National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24         1                              
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 27894 A 13 13
1 Botswana 27895 T 13 13
2 Botswana 27896 G 13 13
3 Botswana 27897 A 13 13
4 Botswana 27898 A 13 13
5 Botswana 27899 A 13 13
6 Botswana 27900 T 13 13
7 Botswana 27901 T 13 13
8 Botswana 27902 T 13 13
9 Botswana 27903 C 13 13
10 Botswana 27904 T 13 13
11 Botswana 27905 T 13 13
12 Botswana 27906 G 13 13
13 Botswana 27907 T 13 13
14 Botswana 27908 T 13 13
15 Botswana 27909 T 13 13
16 Botswana 27910 T 13 13
17 Botswana 27911 C 13 13
18 Botswana 27912 T 13 13
19 Botswana 27913 T 13 13
20 Botswana 27914 A 13 13
21 Botswana 27915 G 13 13
22 Botswana 27916 G 13 13
23 Botswana 27917 A 13 13
24 Botswana 27918 A 13 13
25 Botswana 27919 T 13 13
26 Botswana 27920 C 13 13
27 Botswana 27921 A 13 13
28 Botswana 27922 T 13 13
29 Botswana 27923 C 13 13
30 Botswana 27924 A 13 13
31 Botswana 27925 C 13 13
32 Botswana 27926 A 13 13
33 Botswana 27927 A 13 13
34 Botswana 27928 C 13 13
35 Botswana 27929 T 13 13
36 Botswana 27930 G 13 13
37 Botswana 27931 T 13 13
38 Botswana 27932 A 13 13
39 Botswana 27933 G 13 13
40 Botswana 27934 C 13 13
41 Botswana 27935 T 13 13
42 Botswana 27936 G 13 13
43 Botswana 27937 C 13 13
44 Botswana 27938 A 13 13
45 Botswana 27939 T 13 13
46 Botswana 27940 T 13 13
47 Botswana 27941 T 13 13
48 Botswana 27942 C 13 13
49 Botswana 27943 A 13 13
50 Botswana 27944 C 13 13
51 Botswana 27945 C 13 13
52 Botswana 27946 A 13 13
53 Botswana 27947 A 13 13
54 Botswana 27948 G 13 13
55 Botswana 27949 A 13 13
56 Botswana 27950 A 13 13
57 Botswana 27951 T 13 13
58 Botswana 27952 G 13 13
59 Botswana 27953 T 13 13
60 Botswana 27954 A 13 13
61 Botswana 27955 G 13 13
62 Botswana 27956 T 13 13
63 Botswana 27957 T 13 13
64 Botswana 27958 T 13 13
65 Botswana 27959 A 13 13
66 Botswana 27960 C 13 13
67 Botswana 27961 A 13 13
68 Botswana 27962 G 13 13
69 Botswana 27963 T 13 13
70 Botswana 27964 C 13 13
71 Botswana 27965 A 13 13
72 Botswana 27966 T 13 13
73 Botswana 27967 G 13 13
74 Botswana 27968 T 13 13
75 Botswana 27969 A 13 13
76 Botswana 27970 C 13 13
77 Botswana 27971 T 13 13
78 Botswana 27972 C 13 13
79 Botswana 27973 A 13 13
80 Botswana 27974 A 13 13
81 Botswana 27975 C 13 13
82 Botswana 27976 A 13 13
83 Botswana 27977 T 13 13
84 Botswana 27978 C 13 13
85 Botswana 27979 A 13 13
86 Botswana 27980 A 13 13
87 Botswana 27981 C 13 13
88 Botswana 27982 C 13 13
89 Botswana 27983 A 13 13
90 Botswana 27984 T 13 13
91 Botswana 27985 A 13 13
92 Botswana 27986 T 13 13
93 Botswana 27987 G 13 13
94 Botswana 27988 T 13 13
95 Botswana 27989 A 13 13
96 Botswana 27990 G 13 13
97 Botswana 27991 T 13 13
98 Botswana 27992 T 13 13
99 Botswana 27993 G 13 13
100 Botswana 27994 A 13 13
101 Botswana 27995 T 13 13
102 Botswana 27996 G 13 13
103 Botswana 27997 A 13 13
104 Botswana 27998 C 13 13
105 Botswana 27999 C 13 13
106 Botswana 28000 C 13 13
107 Botswana 28001 G 13 13
108 Botswana 28002 T 13 13
109 Botswana 28003 G 13 13
110 Botswana 28004 T 13 13
111 Botswana 28005 C 13 13
112 Botswana 28006 C 13 13
113 Botswana 28007 T 13 13
114 Botswana 28008 A 13 13
115 Botswana 28009 T 13 13
116 Botswana 28010 T 13 13
117 Botswana 28011 C 13 13
118 Botswana 28012 A 13 13
119 Botswana 28013 C 13 13
120 Botswana 28014 T 13 13
121 Botswana 28015 T 13 13
122 Botswana 28016 C 13 13
123 Botswana 28017 T 13 13
124 Botswana 28018 A 13 13
125 Botswana 28019 T 13 13
126 Botswana 28020 T 13 13
127 Botswana 28021 C 13 13
128 Botswana 28022 T 13 13
129 Botswana 28023 A 13 13
130 Botswana 28024 A 13 13
131 Botswana 28025 A 13 13
132 Botswana 28026 T 13 13
133 Botswana 28027 G 13 13
134 Botswana 28028 G 13 13
135 Botswana 28029 T 13 13
136 Botswana 28030 A 13 13
137 Botswana 28031 T 13 13
138 Botswana 28032 A 13 13
139 Botswana 28033 T 13 13
140 Botswana 28034 T 13 13
141 Botswana 28035 A 13 13
142 Botswana 28036 G 13 13
143 Botswana 28037 A 13 13
144 Botswana 28038 G 13 13
145 Botswana 28039 T 13 13
146 Botswana 28040 A 13 13
147 Botswana 28041 G 13 13
148 Botswana 28042 G 13 13
149 Botswana 28043 A 13 13
150 Botswana 28044 G 13 13
151 Botswana 28045 C 13 13
152 Botswana 28046 T 13 13
153 Botswana 28047 A 13 13
154 Botswana 28048 G 13 13
155 Botswana 28049 A 13 13
156 Botswana 28050 A 13 13
157 Botswana 28051 A 13 13
158 Botswana 28052 A 13 13
159 Botswana 28053 T 13 13
160 Botswana 28054 C 13 13
161 Botswana 28055 A 13 13
162 Botswana 28056 G 13 13
163 Botswana 28057 C 13 13
164 Botswana 28058 A 13 13
165 Botswana 28059 C 13 13
166 Botswana 28060 C 13 13
167 Botswana 28061 T 13 13
168 Botswana 28062 T 13 13
169 Botswana 28063 T 13 13
170 Botswana 28064 A 13 13
171 Botswana 28065 A 13 13
172 Botswana 28066 T 13 13
173 Botswana 28067 T 13 13
174 Botswana 28068 G 13 13
175 Botswana 28069 A 13 13
176 Botswana 28070 A 13 13
177 Botswana 28071 T 13 13
178 Botswana 28072 T 13 13
179 Botswana 28073 G 13 13
180 Botswana 28074 T 13 13
181 Botswana 28075 G 13 13
182 Botswana 28076 C 13 13
183 Botswana 28077 G 13 13
184 Botswana 28078 T 13 13
185 Botswana 28079 G 13 13
186 Botswana 28080 G 13 13
187 Botswana 28081 A 13 13
188 Botswana 28082 T 13 13
189 Botswana 28083 G 13 13
190 Botswana 28084 A 13 13
191 Botswana 28085 G 13 13
192 Botswana 28086 G 13 13
193 Botswana 28087 C 13 13
194 Botswana 28088 T 13 13
195 Botswana 28089 G 13 13
196 Botswana 28090 G 13 13
197 Botswana 28091 T 13 13
198 Botswana 28092 T 13 13
199 Botswana 28093 C 13 13
200 Botswana 28094 T 13 13
201 Botswana 28095 A 13 13
202 Botswana 28096 A 13 13
203 Botswana 28097 A 13 13
204 Botswana 28098 T 13 13
205 Botswana 28099 C 13 13
206 Botswana 28100 A 13 13
207 Botswana 28101 C 13 13
208 Botswana 28102 C 13 13
209 Botswana 28103 C 13 13
210 Botswana 28104 A 13 13
211 Botswana 28105 T 13 13
212 Botswana 28106 T 13 13
213 Botswana 28107 C 13 13
214 Botswana 28108 A 13 13
215 Botswana 28109 G 13 13
216 Botswana 28110 T 13 13
217 Botswana 28111 A 13 13
218 Botswana 28112 C 13 13
219 Botswana 28113 A 13 13
220 Botswana 28114 T 13 13
221 Botswana 28115 C 13 13
222 Botswana 28116 G 13 13
223 Botswana 28117 A 13 13
224 Botswana 28118 T 13 13
225 Botswana 28119 A 13 13
226 Botswana 28120 T 13 13
227 Botswana 28121 C 13 13
228 Botswana 28122 G 13 13
229 Botswana 28123 G 13 13
230 Botswana 28124 T 13 13
231 Botswana 28125 A 13 13
232 Botswana 28126 A 13 13
233 Botswana 28127 T 13 13
234 Botswana 28128 T 13 13
235 Botswana 28129 A 13 13
236 Botswana 28130 T 13 13
237 Botswana 28131 A 13 13
238 Botswana 28132 C 13 13
239 Botswana 28133 A 13 13
240 Botswana 28134 G 13 13
241 Botswana 28135 T 13 13
242 Botswana 28136 T 13 13
243 Botswana 28137 T 13 13
244 Botswana 28138 C 13 13
245 Botswana 28139 C 13 13
246 Botswana 28140 T 13 13
247 Botswana 28141 G 13 13
248 Botswana 28142 T 13 13
249 Botswana 28143 T 13 13
250 Botswana 28144 T 13 13
251 Botswana 28145 A 13 13
252 Botswana 28146 C 13 13
253 Botswana 28147 C 13 13
254 Botswana 28148 T 13 13
255 Botswana 28149 T 13 13
256 Botswana 28150 T 13 13
257 Botswana 28151 T 13 13
258 Botswana 28152 A 13 13
259 Botswana 28153 C 13 13
260 Botswana 28154 A 13 13
261 Botswana 28155 A 13 13
262 Botswana 28156 T 13 13
263 Botswana 28157 T 13 13
264 Botswana 28158 A 13 13
265 Botswana 28159 A 13 13
266 Botswana 28160 T 13 13
267 Botswana 28161 T 13 13
268 Botswana 28162 G 13 13
269 Botswana 28163 C 13 13
270 Botswana 28164 C 13 13
271 Botswana 28165 A 13 13
272 Botswana 28166 G 13 13
273 Botswana 28167 G 13 13
274 Botswana 28168 A 13 13
275 Botswana 28169 A 13 13
276 Botswana 28170 C 13 13
277 Botswana 28171 C 13 13
278 Botswana 28172 T 13 13
279 Botswana 28173 A 13 13
280 Botswana 28174 A 13 13
281 Botswana 28175 A 13 13
282 Botswana 28176 T 13 13
283 Botswana 28177 T 13 13
284 Botswana 28178 G 13 13
285 Botswana 28179 G 13 13
286 Botswana 28180 G 13 13
287 Botswana 28181 T 13 13
288 Botswana 28182 A 13 13
289 Botswana 28183 G 13 13
290 Botswana 28184 T 13 13
291 Botswana 28185 C 13 13
292 Botswana 28186 T 13 13
293 Botswana 28187 T 13 13
294 Botswana 28188 G 13 13
295 Botswana 28189 T 13 13
296 Botswana 28190 A 13 13
297 Botswana 28191 G 13 13
298 Botswana 28192 T 13 13
299 Botswana 28193 G 13 13
300 Botswana 28194 C 13 13
301 Botswana 28195 G 13 13
302 Botswana 28196 T 13 13
303 Botswana 28197 T 13 13
304 Botswana 28198 G 13 13
305 Botswana 28199 T 13 13
306 Botswana 28200 T 13 13
307 Botswana 28201 C 13 13
308 Botswana 28202 G 13 13
309 Botswana 28203 T 13 13
310 Botswana 28204 T 13 13
311 Botswana 28205 C 13 13
312 Botswana 28206 T 13 13
313 Botswana 28207 A 13 13
314 Botswana 28208 T 13 13
315 Botswana 28209 G 13 13
316 Botswana 28210 A 13 13
317 Botswana 28211 A 13 13
318 Botswana 28212 G 13 13
319 Botswana 28213 A 13 13
320 Botswana 28214 C 13 13
321 Botswana 28215 T 13 13
322 Botswana 28216 T 13 13
323 Botswana 28217 T 13 13
324 Botswana 28218 T 13 13
325 Botswana 28219 T 13 13
326 Botswana 28220 A 13 13
327 Botswana 28221 G 13 13
328 Botswana 28222 A 13 13
329 Botswana 28223 G 13 13
330 Botswana 28224 T 13 13
331 Botswana 28225 A 13 13
332 Botswana 28226 T 13 13
333 Botswana 28227 C 13 13
334 Botswana 28228 A 13 13
335 Botswana 28229 T 13 13
336 Botswana 28230 G 13 13
337 Botswana 28231 A 13 13
338 Botswana 28232 C 13 13
339 Botswana 28233 G 13 13
340 Botswana 28234 T 13 13
341 Botswana 28235 T 13 13
342 Botswana 28236 C 13 13
343 Botswana 28237 G 13 13
344 Botswana 28238 T 13 13
345 Botswana 28239 G 13 13
346 Botswana 28240 T 13 13
347 Botswana 28241 T 13 13
348 Botswana 28242 G 13 13
349 Botswana 28243 T 13 13
350 Botswana 28244 T 13 13
351 Botswana 28245 T 13 13
352 Botswana 28246 T 13 13
353 Botswana 28247 A 13 13
354 Botswana 28248 G 13 13
355 Botswana 28249 A 13 13
356 Botswana 28250 T 13 13
357 Botswana 28251 T 13 13
358 Botswana 28252 T 13 13
359 Botswana 28253 C T 13 6 Phe120Phe
360 Botswana 28254 A 13 13
361 Botswana 28255 T 13 13
362 Botswana 28256 C 13 13
363 Botswana 28257 T 13 13
364 Botswana 28258 A 13 13
365 Botswana 28259 A 13 13