 A 4 4
361 Cambodia 28255 T 4 4
362 Cambodia 28256 C 4 4
363 Cambodia 28257 T 4 4
364 Cambodia 28258 A 4 4
365 Cambodia 28259 A 4 4