National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                   1    
C     21                                        
D     22           1                            
E     18                                        
F     24         1                              
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                 1                      
R     12                                        
S     27                                        
T     15               1                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Belarus 27894 A 32 32
1 Belarus 27895 T 32 32
2 Belarus 27896 G 32 32
3 Belarus 27897 A 32 32
4 Belarus 27898 A 32 32
5 Belarus 27899 A 32 32
6 Belarus 27900 T 32 32
7 Belarus 27901 T 32 32
8 Belarus 27902 T 32 32
9 Belarus 27903 C 32 32
10 Belarus 27904 T 32 32
11 Belarus 27905 T 32 32
12 Belarus 27906 G 32 32
13 Belarus 27907 T 32 32
14 Belarus 27908 T 32 32
15 Belarus 27909 T 32 32
16 Belarus 27910 T 32 32
17 Belarus 27911 C 32 32
18 Belarus 27912 T 32 32
19 Belarus 27913 T 32 32
20 Belarus 27914 A 32 32
21 Belarus 27915 G 32 32
22 Belarus 27916 G 32 32
23 Belarus 27917 A 32 32
24 Belarus 27918 A 32 32
25 Belarus 27919 T 32 32
26 Belarus 27920 C 32 32
27 Belarus 27921 A 32 32
28 Belarus 27922 T 32 32
29 Belarus 27923 C 32 32
30 Belarus 27924 A 32 32
31 Belarus 27925 C 32 32
32 Belarus 27926 A 32 32
33 Belarus 27927 A 32 32
34 Belarus 27928 C 32 32
35 Belarus 27929 T 32 32
36 Belarus 27930 G 32 32
37 Belarus 27931 T 32 32
38 Belarus 27932 A 32 32
39 Belarus 27933 G 32 32
40 Belarus 27934 C 32 32
41 Belarus 27935 T 32 32
42 Belarus 27936 G 32 32
43 Belarus 27937 C 32 32
44 Belarus 27938 A 32 32
45 Belarus 27939 T 32 32
46 Belarus 27940 T 32 32
47 Belarus 27941 T 32 32
48 Belarus 27942 C 32 32
49 Belarus 27943 A 32 32
50 Belarus 27944 C 32 32
51 Belarus 27945 C 32 32
52 Belarus 27946 A 32 32
53 Belarus 27947 A 32 32
54 Belarus 27948 G 32 32
55 Belarus 27949 A 32 32
56 Belarus 27950 A 32 32
57 Belarus 27951 T 32 32
58 Belarus 27952 G 32 32
59 Belarus 27953 T 32 32
60 Belarus 27954 A 32 32
61 Belarus 27955 G 32 32
62 Belarus 27956 T 32 32
63 Belarus 27957 T 32 32
64 Belarus 27958 T 32 32
65 Belarus 27959 A 32 32
66 Belarus 27960 C 32 32
67 Belarus 27961 A 32 32
68 Belarus 27962 G 32 32
69 Belarus 27963 T 32 32
70 Belarus 27964 C 32 32
71 Belarus 27965 A 32 32
72 Belarus 27966 T 32 32
73 Belarus 27967 G 32 32
74 Belarus 27968 T 32 32
75 Belarus 27969 A 32 32
76 Belarus 27970 C 32 32
77 Belarus 27971 T 32 32
78 Belarus 27972 C A 32 31 Gln27Lys
79 Belarus 27973 A 32 32
80 Belarus 27974 A 32 32
81 Belarus 27975 C 32 32
82 Belarus 27976 A 32 32
83 Belarus 27977 T 32 32
84 Belarus 27978 C 32 32
85 Belarus 27979 A 32 32
86 Belarus 27980 A 32 32
87 Belarus 27981 C 32 32
88 Belarus 27982 C 32 32
89 Belarus 27983 A 32 32
90 Belarus 27984 T 32 32
91 Belarus 27985 A 32 32
92 Belarus 27986 T 32 32
93 Belarus 27987 G 32 32
94 Belarus 27988 T 32 32
95 Belarus 27989 A 32 32
96 Belarus 27990 G 32 32
97 Belarus 27991 T 32 32
98 Belarus 27992 T 32 32
99 Belarus 27993 G 32 32
100 Belarus 27994 A 32 32
101 Belarus 27995 T 32 32
102 Belarus 27996 G 32 32
103 Belarus 27997 A 32 32
104 Belarus 27998 C 32 32
105 Belarus 27999 C 32 32
106 Belarus 28000 C 32 32
107 Belarus 28001 G 32 32
108 Belarus 28002 T 32 32
109 Belarus 28003 G 32 32
110 Belarus 28004 T 32 32
111 Belarus 28005 C 32 32
112 Belarus 28006 C 32 32
113 Belarus 28007 T 32 32
114 Belarus 28008 A 32 32
115 Belarus 28009 T 32 32
116 Belarus 28010 T 32 32
117 Belarus 28011 C 32 32
118 Belarus 28012 A 32 32
119 Belarus 28013 C 32 32
120 Belarus 28014 T 32 32
121 Belarus 28015 T 32 32
122 Belarus 28016 C 32 32
123 Belarus 28017 T 32 32
124 Belarus 28018 A 32 32
125 Belarus 28019 T 32 32
126 Belarus 28020 T 32 32
127 Belarus 28021 C 32 32
128 Belarus 28022 T 32 32
129 Belarus 28023 A 32 32
130 Belarus 28024 A 32 32
131 Belarus 28025 A 32 32
132 Belarus 28026 T 32 32
133 Belarus 28027 G 32 32
134 Belarus 28028 G 32 32
135 Belarus 28029 T 32 32
136 Belarus 28030 A 32 32
137 Belarus 28031 T 32 32
138 Belarus 28032 A 32 32
139 Belarus 28033 T 32 32
140 Belarus 28034 T 32 32
141 Belarus 28035 A 32 32
142 Belarus 28036 G 32 32
143 Belarus 28037 A 32 32
144 Belarus 28038 G 32 32
145 Belarus 28039 T 32 32
146 Belarus 28040 A 32 32
147 Belarus 28041 G 32 32
148 Belarus 28042 G 32 32
149 Belarus 28043 A 32 32
150 Belarus 28044 G 32 32
151 Belarus 28045 C T 32 31 Ala51Val
152 Belarus 28046 T 32 32
153 Belarus 28047 A 32 32
154 Belarus 28048 G 32 32
155 Belarus 28049 A 32 32
156 Belarus 28050 A 32 32
157 Belarus 28051 A 32 32
158 Belarus 28052 A 32 32
159 Belarus 28053 T 32 32
160 Belarus 28054 C 32 32
161 Belarus 28055 A 32 32
162 Belarus 28056 G 32 32
163 Belarus 28057 C 32 32
164 Belarus 28058 A 32 32
165 Belarus 28059 C 32 32
166 Belarus 28060 C 32 32
167 Belarus 28061 T 32 32
168 Belarus 28062 T 32 32
169 Belarus 28063 T 32 32
170 Belarus 28064 A 32 32
171 Belarus 28065 A 32 32
172 Belarus 28066 T 32 32
173 Belarus 28067 T 32 32
174 Belarus 28068 G 32 32
175 Belarus 28069 A 32 32
176 Belarus 28070 A 32 32
177 Belarus 28071 T 32 32
178 Belarus 28072 T 32 32
179 Belarus 28073 G 32 32
180 Belarus 28074 T 31 31
181 Belarus 28075 G 31 31
182 Belarus 28076 C 31 31
183 Belarus 28077 G 31 31
184 Belarus 28078 T 31 31
185 Belarus 28079 G 31 31
186 Belarus 28080 G 31 31
187 Belarus 28081 A G 31 28 Asp63Gly
188 Belarus 28082 T 31 31
189 Belarus 28083 G 31 31
190 Belarus 28084 A 31 31
191 Belarus 28085 G 31 31
192 Belarus 28086 G 31 31
193 Belarus 28087 C 31 31
194 Belarus 28088 T 31 31
195 Belarus 28089 G 31 31
196 Belarus 28090 G 31 31
197 Belarus 28091 T 31 31
198 Belarus 28092 T 31 31
199 Belarus 28093 C 31 31
200 Belarus 28094 T 31 31
201 Belarus 28095 A 31 31
202 Belarus 28096 A 31 31
203 Belarus 28097 A 31 31
204 Belarus 28098 T 31 31
205 Belarus 28099 C 31 31
206 Belarus 28100 A 31 31
207 Belarus 28101 C 31 31
208 Belarus 28102 C 31 31
209 Belarus 28103 C 31 31
210 Belarus 28104 A 31 31
211 Belarus 28105 T 31 31
212 Belarus 28106 T 31 31
213 Belarus 28107 C 31 31
214 Belarus 28108 A 31 31
215 Belarus 28109 G 31 31
216 Belarus 28110 T 31 31
217 Belarus 28111 A 31 31
218 Belarus 28112 C 31 31
219 Belarus 28113 A 31 31
220 Belarus 28114 T 31 31
221 Belarus 28115 C 31 31
222 Belarus 28116 G 31 31
223 Belarus 28117 A 31 31
224 Belarus 28118 T 31 31
225 Belarus 28119 A 31 31
226 Belarus 28120 T 31 31
227 Belarus 28121 C 31 31
228 Belarus 28122 G 31 31
229 Belarus 28123 G 31 31
230 Belarus 28124 T 31 31
231 Belarus 28125 A 31 31
232 Belarus 28126 A 31 31
233 Belarus 28127 T 31 31
234 Belarus 28128 T 31 31
235 Belarus 28129 A 31 31
236 Belarus 28130 T 31 31
237 Belarus 28131 A 31 31
238 Belarus 28132 C 31 31
239 Belarus 28133 A 31 31
240 Belarus 28134 G 32 32
241 Belarus 28135 T 32 32
242 Belarus 28136 T 32 32
243 Belarus 28137 T 32 32
244 Belarus 28138 C 32 32
245 Belarus 28139 C 32 32
246 Belarus 28140 T 32 32
247 Belarus 28141 G 32 32
248 Belarus 28142 T 32 32
249 Belarus 28143 T 32 32
250 Belarus 28144 T 32 32
251 Belarus 28145 A 32 31
252 Belarus 28146 C 32 31
253 Belarus 28147 C 32 31
254 Belarus 28148 T 32 31
255 Belarus 28149 T 32 32
256 Belarus 28150 T 32 32
257 Belarus 28151 T 32 32
258 Belarus 28152 A 32 32
259 Belarus 28153 C T 32 31 Thr87Ile
260 Belarus 28154 A 32 32
261 Belarus 28155 A 32 32
262 Belarus 28156 T 32 32
263 Belarus 28157 T 32 32
264 Belarus 28158 A 32 32
265 Belarus 28159 A 32 32
266 Belarus 28160 T 32 32
267 Belarus 28161 T 32 32
268 Belarus 28162 G 32 32
269 Belarus 28163 C 32 32
270 Belarus 28164 C 32 32
271 Belarus 28165 A 32 32
272 Belarus 28166 G 32 32
273 Belarus 28167 G 32 32
274 Belarus 28168 A 32 32
275 Belarus 28169 A 32 32
276 Belarus 28170 C 32 32
277 Belarus 28171 C 32 32
278 Belarus 28172 T 32 32
279 Belarus 28173 A 32 32
280 Belarus 28174 A 32 32
281 Belarus 28175 A 32 32
282 Belarus 28176 T 32 32
283 Belarus 28177 T 32 32
284 Belarus 28178 G 32 32
285 Belarus 28179 G 32 32
286 Belarus 28180 G 32 32
287 Belarus 28181 T 32 32
288 Belarus 28182 A 32 32
289 Belarus 28183 G 32 32
290 Belarus 28184 T 32 32
291 Belarus 28185 C 32 32
292 Belarus 28186 T 32 32
293 Belarus 28187 T 32 32
294 Belarus 28188 G 32 32
295 Belarus 28189 T 32 32
296 Belarus 28190 A 32 32
297 Belarus 28191 G 32 32
298 Belarus 28192 T 32 32
299 Belarus 28193 G 32 32
300 Belarus 28194 C 32 32
301 Belarus 28195 G 32 32
302 Belarus 28196 T 32 32
303 Belarus 28197 T 32 32
304 Belarus 28198 G 32 32
305 Belarus 28199 T 32 32
306 Belarus 28200 T 32 32
307 Belarus 28201 C 32 32
308 Belarus 28202 G 32 32
309 Belarus 28203 T 32 32
310 Belarus 28204 T 32 32
311 Belarus 28205 C 32 32
312 Belarus 28206 T 32 32
313 Belarus 28207 A 32 32
314 Belarus 28208 T 32 32
315 Belarus 28209 G 32 32
316 Belarus 28210 A 32 32
317 Belarus 28211 A 32 32
318 Belarus 28212 G 32 32
319 Belarus 28213 A 32 32
320 Belarus 28214 C 32 32
321 Belarus 28215 T 32 32
322 Belarus 28216 T 32 32
323 Belarus 28217 T 32 32
324 Belarus 28218 T 32 32
325 Belarus 28219 T 32 32
326 Belarus 28220 A 32 32
327 Belarus 28221 G 32 32
328 Belarus 28222 A 32 32
329 Belarus 28223 G 32 32
330 Belarus 28224 T 32 32
331 Belarus 28225 A 32 32
332 Belarus 28226 T 32 32
333 Belarus 28227 C 32 32
334 Belarus 28228 A 32 32
335 Belarus 28229 T 32 32
336 Belarus 28230 G 32 32
337 Belarus 28231 A 32 32
338 Belarus 28232 C 32 32
339 Belarus 28233 G 32 32
340 Belarus 28234 T 32 32
341 Belarus 28235 T 32 32
342 Belarus 28236 C 32 32
343 Belarus 28237 G 32 32
344 Belarus 28238 T 32 32
345 Belarus 28239 G 32 32
346 Belarus 28240 T 32 32
347 Belarus 28241 T 32 32
348 Belarus 28242 G 32 32
349 Belarus 28243 T 32 32
350 Belarus 28244 T 32 32
351 Belarus 28245 T 32 32
352 Belarus 28246 T 32 32
353 Belarus 28247 A 32 32
354 Belarus 28248 G 32 32
355 Belarus 28249 A 32 32
356 Belarus 28250 T 32 32
357 Belarus 28251 T 32 32
358 Belarus 28252 T 32 32
359 Belarus 28253 C T 32 31 Phe120Phe
360 Belarus 28254 A 32 32
361 Belarus 28255 T 32 32
362 Belarus 28256 C 32 32
363 Belarus 28257 T 32 32
364 Belarus 28258 A 32 32
365 Belarus 28259 A 32 32