National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15 1   1                         2   3    
C     21         1                              
D     22     1     1           1               2
E 1   18                 2                      
F     24         1         1                    
G     15                                        
H     12             1     1   1     1         1
I     30         2     1   1 1           3 2    
K 1   15                                        
L     30         1         2           1        
M     3                                        
N     6                                        
P     21                   1     2   1 2        
Q 2   18                         1              
R     12             1 1                        
S     27         1         1     1     1        
T     15               2                        
V     36                   1 1             2    
W     3                   1           1        
Y     21   1                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Brazil 27894 A 2098 2098
1 Brazil 27895 T 2098 2098
2 Brazil 27896 G 2098 2098
3 Brazil 27897 A 2098 2098
4 Brazil 27898 A 2098 2098
5 Brazil 27899 A 2098 2098
6 Brazil 27900 T C 2098 2097 Phe3Leu
7 Brazil 27901 T 2099 2099
8 Brazil 27902 T 2099 2099
9 Brazil 27903 C 2099 2099
10 Brazil 27904 T 2107 2107
11 Brazil 27905 T 2107 2107
12 Brazil 27906 G 2107 2106
13 Brazil 27907 T 2107 2107
14 Brazil 27908 T 2107 2107
15 Brazil 27909 T 2107 2107
16 Brazil 27910 T 2107 2107
17 Brazil 27911 C 2107 2107
18 Brazil 27912 T 2107 2107
19 Brazil 27913 T 2107 2107
20 Brazil 27914 A 2107 2107
21 Brazil 27915 G 2107 2107
22 Brazil 27916 G 2107 2107
23 Brazil 27917 A 2108 2108
24 Brazil 27918 A 2109 2109
25 Brazil 27919 T 2110 2110
26 Brazil 27920 C T 2110 2108 Ile9Ile
27 Brazil 27921 A 2111 2111
28 Brazil 27922 T 2112 2112
29 Brazil 27923 C 2112 2112
30 Brazil 27924 A 2113 2113
31 Brazil 27925 C T 2113 2112 Thr11Ile
32 Brazil 27926 A 2113 2113
33 Brazil 27927 A 2113 2113
34 Brazil 27928 C 2113 2113
35 Brazil 27929 T 2113 2113
36 Brazil 27930 G 2114 2114
37 Brazil 27931 T 2115 2115
38 Brazil 27932 A 2116 2116
39 Brazil 27933 G 2116 2116
40 Brazil 27934 C 2116 2115
41 Brazil 27935 T C 2116 2114 Ala14Ala
42 Brazil 27936 G 2116 2115
43 Brazil 27937 C 2116 2115
44 Brazil 27938 A 2116 2115
45 Brazil 27939 T 2116 2115
46 Brazil 27940 T 2116 2115
47 Brazil 27941 T 2116 2115
48 Brazil 27942 C A 2116 2114 His17Asn
49 Brazil 27943 A 2116 2115
50 Brazil 27944 C T 2116 2114 His17His
51 Brazil 27945 C T 2116 2113 Gln18*
52 Brazil 27946 A 2116 2115
53 Brazil 27947 A 2116 2115
54 Brazil 27948 G A 2116 2114 Glu19Lys
55 Brazil 27949 A 2116 2115
56 Brazil 27950 A 2116 2115
57 Brazil 27951 T 2116 2115
58 Brazil 27952 G 2116 2115
59 Brazil 27953 T 2116 2115
60 Brazil 27954 A 2117 2116
61 Brazil 27955 G 2117 2116
62 Brazil 27956 T 2117 2116
63 Brazil 27957 T 2117 2116
64 Brazil 27958 T 2117 2116
65 Brazil 27959 A 2117 2116
66 Brazil 27960 C 2117 2116
67 Brazil 27961 A 2118 2116
68 Brazil 27962 G 2118 2116
69 Brazil 27963 T 2119 2117
70 Brazil 27964 C 2119 2118
71 Brazil 27965 A 2121 2120
72 Brazil 27966 T 2121 2121
73 Brazil 27967 G T 2121 2119 Cys25Phe
74 Brazil 27968 T 2122 2121
75 Brazil 27969 A 2122 2121
76 Brazil 27970 C T 2122 2118 Thr26Ile
77 Brazil 27971 T 2122 2120
78 Brazil 27972 C T 2122 2108 Gln27*
79 Brazil 27973 A 2122 2120
80 Brazil 27974 A 2123 2121
81 Brazil 27975 C 2123 2121
82 Brazil 27976 A G,T 2123 2112 His28Arg-p.His28Leu
83 Brazil 27977 T 2123 2122
84 Brazil 27978 C 2123 2122
85 Brazil 27979 A 2123 2122
86 Brazil 27980 A 2123 2122
87 Brazil 27981 C 2124 2123
88 Brazil 27982 C 2124 2123
89 Brazil 27983 A 2124 2123
90 Brazil 27984 T 2124 2123
91 Brazil 27985 A 2124 2123
92 Brazil 27986 T C 2124 2122 Tyr31Tyr
93 Brazil 27987 G 2124 2123
94 Brazil 27988 T 2124 2122
95 Brazil 27989 A G 2124 2121 Val32Val
96 Brazil 27990 G 2124 2122
97 Brazil 27991 T 2124 2122
98 Brazil 27992 T 2124 2122
99 Brazil 27993 G T 2124 2121 Asp34Tyr
100 Brazil 27994 A 2124 2123
101 Brazil 27995 T 2125 2124
102 Brazil 27996 G T 2125 2123 Asp35Tyr
103 Brazil 27997 A G 2125 2123 Asp35Gly
104 Brazil 27998 C T 2125 2122 Asp35Asp
105 Brazil 27999 C T 2125 2123 Pro36Ser
106 Brazil 28000 C T 2125 2123 Pro36Leu
107 Brazil 28001 G T 2125 2122 Pro36Pro
108 Brazil 28002 T 2125 2124
109 Brazil 28003 G 2125 2124
110 Brazil 28004 T 2125 2124
111 Brazil 28005 C T 2125 2123 Pro38Ser
112 Brazil 28006 C G 2125 2123 Pro38Arg
113 Brazil 28007 T 2125 2124
114 Brazil 28008 A 2125 2124
115 Brazil 28009 T C 2125 2119 Ile39Thr
116 Brazil 28010 T G 2125 2124 Ile39Met
117 Brazil 28011 C T 2125 2124 His40Tyr
118 Brazil 28012 A 2125 2124
119 Brazil 28013 C 2125 2124
120 Brazil 28014 T 2125 2123
121 Brazil 28015 T 2125 2124
122 Brazil 28016 C 2125 2125
123 Brazil 28017 T 2125 2125
124 Brazil 28018 A 2125 2125
125 Brazil 28019 T 2125 2124
126 Brazil 28020 T 2125 2125
127 Brazil 28021 C 2125 2125
128 Brazil 28022 T 2125 2125
129 Brazil 28023 A 2125 2125
130 Brazil 28024 A 2125 2125
131 Brazil 28025 A 2125 2125
132 Brazil 28026 T 2125 2125
133 Brazil 28027 G C,T 2125 2122 Trp45Ser-p.Trp45Leu
134 Brazil 28028 G 2125 2125
135 Brazil 28029 T 2125 2125
136 Brazil 28030 A 2125 2125
137 Brazil 28031 T 2125 2125
138 Brazil 28032 A 2125 2125
139 Brazil 28033 T 2125 2125
140 Brazil 28034 T 2125 2125
141 Brazil 28035 A 2125 2125
142 Brazil 28036 G 2125 2125
143 Brazil 28037 A 2126 2124
144 Brazil 28038 G 2126 2124
145 Brazil 28039 T 2126 2124
146 Brazil 28040 A 2126 2124
147 Brazil 28041 G 2126 2123
148 Brazil 28042 G 2126 2123
149 Brazil 28043 A 2126 2123
150 Brazil 28044 G T 2126 2122 Ala51Ser
151 Brazil 28045 C T 2126 2122 Ala51Val
152 Brazil 28046 T 2127 2124
153 Brazil 28047 A 2127 2124
154 Brazil 28048 G T 2128 2113 Arg52Ile
155 Brazil 28049 A 2129 2126
156 Brazil 28050 A 2129 2125
157 Brazil 28051 A 2129 2125
158 Brazil 28052 A 2130 2126
159 Brazil 28053 T 2130 2126
160 Brazil 28054 C T 2130 2125 Ser54Leu
161 Brazil 28055 A 2131 2127
162 Brazil 28056 G 2131 2127
163 Brazil 28057 C T 2131 2126 Ala55Val
164 Brazil 28058 A 2132 2128
165 Brazil 28059 C 2133 2128
166 Brazil 28060 C 2133 2128
167 Brazil 28061 T 2133 2128
168 Brazil 28062 T 2133 2128
169 Brazil 28063 T 2133 2128
170 Brazil 28064 A 2134 2130
171 Brazil 28065 A 2134 2129
172 Brazil 28066 T 2134 2130
173 Brazil 28067 T 2134 2130
174 Brazil 28068 G 2134 2130
175 Brazil 28069 A 2136 2131
176 Brazil 28070 A 2136 2130
177 Brazil 28071 T 2137 2133
178 Brazil 28072 T 2137 2133
179 Brazil 28073 G 2140 2136
180 Brazil 28074 T 2138 2135
181 Brazil 28075 G 2139 2136
182 Brazil 28076 C 2140 2135
183 Brazil 28077 G T,A 2140 2127 Val62Leu-p.Val62Met
184 Brazil 28078 T 2140 2135
185 Brazil 28079 G T 2141 2134 Val62Val
186 Brazil 28080 G 2141 2135
187 Brazil 28081 A 2143 2138
188 Brazil 28082 T 2145 2140
189 Brazil 28083 G 2145 2141
190 Brazil 28084 A 2145 2141
191 Brazil 28085 G 2145 2141
192 Brazil 28086 G T 2146 2142 Ala65Ser
193 Brazil 28087 C T,A 2150 2142 Ala65Val-p.Ala65Asp
194 Brazil 28088 T 2152 2149
195 Brazil 28089 G 2153 2150
196 Brazil 28090 G 2156 2152
197 Brazil 28091 T 2158 2156
198 Brazil 28092 T 2158 2157
199 Brazil 28093 C T 2158 2141 Ser67Phe
200 Brazil 28094 T 2158 2157
201 Brazil 28095 A T 2158 2156 Lys68*
202 Brazil 28096 A 2158 2158
203 Brazil 28097 A 2158 2158
204 Brazil 28098 T C 2158 2157 Ser69Pro
205 Brazil 28099 C 2158 2158
206 Brazil 28100 A 2158 2158
207 Brazil 28101 C 2158 2158
208 Brazil 28102 C 2158 2158
209 Brazil 28103 C 2158 2158
210 Brazil 28104 A 2158 2158
211 Brazil 28105 T 2163 2163
212 Brazil 28106 T 2163 2163
213 Brazil 28107 C 2163 2163
214 Brazil 28108 A C 2163 2152 Gln72Pro
215 Brazil 28109 G 2163 2163
216 Brazil 28110 T 2163 2163
217 Brazil 28111 A G 2163 2152 Tyr73Cys
218 Brazil 28112 C 2163 2163
219 Brazil 28113 A G 2163 2161 Ile74Val
220 Brazil 28114 T 2163 2163
221 Brazil 28115 C 2163 2163
222 Brazil 28116 G 2163 2163
223 Brazil 28117 A 2163 2163
224 Brazil 28118 T 2163 2163
225 Brazil 28119 A T,G 2163 2161 Ile76Phe-p.Ile76Val
226 Brazil 28120 T C 2163 2162 Ile76Thr
227 Brazil 28121 C 2163 2163
228 Brazil 28122 G 2163 2163
229 Brazil 28123 G 2163 2163
230 Brazil 28124 T 2163 2163
231 Brazil 28125 A 2163 2163
232 Brazil 28126 A 2163 2163
233 Brazil 28127 T 2163 2163
234 Brazil 28128 T 2163 2163
235 Brazil 28129 A 2163 2163
236 Brazil 28130 T 2163 2163
237 Brazil 28131 A 2163 2163
238 Brazil 28132 C 2163 2163
239 Brazil 28133 A 2163 2163
240 Brazil 28134 G 2166 2166
241 Brazil 28135 T 2166 2166
242 Brazil 28136 T 2166 2166
243 Brazil 28137 T 2166 2166
244 Brazil 28138 C 2166 2166
245 Brazil 28139 C 2166 2166
246 Brazil 28140 T 2166 2166
247 Brazil 28141 G 2166 2166
248 Brazil 28142 T 2166 2166
249 Brazil 28143 T 2166 2166
250 Brazil 28144 T C 2166 2160 Leu84Ser
251 Brazil 28145 A 2166 2166
252 Brazil 28146 C 2166 2166
253 Brazil 28147 C 2166 2166
254 Brazil 28148 T C 2166 2164 Pro85Pro
255 Brazil 28149 T 2166 2166
256 Brazil 28150 T 2166 2166
257 Brazil 28151 T 2166 2166
258 Brazil 28152 A 2166 2166
259 Brazil 28153 C 2166 2166
260 Brazil 28154 A 2166 2166
261 Brazil 28155 A T 2166 2163 Ile88Phe
262 Brazil 28156 T 2166 2166
263 Brazil 28157 T 2166 2166
264 Brazil 28158 A 2166 2166
265 Brazil 28159 A 2166 2166
266 Brazil 28160 T 2166 2166
267 Brazil 28161 T 2166 2166
268 Brazil 28162 G 2166 2166
269 Brazil 28163 C 2166 2166
270 Brazil 28164 C 2166 2166
271 Brazil 28165 A 2166 2166
272 Brazil 28166 G 2166 2166
273 Brazil 28167 G A 2166 2135 Glu92Lys
274 Brazil 28168 A 2165 2165
275 Brazil 28169 A 2165 2165
276 Brazil 28170 C 2165 2165
277 Brazil 28171 C 2165 2165
278 Brazil 28172 T 2165 2165
279 Brazil 28173 A 2165 2165
280 Brazil 28174 A 2165 2165
281 Brazil 28175 A 2165 2165
282 Brazil 28176 T 2165 2165
283 Brazil 28177 T 2165 2165
284 Brazil 28178 G T 2165 2164 Leu95Phe
285 Brazil 28179 G 2165 2165
286 Brazil 28180 G 2165 2165
287 Brazil 28181 T 2165 2165
288 Brazil 28182 A 2165 2165
289 Brazil 28183 G 2165 2165
290 Brazil 28184 T C 2165 2164 Ser97Ser
291 Brazil 28185 C 2165 2165
292 Brazil 28186 T 2165 2165
293 Brazil 28187 T 2165 2165
294 Brazil 28188 G 2165 2165
295 Brazil 28189 T 2165 2165
296 Brazil 28190 A 2165 2165
297 Brazil 28191 G 2165 2165
298 Brazil 28192 T 2165 2165
299 Brazil 28193 G 2165 2165
300 Brazil 28194 C 2165 2165
301 Brazil 28195 G 2165 2165
302 Brazil 28196 T 2165 2165
303 Brazil 28197 T 2165 2165
304 Brazil 28198 G 2165 2165
305 Brazil 28199 T 2165 2165
306 Brazil 28200 T 2165 2165
307 Brazil 28201 C 2165 2165
308 Brazil 28202 G 2165 2165
309 Brazil 28203 T 2165 2165
310 Brazil 28204 T 2165 2165
311 Brazil 28205 C 2165 2165
312 Brazil 28206 T 2165 2165
313 Brazil 28207 A 2165 2165
314 Brazil 28208 T 2165 2165
315 Brazil 28209 G T 2165 2163 Glu106*
316 Brazil 28210 A 2165 2165
317 Brazil 28211 A 2165 2165
318 Brazil 28212 G A 2165 2164 Asp107Asn
319 Brazil 28213 A 2165 2165
320 Brazil 28214 C 2165 2165
321 Brazil 28215 T 2166 2166
322 Brazil 28216 T 2166 2166
323 Brazil 28217 T 2166 2166
324 Brazil 28218 T 2166 2166
325 Brazil 28219 T 2166 2166
326 Brazil 28220 A 2166 2166
327 Brazil 28221 G 2166 2166
328 Brazil 28222 A 2166 2166
329 Brazil 28223 G 2166 2166
330 Brazil 28224 T 2166 2166
331 Brazil 28225 A 2166 2165
332 Brazil 28226 T 2166 2165
333 Brazil 28227 C 2166 2165
334 Brazil 28228 A 2166 2166
335 Brazil 28229 T 2166 2166
336 Brazil 28230 G 2166 2166
337 Brazil 28231 A 2166 2166
338 Brazil 28232 C 2166 2166
339 Brazil 28233 G 2166 2166
340 Brazil 28234 T 2166 2166
341 Brazil 28235 T 2166 2166
342 Brazil 28236 C 2166 2166
343 Brazil 28237 G A 2166 2165 Arg115His
344 Brazil 28238 T 2166 2166
345 Brazil 28239 G 2166 2166
346 Brazil 28240 T 2166 2166
347 Brazil 28241 T 2166 2166
348 Brazil 28242 G 2166 2166
349 Brazil 28243 T 2166 2166
350 Brazil 28244 T 2166 2166
351 Brazil 28245 T C 2166 2163 Leu118Leu
352 Brazil 28246 T 2166 2166
353 Brazil 28247 A G 2166 2165 Leu118Leu
354 Brazil 28248 G 2166 2166
355 Brazil 28249 A 2166 2166
356 Brazil 28250 T 2166 2166
357 Brazil 28251 T 2166 2166
358 Brazil 28252 T 2166 2166
359 Brazil 28253 C T 2166 2043 Phe120Phe
360 Brazil 28254 A C 2166 2157 Ile121Leu
361 Brazil 28255 T C 2166 2165 Ile121Thr
362 Brazil 28256 C 2166 2166
363 Brazil 28257 T 2166 2166
364 Brazil 28258 A 2166 2166
365 Brazil 28259 A 2166 2166