National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15           1                   1   3    
C     21         1                              
D     22 1   2 1   2                           1
E 3   18       1   1                            
F     24         2                         1    
G     15                                   1    
H     12             1             1           2
I     30               1                 4 1    
K 1   15                 1                      
L     30         2                     2   1    
M     3                                        
N     6                                        
P     21                         1     3 1      
Q 2   18             1     1         1          
R     12   1           1                        
S     27         1     1   1     1     1        
T     15               3       1         2      
V     36 1       2     1   2               2    
W     3   1                                    
Y     21   2     1                             1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Belgium 27894 A 3146 3146
1 Belgium 27895 T 3146 3146
2 Belgium 27896 G 3146 3146
3 Belgium 27897 A 3146 3146
4 Belgium 27898 A 3146 3146
5 Belgium 27899 A 3146 3146
6 Belgium 27900 T 3146 3146
7 Belgium 27901 T 3146 3146
8 Belgium 27902 T 3146 3146
9 Belgium 27903 C T 3146 3145 Leu4Phe
10 Belgium 27904 T 3147 3147
11 Belgium 27905 T 3147 3147
12 Belgium 27906 G T 3147 3146 Val5Phe
13 Belgium 27907 T 3147 3147
14 Belgium 27908 T 3147 3147
15 Belgium 27909 T 3147 3147
16 Belgium 27910 T 3147 3147
17 Belgium 27911 C 3147 3147
18 Belgium 27912 T 3147 3147
19 Belgium 27913 T C 3147 3141 Leu7Ser
20 Belgium 27914 A 3147 3147
21 Belgium 27915 G 3147 3147
22 Belgium 27916 G 3147 3147
23 Belgium 27917 A 3147 3147
24 Belgium 27918 A 3147 3147
25 Belgium 27919 T 3147 3147
26 Belgium 27920 C 3147 3147
27 Belgium 27921 A 3147 3147
28 Belgium 27922 T C 3147 3068 Ile10Thr
29 Belgium 27923 C T 3147 3145 Ile10Ile
30 Belgium 27924 A 3147 3147
31 Belgium 27925 C T 3147 3121 Thr11Ile
32 Belgium 27926 A 3147 3147
33 Belgium 27927 A 3147 3147
34 Belgium 27928 C 3147 3147
35 Belgium 27929 T 3147 3147
36 Belgium 27930 G A 3147 3146 Val13Ile
37 Belgium 27931 T C 3147 3142 Val13Ala
38 Belgium 27932 A 3147 3147
39 Belgium 27933 G 3147 3147
40 Belgium 27934 C 3147 3147
41 Belgium 27935 T 3147 3147
42 Belgium 27936 G 3147 3147
43 Belgium 27937 C T 3147 3146 Ala15Val
44 Belgium 27938 A 3147 3147
45 Belgium 27939 T 3147 3147
46 Belgium 27940 T 3147 3147
47 Belgium 27941 T C 3147 3145 Phe16Phe
48 Belgium 27942 C T 3147 3145 His17Tyr
49 Belgium 27943 A 3147 3147
50 Belgium 27944 C T 3147 2997 His17His
51 Belgium 27945 C T 3147 3140 Gln18*
52 Belgium 27946 A 3147 3147
53 Belgium 27947 A 3147 3147
54 Belgium 27948 G 3147 3147
55 Belgium 27949 A 3147 3147
56 Belgium 27950 A 3147 3147
57 Belgium 27951 T 3147 3147
58 Belgium 27952 G 3147 3147
59 Belgium 27953 T 3147 3147
60 Belgium 27954 A 3147 3147
61 Belgium 27955 G 3147 3147
62 Belgium 27956 T 3147 3147
63 Belgium 27957 T 3147 3147
64 Belgium 27958 T 3147 3147
65 Belgium 27959 A 3147 3147
66 Belgium 27960 C 3147 3147
67 Belgium 27961 A 3147 3147
68 Belgium 27962 G 3147 3147
69 Belgium 27963 T 3147 3147
70 Belgium 27964 C 3147 3147
71 Belgium 27965 A 3147 3147
72 Belgium 27966 T 3147 3147
73 Belgium 27967 G 3147 3147
74 Belgium 27968 T 3147 3147
75 Belgium 27969 A 3147 3147
76 Belgium 27970 C T,A 3147 3145 Thr26Ile-p.Thr26Asn
77 Belgium 27971 T 3147 3147
78 Belgium 27972 C T 3147 3064 Gln27*
79 Belgium 27973 A 3147 3147
80 Belgium 27974 A 3147 3146
81 Belgium 27975 C 3147 3146
82 Belgium 27976 A 3147 3146
83 Belgium 27977 T G 3147 3145 His28Gln
84 Belgium 27978 C 3147 3146
85 Belgium 27979 A T 3147 3145 Gln29Leu
86 Belgium 27980 A 3147 3146
87 Belgium 27981 C A,T 3147 3141 Pro30Thr-p.Pro30Ser
88 Belgium 27982 C 3147 3146
89 Belgium 27983 A G 3147 3145 Pro30Pro
90 Belgium 27984 T 3147 3146
91 Belgium 27985 A 3147 3146
92 Belgium 27986 T 3147 3146
93 Belgium 27987 G 3147 3146
94 Belgium 27988 T 3147 3146
95 Belgium 27989 A 3147 3146
96 Belgium 27990 G 3147 3146
97 Belgium 27991 T 3147 3146
98 Belgium 27992 T A 3147 3144 Val33Val
99 Belgium 27993 G 3147 3146
100 Belgium 27994 A 3147 3146
101 Belgium 27995 T 3147 3146
102 Belgium 27996 G 3147 3146
103 Belgium 27997 A C 3147 3143 Asp35Ala
104 Belgium 27998 C T 3147 3142 Asp35Asp
105 Belgium 27999 C T 3147 3142 Pro36Ser
106 Belgium 28000 C 3147 3146
107 Belgium 28001 G 3147 3146
108 Belgium 28002 T 3147 3146
109 Belgium 28003 G 3147 3146
110 Belgium 28004 T 3147 3146
111 Belgium 28005 C T 3147 3140 Pro38Ser
112 Belgium 28006 C 3147 3146
113 Belgium 28007 T 3147 3146
114 Belgium 28008 A 3147 3146
115 Belgium 28009 T C 3147 3135 Ile39Thr
116 Belgium 28010 T 3147 3147
117 Belgium 28011 C T 3147 3145 His40Tyr
118 Belgium 28012 A 3147 3147
119 Belgium 28013 C 3147 3147
120 Belgium 28014 T 3147 3147
121 Belgium 28015 T 3147 3147
122 Belgium 28016 C 3147 3147
123 Belgium 28017 T 3147 3147
124 Belgium 28018 A 3147 3147
125 Belgium 28019 T 3147 3147
126 Belgium 28020 T 3147 3147
127 Belgium 28021 C 3147 3147
128 Belgium 28022 T 3147 3147
129 Belgium 28023 A 3147 3147
130 Belgium 28024 A 3147 3147
131 Belgium 28025 A G 3147 3146 Lys44Lys
132 Belgium 28026 T 3147 3147
133 Belgium 28027 G 3147 3146
134 Belgium 28028 G T 3147 3145 Trp45Cys
135 Belgium 28029 T 3147 3146
136 Belgium 28030 A 3147 3146
137 Belgium 28031 T C 3147 3146 Tyr46Tyr
138 Belgium 28032 A 3147 3147
139 Belgium 28033 T 3147 3147
140 Belgium 28034 T 3147 3147
141 Belgium 28035 A 3147 3147
142 Belgium 28036 G 3147 3147
143 Belgium 28037 A 3147 3147
144 Belgium 28038 G 3147 3147
145 Belgium 28039 T 3147 3147
146 Belgium 28040 A 3147 3147
147 Belgium 28041 G 3147 3147
148 Belgium 28042 G 3147 3147
149 Belgium 28043 A 3147 3147
150 Belgium 28044 G 3147 3147
151 Belgium 28045 C G 3147 3146 Ala51Gly
152 Belgium 28046 T 3147 3147
153 Belgium 28047 A 3147 3147
154 Belgium 28048 G T 3147 3062 Arg52Ile
155 Belgium 28049 A 3147 3147
156 Belgium 28050 A 3147 3147
157 Belgium 28051 A 3147 3147
158 Belgium 28052 A 3147 3147
159 Belgium 28053 T 3147 3147
160 Belgium 28054 C T 3147 3146 Ser54Leu
161 Belgium 28055 A 3148 3148
162 Belgium 28056 G 3148 3148
163 Belgium 28057 C T 3148 3146 Ala55Val
164 Belgium 28058 A 3148 3148
165 Belgium 28059 C 3148 3148
166 Belgium 28060 C 3148 3148
167 Belgium 28061 T 3148 3148
168 Belgium 28062 T 3148 3148
169 Belgium 28063 T 3148 3148
170 Belgium 28064 A 3148 3148
171 Belgium 28065 A 3148 3148
172 Belgium 28066 T C 3148 3147 Ile58Thr
173 Belgium 28067 T 3148 3148
174 Belgium 28068 G T 3148 3147 Glu59*
175 Belgium 28069 A 3148 3148
176 Belgium 28070 A 3148 3148
177 Belgium 28071 T 3148 3148
178 Belgium 28072 T 3148 3148
179 Belgium 28073 G 3148 3148
180 Belgium 28074 T 3148 3148
181 Belgium 28075 G 3148 3148
182 Belgium 28076 C 3148 3148
183 Belgium 28077 G T,C 3148 3142 Val62Leu-p.Val62Leu
184 Belgium 28078 T 3148 3148
185 Belgium 28079 G T 3148 3145 Val62Val
186 Belgium 28080 G T 3148 3147 Asp63Tyr
187 Belgium 28081 A G 3148 3145 Asp63Gly
188 Belgium 28082 T 3148 3148
189 Belgium 28083 G T 3148 3147 Glu64*
190 Belgium 28084 A 3148 3148
191 Belgium 28085 G 3148 3148
192 Belgium 28086 G T 3148 3146 Ala65Ser
193 Belgium 28087 C T 3148 3144 Ala65Val
194 Belgium 28088 T 3148 3148
195 Belgium 28089 G 3148 3148
196 Belgium 28090 G T 3148 3147 Gly66Val
197 Belgium 28091 T 3148 3148
198 Belgium 28092 T 3148 3148
199 Belgium 28093 C T 3148 3143 Ser67Phe
200 Belgium 28094 T 3148 3148
201 Belgium 28095 A T 3148 3130 Lys68*
202 Belgium 28096 A 3148 3148
203 Belgium 28097 A 3148 3148
204 Belgium 28098 T C 3148 3130 Ser69Pro
205 Belgium 28099 C 3148 3148
206 Belgium 28100 A 3148 3148
207 Belgium 28101 C 3148 3148
208 Belgium 28102 C 3148 3148
209 Belgium 28103 C 3148 3148
210 Belgium 28104 A 3148 3148
211 Belgium 28105 T C 3152 3151 Ile71Thr
212 Belgium 28106 T 3152 3152
213 Belgium 28107 C 3152 3152
214 Belgium 28108 A G 3152 3151 Gln72Arg
215 Belgium 28109 G 3152 3152
216 Belgium 28110 T 3152 3152
217 Belgium 28111 A G 3152 3068 Tyr73Cys
218 Belgium 28112 C 3152 3152
219 Belgium 28113 A 3152 3152
220 Belgium 28114 T 3152 3152
221 Belgium 28115 C 3152 3152
222 Belgium 28116 G 3152 3152
223 Belgium 28117 A 3152 3152
224 Belgium 28118 T C 3152 3151 Asp75Asp
225 Belgium 28119 A G 3152 3149 Ile76Val
226 Belgium 28120 T 3152 3152
227 Belgium 28121 C 3152 3152
228 Belgium 28122 G 3152 3152
229 Belgium 28123 G 3152 3152
230 Belgium 28124 T 3152 3152
231 Belgium 28125 A 3152 3152
232 Belgium 28126 A 3152 3152
233 Belgium 28127 T 3152 3152
234 Belgium 28128 T 3152 3152
235 Belgium 28129 A 3152 3152
236 Belgium 28130 T 3152 3152
237 Belgium 28131 A 3152 3152
238 Belgium 28132 C 3152 3152
239 Belgium 28133 A T 3152 3133 Thr80Thr
240 Belgium 28134 G T 3152 3113 Val81Phe
241 Belgium 28135 T 3152 3152
242 Belgium 28136 T 3152 3152
243 Belgium 28137 T 3152 3152
244 Belgium 28138 C 3152 3152
245 Belgium 28139 C A 3152 3151 Ser82Ser
246 Belgium 28140 T 3152 3152
247 Belgium 28141 G 3152 3152
248 Belgium 28142 T 3152 3152
249 Belgium 28143 T 3152 3152
250 Belgium 28144 T C 3152 3135 Leu84Ser
251 Belgium 28145 A 3152 3152
252 Belgium 28146 C 3151 3151
253 Belgium 28147 C 3151 3151
254 Belgium 28148 T 3151 3151
255 Belgium 28149 T 3151 3151
256 Belgium 28150 T 3151 3151
257 Belgium 28151 T 3151 3151
258 Belgium 28152 A 3151 3151
259 Belgium 28153 C T 3151 3150 Thr87Ile
260 Belgium 28154 A T 3151 3150 Thr87Thr
261 Belgium 28155 A 3151 3151
262 Belgium 28156 T 3151 3151
263 Belgium 28157 T 3151 3151
264 Belgium 28158 A 3151 3151
265 Belgium 28159 A 3151 3151
266 Belgium 28160 T 3151 3151
267 Belgium 28161 T 3151 3151
268 Belgium 28162 G 3151 3151
269 Belgium 28163 C 3151 3151
270 Belgium 28164 C 3151 3151
271 Belgium 28165 A 3151 3151
272 Belgium 28166 G T 3151 3144 Gln91His
273 Belgium 28167 G 3151 3151
274 Belgium 28168 A G 3151 3149 Glu92Gly
275 Belgium 28169 A G 3151 3150 Glu92Glu
276 Belgium 28170 C 3151 3151
277 Belgium 28171 C 3151 3151
278 Belgium 28172 T 3151 3150
279 Belgium 28173 A 3151 3151
280 Belgium 28174 A 3151 3151
281 Belgium 28175 A 3151 3151
282 Belgium 28176 T 3151 3151
283 Belgium 28177 T 3151 3151
284 Belgium 28178 G T 3151 3149 Leu95Phe
285 Belgium 28179 G 3151 3151
286 Belgium 28180 G 3150 3150
287 Belgium 28181 T 3150 3150
288 Belgium 28182 A 3150 3150
289 Belgium 28183 G T 3150 3149 Ser97Ile
290 Belgium 28184 T 3150 3150
291 Belgium 28185 C 3150 3150
292 Belgium 28186 T 3150 3150
293 Belgium 28187 T 3150 3150
294 Belgium 28188 G 3149 3149
295 Belgium 28189 T 3149 3149
296 Belgium 28190 A 3149 3149
297 Belgium 28191 G 3149 3149
298 Belgium 28192 T 3149 3149
299 Belgium 28193 G 3149 3148
300 Belgium 28194 C 3148 3148
301 Belgium 28195 G 3148 3148
302 Belgium 28196 T 3148 3148
303 Belgium 28197 T 3148 3148
304 Belgium 28198 G T 3148 3144 Cys102Phe
305 Belgium 28199 T 3148 3148
306 Belgium 28200 T 3148 3148
307 Belgium 28201 C 3148 3148
308 Belgium 28202 G 3147 3147
309 Belgium 28203 T 3147 3147
310 Belgium 28204 T 3147 3147
311 Belgium 28205 C 3147 3147
312 Belgium 28206 T 3147 3147
313 Belgium 28207 A 3147 3147
314 Belgium 28208 T 3147 3147
315 Belgium 28209 G 3147 3147
316 Belgium 28210 A 3147 3147
317 Belgium 28211 A 3147 3147
318 Belgium 28212 G 3147 3147
319 Belgium 28213 A 3147 3147
320 Belgium 28214 C A 3147 3144 Asp107Glu
321 Belgium 28215 T 3147 3147
322 Belgium 28216 T 3147 3147
323 Belgium 28217 T 3147 3147
324 Belgium 28218 T 3147 3147
325 Belgium 28219 T 3147 3147
326 Belgium 28220 A 3147 3147
327 Belgium 28221 G T 3147 3146 Glu110*
328 Belgium 28222 A 3147 3147
329 Belgium 28223 G 3147 3147
330 Belgium 28224 T 3147 3147
331 Belgium 28225 A T,G 3147 3144 Tyr111Phe-p.Tyr111Cys
332 Belgium 28226 T 3147 3147
333 Belgium 28227 C 3147 3147
334 Belgium 28228 A 3147 3147
335 Belgium 28229 T 3147 3147
336 Belgium 28230 G 3147 3147
337 Belgium 28231 A 3147 3147
338 Belgium 28232 C 3147 3147
339 Belgium 28233 G 3147 3147
340 Belgium 28234 T 3147 3147
341 Belgium 28235 T 3147 3147
342 Belgium 28236 C T 3147 3146 Arg115Cys
343 Belgium 28237 G 3147 3147
344 Belgium 28238 T 3147 3147
345 Belgium 28239 G 3147 3147
346 Belgium 28240 T 3147 3147
347 Belgium 28241 T 3147 3147
348 Belgium 28242 G 3147 3147
349 Belgium 28243 T 3147 3147
350 Belgium 28244 T 3147 3147
351 Belgium 28245 T G 3147 3146 Leu118Val
352 Belgium 28246 T 3147 3147
353 Belgium 28247 A 3147 3147
354 Belgium 28248 G 3147 3147
355 Belgium 28249 A G 3147 3142 Asp119Gly
356 Belgium 28250 T 3147 3147
357 Belgium 28251 T G 3143 3142 Phe120Val
358 Belgium 28252 T 3143 3143
359 Belgium 28253 C T 3143 3120 Phe120Phe
360 Belgium 28254 A 3143 3143
361 Belgium 28255 T 3143 3143
362 Belgium 28256 C 3143 3143
363 Belgium 28257 T 3143 3143
364 Belgium 28258 A 3143 3143
365 Belgium 28259 A 3143 3143