National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                   1                    
Q     18                                        
R     12             1                          
S     27                                        
T     15                                        
V     36                   1                    
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 27894 A 27 27
1 Bolivia 27895 T 27 27
2 Bolivia 27896 G 27 27
3 Bolivia 27897 A 27 27
4 Bolivia 27898 A 27 27
5 Bolivia 27899 A 27 27
6 Bolivia 27900 T 27 27
7 Bolivia 27901 T 27 27
8 Bolivia 27902 T 27 27
9 Bolivia 27903 C 27 27
10 Bolivia 27904 T 27 27
11 Bolivia 27905 T 27 27
12 Bolivia 27906 G 27 27
13 Bolivia 27907 T 27 27
14 Bolivia 27908 T 27 27
15 Bolivia 27909 T 27 27
16 Bolivia 27910 T 27 27
17 Bolivia 27911 C 27 27
18 Bolivia 27912 T 27 27
19 Bolivia 27913 T 27 27
20 Bolivia 27914 A 27 27
21 Bolivia 27915 G 27 27
22 Bolivia 27916 G 27 27
23 Bolivia 27917 A 27 27
24 Bolivia 27918 A 27 27
25 Bolivia 27919 T 27 27
26 Bolivia 27920 C 27 27
27 Bolivia 27921 A 27 27
28 Bolivia 27922 T 27 27
29 Bolivia 27923 C 27 27
30 Bolivia 27924 A 27 27
31 Bolivia 27925 C 27 27
32 Bolivia 27926 A 27 27
33 Bolivia 27927 A 27 27
34 Bolivia 27928 C 27 27
35 Bolivia 27929 T 27 27
36 Bolivia 27930 G 27 27
37 Bolivia 27931 T 27 27
38 Bolivia 27932 A 27 27
39 Bolivia 27933 G 27 27
40 Bolivia 27934 C 27 27
41 Bolivia 27935 T 27 27
42 Bolivia 27936 G 27 27
43 Bolivia 27937 C 27 27
44 Bolivia 27938 A 27 27
45 Bolivia 27939 T 27 27
46 Bolivia 27940 T 27 27
47 Bolivia 27941 T 27 27
48 Bolivia 27942 C 27 27
49 Bolivia 27943 A 27 27
50 Bolivia 27944 C 27 27
51 Bolivia 27945 C 27 27
52 Bolivia 27946 A 27 27
53 Bolivia 27947 A 27 27
54 Bolivia 27948 G 27 27
55 Bolivia 27949 A 27 27
56 Bolivia 27950 A 27 27
57 Bolivia 27951 T 27 27
58 Bolivia 27952 G 27 27
59 Bolivia 27953 T 27 27
60 Bolivia 27954 A 27 27
61 Bolivia 27955 G 27 27
62 Bolivia 27956 T 27 27
63 Bolivia 27957 T 27 27
64 Bolivia 27958 T 27 27
65 Bolivia 27959 A 27 27
66 Bolivia 27960 C 27 27
67 Bolivia 27961 A 27 27
68 Bolivia 27962 G 27 27
69 Bolivia 27963 T 27 27
70 Bolivia 27964 C 27 27
71 Bolivia 27965 A 27 27
72 Bolivia 27966 T 27 27
73 Bolivia 27967 G 27 27
74 Bolivia 27968 T 27 27
75 Bolivia 27969 A 27 27
76 Bolivia 27970 C 27 27
77 Bolivia 27971 T 27 27
78 Bolivia 27972 C 27 27
79 Bolivia 27973 A 27 27
80 Bolivia 27974 A 27 27
81 Bolivia 27975 C 27 27
82 Bolivia 27976 A 27 27
83 Bolivia 27977 T 27 27
84 Bolivia 27978 C 27 27
85 Bolivia 27979 A 27 27
86 Bolivia 27980 A 27 27
87 Bolivia 27981 C 27 27
88 Bolivia 27982 C T 27 15 Pro30Leu
89 Bolivia 27983 A 27 27
90 Bolivia 27984 T 27 27
91 Bolivia 27985 A 27 27
92 Bolivia 27986 T 27 27
93 Bolivia 27987 G 27 27
94 Bolivia 27988 T 27 27
95 Bolivia 27989 A 27 27
96 Bolivia 27990 G 27 27
97 Bolivia 27991 T 27 27
98 Bolivia 27992 T 27 27
99 Bolivia 27993 G 27 27
100 Bolivia 27994 A 27 27
101 Bolivia 27995 T 27 27
102 Bolivia 27996 G 27 27
103 Bolivia 27997 A 27 27
104 Bolivia 27998 C 27 27
105 Bolivia 27999 C 27 27
106 Bolivia 28000 C 27 27
107 Bolivia 28001 G 27 27
108 Bolivia 28002 T 27 27
109 Bolivia 28003 G 27 27
110 Bolivia 28004 T 27 27
111 Bolivia 28005 C 27 27
112 Bolivia 28006 C 27 27
113 Bolivia 28007 T 27 27
114 Bolivia 28008 A 27 27
115 Bolivia 28009 T 27 27
116 Bolivia 28010 T 27 27
117 Bolivia 28011 C 27 27
118 Bolivia 28012 A 27 27
119 Bolivia 28013 C 27 27
120 Bolivia 28014 T 27 27
121 Bolivia 28015 T 27 27
122 Bolivia 28016 C 27 27
123 Bolivia 28017 T 27 27
124 Bolivia 28018 A 27 27
125 Bolivia 28019 T 27 27
126 Bolivia 28020 T 27 27
127 Bolivia 28021 C 27 27
128 Bolivia 28022 T 27 27
129 Bolivia 28023 A 27 27
130 Bolivia 28024 A 27 27
131 Bolivia 28025 A 27 27
132 Bolivia 28026 T 27 27
133 Bolivia 28027 G 27 27
134 Bolivia 28028 G 27 27
135 Bolivia 28029 T 27 27
136 Bolivia 28030 A 27 27
137 Bolivia 28031 T 27 27
138 Bolivia 28032 A 27 27
139 Bolivia 28033 T 27 27
140 Bolivia 28034 T 27 27
141 Bolivia 28035 A 27 27
142 Bolivia 28036 G 27 27
143 Bolivia 28037 A 27 27
144 Bolivia 28038 G 27 27
145 Bolivia 28039 T 27 27
146 Bolivia 28040 A 27 27
147 Bolivia 28041 G 27 27
148 Bolivia 28042 G 27 27
149 Bolivia 28043 A 27 27
150 Bolivia 28044 G 27 27
151 Bolivia 28045 C 27 27
152 Bolivia 28046 T 27 27
153 Bolivia 28047 A 27 27
154 Bolivia 28048 G 27 27
155 Bolivia 28049 A 27 27
156 Bolivia 28050 A 27 27
157 Bolivia 28051 A 27 27
158 Bolivia 28052 A 27 27
159 Bolivia 28053 T 27 27
160 Bolivia 28054 C 27 27
161 Bolivia 28055 A 27 27
162 Bolivia 28056 G 27 27
163 Bolivia 28057 C 27 27
164 Bolivia 28058 A 27 27
165 Bolivia 28059 C 27 27
166 Bolivia 28060 C 27 27
167 Bolivia 28061 T 27 27
168 Bolivia 28062 T 27 27
169 Bolivia 28063 T 27 27
170 Bolivia 28064 A 27 27
171 Bolivia 28065 A 27 27
172 Bolivia 28066 T 27 27
173 Bolivia 28067 T 27 27
174 Bolivia 28068 G 27 27
175 Bolivia 28069 A 27 27
176 Bolivia 28070 A 27 27
177 Bolivia 28071 T 27 27
178 Bolivia 28072 T 27 27
179 Bolivia 28073 G 27 27
180 Bolivia 28074 T 27 27
181 Bolivia 28075 G 27 27
182 Bolivia 28076 C 27 27
183 Bolivia 28077 G T 27 25 Val62Leu
184 Bolivia 28078 T 27 27
185 Bolivia 28079 G 27 27
186 Bolivia 28080 G 27 27
187 Bolivia 28081 A 27 27
188 Bolivia 28082 T 27 27
189 Bolivia 28083 G 27 27
190 Bolivia 28084 A 27 27
191 Bolivia 28085 G 27 27
192 Bolivia 28086 G 27 27
193 Bolivia 28087 C 27 27
194 Bolivia 28088 T 27 27
195 Bolivia 28089 G 27 27
196 Bolivia 28090 G 27 27
197 Bolivia 28091 T 27 27
198 Bolivia 28092 T 27 27
199 Bolivia 28093 C 27 27
200 Bolivia 28094 T 27 27
201 Bolivia 28095 A 27 27
202 Bolivia 28096 A 27 27
203 Bolivia 28097 A 27 27
204 Bolivia 28098 T 27 27
205 Bolivia 28099 C 27 27
206 Bolivia 28100 A 27 27
207 Bolivia 28101 C 27 27
208 Bolivia 28102 C 27 27
209 Bolivia 28103 C 27 27
210 Bolivia 28104 A 27 27
211 Bolivia 28105 T 27 27
212 Bolivia 28106 T 27 27
213 Bolivia 28107 C 27 27
214 Bolivia 28108 A 27 27
215 Bolivia 28109 G 27 27
216 Bolivia 28110 T 27 27
217 Bolivia 28111 A 27 27
218 Bolivia 28112 C 27 27
219 Bolivia 28113 A 27 27
220 Bolivia 28114 T 27 27
221 Bolivia 28115 C 27 27
222 Bolivia 28116 G 27 27
223 Bolivia 28117 A 27 27
224 Bolivia 28118 T 27 27
225 Bolivia 28119 A 27 27
226 Bolivia 28120 T 27 27
227 Bolivia 28121 C 27 27
228 Bolivia 28122 G 27 27
229 Bolivia 28123 G 27 27
230 Bolivia 28124 T 27 27
231 Bolivia 28125 A 27 27
232 Bolivia 28126 A 27 27
233 Bolivia 28127 T 27 27
234 Bolivia 28128 T 27 27
235 Bolivia 28129 A 27 27
236 Bolivia 28130 T 27 27
237 Bolivia 28131 A 27 27
238 Bolivia 28132 C 27 27
239 Bolivia 28133 A 27 27
240 Bolivia 28134 G 27 27
241 Bolivia 28135 T 27 27
242 Bolivia 28136 T 27 27
243 Bolivia 28137 T 27 27
244 Bolivia 28138 C 27 27
245 Bolivia 28139 C 27 27
246 Bolivia 28140 T 27 27
247 Bolivia 28141 G 27 27
248 Bolivia 28142 T 27 27
249 Bolivia 28143 T 27 27
250 Bolivia 28144 T C 27 26 Leu84Ser
251 Bolivia 28145 A 27 27
252 Bolivia 28146 C 27 27
253 Bolivia 28147 C 27 27
254 Bolivia 28148 T 27 27
255 Bolivia 28149 T 27 27
256 Bolivia 28150 T 27 27
257 Bolivia 28151 T 27 27
258 Bolivia 28152 A 27 27
259 Bolivia 28153 C 27 27
260 Bolivia 28154 A 27 27
261 Bolivia 28155 A 27 27
262 Bolivia 28156 T 27 27
263 Bolivia 28157 T 27 27
264 Bolivia 28158 A 27 27
265 Bolivia 28159 A 27 27
266 Bolivia 28160 T 27 27
267 Bolivia 28161 T 27 27
268 Bolivia 28162 G 27 27
269 Bolivia 28163 C 27 27
270 Bolivia 28164 C 27 27
271 Bolivia 28165 A 27 27
272 Bolivia 28166 G 27 27
273 Bolivia 28167 G 27 27
274 Bolivia 28168 A 27 27
275 Bolivia 28169 A 27 27
276 Bolivia 28170 C 27 27
277 Bolivia 28171 C 27 27
278 Bolivia 28172 T 27 27
279 Bolivia 28173 A 27 27
280 Bolivia 28174 A 27 27
281 Bolivia 28175 A 27 27
282 Bolivia 28176 T 27 27
283 Bolivia 28177 T 27 27
284 Bolivia 28178 G 27 27
285 Bolivia 28179 G 27 27
286 Bolivia 28180 G 27 27
287 Bolivia 28181 T 27 27
288 Bolivia 28182 A 27 27
289 Bolivia 28183 G 27 27
290 Bolivia 28184 T 27 27
291 Bolivia 28185 C 27 27
292 Bolivia 28186 T 27 27
293 Bolivia 28187 T 27 27
294 Bolivia 28188 G 27 27
295 Bolivia 28189 T 27 27
296 Bolivia 28190 A 27 27
297 Bolivia 28191 G 27 27
298 Bolivia 28192 T 27 27
299 Bolivia 28193 G 27 27
300 Bolivia 28194 C 27 27
301 Bolivia 28195 G A 27 26 Arg101His
302 Bolivia 28196 T 27 27
303 Bolivia 28197 T 27 27
304 Bolivia 28198 G 27 27
305 Bolivia 28199 T 27 27
306 Bolivia 28200 T 27 27
307 Bolivia 28201 C 27 27
308 Bolivia 28202 G 27 27
309 Bolivia 28203 T 27 27
310 Bolivia 28204 T 27 27
311 Bolivia 28205 C 27 27
312 Bolivia 28206 T 27 27
313 Bolivia 28207 A 27 27
314 Bolivia 28208 T 27 27
315 Bolivia 28209 G 27 27
316 Bolivia 28210 A 27 27
317 Bolivia 28211 A 27 27
318 Bolivia 28212 G 27 27
319 Bolivia 28213 A 27 27
320 Bolivia 28214 C 27 27
321 Bolivia 28215 T 27 27
322 Bolivia 28216 T 27 27
323 Bolivia 28217 T 27 27
324 Bolivia 28218 T 27 27
325 Bolivia 28219 T 27 27
326 Bolivia 28220 A 27 27
327 Bolivia 28221 G 27 27
328 Bolivia 28222 A 27 27
329 Bolivia 28223 G 27 27
330 Bolivia 28224 T 27 27
331 Bolivia 28225 A 27 27
332 Bolivia 28226 T 27 27
333 Bolivia 28227 C 27 27
334 Bolivia 28228 A 27 27
335 Bolivia 28229 T 27 27
336 Bolivia 28230 G 27 27
337 Bolivia 28231 A 27 27
338 Bolivia 28232 C 27 27
339 Bolivia 28233 G 27 27
340 Bolivia 28234 T 27 27
341 Bolivia 28235 T 27 27
342 Bolivia 28236 C 27 27
343 Bolivia 28237 G 27 27
344 Bolivia 28238 T 27 27
345 Bolivia 28239 G 27 27
346 Bolivia 28240 T 27 27
347 Bolivia 28241 T 27 27
348 Bolivia 28242 G 27 27
349 Bolivia 28243 T 27 27
350 Bolivia 28244 T 27 27
351 Bolivia 28245 T 27 27
352 Bolivia 28246 T 27 27
353 Bolivia 28247 A 27 27
354 Bolivia 28248 G 27 27
355 Bolivia 28249 A 27 27
356 Bolivia 28250 T 27 27
357 Bolivia 28251 T 27 27
358 Bolivia 28252 T 27 27
359 Bolivia 28253 C 27 27
360 Bolivia 28254 A 27 27
361 Bolivia 28255 T 27 27
362 Bolivia 28256 C 27 27
363 Bolivia 28257 T 27 27
364 Bolivia 28258 A 27 27
365 Bolivia 28259 A 27 27