National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     365                                        
?                                              
A     15                               1   1    
C     21   1     1                   1          
D     22     2                 1                
E 3   18     2 1         1                      
F     24         1                              
G     15   2                                    
H     12             1     1                    
I     30               1                 1 1    
K     15                                        
L     30         1                     1        
M     3                                        
N     6                                        
P     21                   1     2   1 1        
Q 2   18       1                                
R     12               1                        
S     27         1               2              
T     15               2 1               1      
V     35                   3 1             1    
W     3                                        
Y     21   1                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 27894 A 622 622
1 Bangladesh 27895 T 622 622
2 Bangladesh 27896 G 622 622
3 Bangladesh 27897 A 622 622
4 Bangladesh 27898 A 622 622
5 Bangladesh 27899 A 622 622
6 Bangladesh 27900 T 622 622
7 Bangladesh 27901 T 622 622
8 Bangladesh 27902 T 622 622
9 Bangladesh 27903 C 622 622
10 Bangladesh 27904 T 622 622
11 Bangladesh 27905 T 622 622
12 Bangladesh 27906 G 622 622
13 Bangladesh 27907 T 622 622
14 Bangladesh 27908 T 622 622
15 Bangladesh 27909 T 622 622
16 Bangladesh 27910 T 622 622
17 Bangladesh 27911 C 622 622
18 Bangladesh 27912 T 622 622
19 Bangladesh 27913 T 622 622
20 Bangladesh 27914 A 622 622
21 Bangladesh 27915 G 623 623
22 Bangladesh 27916 G 623 623
23 Bangladesh 27917 A 623 623
24 Bangladesh 27918 A 623 623
25 Bangladesh 27919 T 623 623
26 Bangladesh 27920 C 623 623
27 Bangladesh 27921 A 623 623
28 Bangladesh 27922 T 623 623
29 Bangladesh 27923 C 623 623
30 Bangladesh 27924 A 623 623
31 Bangladesh 27925 C T,A 623 621 Thr11Ile-p.Thr11Lys
32 Bangladesh 27926 A 623 623
33 Bangladesh 27927 A 623 623
34 Bangladesh 27928 C 623 623
35 Bangladesh 27929 T 623 623
36 Bangladesh 27930 G 623 623
37 Bangladesh 27931 T 623 623
38 Bangladesh 27932 A 623 623
39 Bangladesh 27933 G 622 622
40 Bangladesh 27934 C 622 621
41 Bangladesh 27935 T 622 621
42 Bangladesh 27936 G 622 621
43 Bangladesh 27937 C 622 621
44 Bangladesh 27938 A 622 621
45 Bangladesh 27939 T 622 621
46 Bangladesh 27940 T 622 621
47 Bangladesh 27941 T 622 621
48 Bangladesh 27942 C 622 621
49 Bangladesh 27943 A 622 621
50 Bangladesh 27944 C T 622 620 His17His
51 Bangladesh 27945 C T,G 622 619 Gln18*-p.Gln18Glu
52 Bangladesh 27946 A 622 621
53 Bangladesh 27947 A 622 621
54 Bangladesh 27948 G 622 621
55 Bangladesh 27949 A 622 621
56 Bangladesh 27950 A 622 621
57 Bangladesh 27951 T 622 621
58 Bangladesh 27952 G 622 621
59 Bangladesh 27953 T 622 621
60 Bangladesh 27954 A 622 621
61 Bangladesh 27955 G 622 621
62 Bangladesh 27956 T 622 621
63 Bangladesh 27957 T 622 622
64 Bangladesh 27958 T 622 622
65 Bangladesh 27959 A 622 622
66 Bangladesh 27960 C 622 622
67 Bangladesh 27961 A 622 622
68 Bangladesh 27962 G 622 622
69 Bangladesh 27963 T 622 622
70 Bangladesh 27964 C 622 622
71 Bangladesh 27965 A 622 622
72 Bangladesh 27966 T 622 622
73 Bangladesh 27967 G T 622 621 Cys25Phe
74 Bangladesh 27968 T 622 622
75 Bangladesh 27969 A 622 622
76 Bangladesh 27970 C 622 622
77 Bangladesh 27971 T G 622 621 Thr26Thr
78 Bangladesh 27972 C T 622 619 Gln27*
79 Bangladesh 27973 A 622 622
80 Bangladesh 27974 A 622 622
81 Bangladesh 27975 C 622 622
82 Bangladesh 27976 A T 622 620 His28Leu
83 Bangladesh 27977 T 622 622
84 Bangladesh 27978 C 622 622
85 Bangladesh 27979 A 622 622
86 Bangladesh 27980 A 622 622
87 Bangladesh 27981 C 622 622
88 Bangladesh 27982 C 622 622
89 Bangladesh 27983 A 622 622
90 Bangladesh 27984 T 622 622
91 Bangladesh 27985 A 622 622
92 Bangladesh 27986 T 622 622
93 Bangladesh 27987 G T 622 621 Val32Leu
94 Bangladesh 27988 T 622 622
95 Bangladesh 27989 A 622 622
96 Bangladesh 27990 G 622 622
97 Bangladesh 27991 T 622 622
98 Bangladesh 27992 T 622 622
99 Bangladesh 27993 G 622 622
100 Bangladesh 27994 A 622 622
101 Bangladesh 27995 T 622 622
102 Bangladesh 27996 G 622 622
103 Bangladesh 27997 A 622 622
104 Bangladesh 27998 C T 622 619 Asp35Asp
105 Bangladesh 27999 C T 622 620 Pro36Ser
106 Bangladesh 28000 C 622 622
107 Bangladesh 28001 G T,C 622 618 Pro36Pro-p.Pro36Pro
108 Bangladesh 28002 T 622 622
109 Bangladesh 28003 G 622 621
110 Bangladesh 28004 T 622 622
111 Bangladesh 28005 C 622 622
112 Bangladesh 28006 C G 622 619 Pro38Arg
113 Bangladesh 28007 T 622 622
114 Bangladesh 28008 A G 622 621 Ile39Val
115 Bangladesh 28009 T 622 622
116 Bangladesh 28010 T 622 622
117 Bangladesh 28011 C 622 622
118 Bangladesh 28012 A 622 622
119 Bangladesh 28013 C 622 622
120 Bangladesh 28014 T 622 622
121 Bangladesh 28015 T 622 622
122 Bangladesh 28016 C 622 622
123 Bangladesh 28017 T 622 622
124 Bangladesh 28018 A 622 622
125 Bangladesh 28019 T 622 622
126 Bangladesh 28020 T 622 622
127 Bangladesh 28021 C 622 622
128 Bangladesh 28022 T 622 622
129 Bangladesh 28023 A 622 622
130 Bangladesh 28024 A 622 622
131 Bangladesh 28025 A 622 622
132 Bangladesh 28026 T 622 622
133 Bangladesh 28027 G 622 622
134 Bangladesh 28028 G 622 622
135 Bangladesh 28029 T 622 622
136 Bangladesh 28030 A 622 622
137 Bangladesh 28031 T 622 622
138 Bangladesh 28032 A 622 622
139 Bangladesh 28033 T 622 622
140 Bangladesh 28034 T 622 622
141 Bangladesh 28035 A 622 622
142 Bangladesh 28036 G 622 622
143 Bangladesh 28037 A 622 622
144 Bangladesh 28038 G 622 622
145 Bangladesh 28039 T 622 622
146 Bangladesh 28040 A 622 622
147 Bangladesh 28041 G 622 622
148 Bangladesh 28042 G 622 622
149 Bangladesh 28043 A 622 622
150 Bangladesh 28044 G 622 622
151 Bangladesh 28045 C 622 622
152 Bangladesh 28046 T 622 622
153 Bangladesh 28047 A 622 622
154 Bangladesh 28048 G T 622 621 Arg52Ile
155 Bangladesh 28049 A 622 621
156 Bangladesh 28050 A 622 622
157 Bangladesh 28051 A 622 622
158 Bangladesh 28052 A 622 622
159 Bangladesh 28053 T C 622 621 Ser54Pro
160 Bangladesh 28054 C 622 622
161 Bangladesh 28055 A 622 622
162 Bangladesh 28056 G 622 622
163 Bangladesh 28057 C 622 622
164 Bangladesh 28058 A 622 621
165 Bangladesh 28059 C 622 622
166 Bangladesh 28060 C 622 622
167 Bangladesh 28061 T 622 622
168 Bangladesh 28062 T 622 622
169 Bangladesh 28063 T 622 622
170 Bangladesh 28064 A 622 621
171 Bangladesh 28065 A 622 622
172 Bangladesh 28066 T 622 622
173 Bangladesh 28067 T 622 621
174 Bangladesh 28068 G A,T 622 618 Glu59*-p.Glu59Lys
175 Bangladesh 28069 A 622 622
176 Bangladesh 28070 A 622 622
177 Bangladesh 28071 T 622 622
178 Bangladesh 28072 T 622 622
179 Bangladesh 28073 G 622 622
180 Bangladesh 28074 T 622 622
181 Bangladesh 28075 G 622 621
182 Bangladesh 28076 C T 622 618 Cys61Cys
183 Bangladesh 28077 G T,C,A 622 617 Val62Leu-p.Val62Met
184 Bangladesh 28078 T 622 621
185 Bangladesh 28079 G T 622 613 Val62Val
186 Bangladesh 28080 G A 622 620 Asp63Asn
187 Bangladesh 28081 A 622 621
188 Bangladesh 28082 T C 622 619 Asp63Asp
189 Bangladesh 28083 G T 622 613 Glu64*
190 Bangladesh 28084 A 622 621
191 Bangladesh 28085 G T,A 622 618 Glu64Asp-p.Glu64Glu
192 Bangladesh 28086 G T 622 620 Ala65Ser
193 Bangladesh 28087 C T 622 619 Ala65Val
194 Bangladesh 28088 T 622 621
195 Bangladesh 28089 G T 622 620 Gly66Cys
196 Bangladesh 28090 G 622 620
197 Bangladesh 28091 T 622 620
198 Bangladesh 28092 T 622 620
199 Bangladesh 28093 C T 622 619 Ser67Phe
200 Bangladesh 28094 T 622 620
201 Bangladesh 28095 A 622 620
202 Bangladesh 28096 A 622 621
203 Bangladesh 28097 A 622 621
204 Bangladesh 28098 T 622 621
205 Bangladesh 28099 C 622 621
206 Bangladesh 28100 A 622 621
207 Bangladesh 28101 C 622 621
208 Bangladesh 28102 C 622 621
209 Bangladesh 28103 C 622 621
210 Bangladesh 28104 A 622 621
211 Bangladesh 28105 T 671 671
212 Bangladesh 28106 T 671 671
213 Bangladesh 28107 C 671 671
214 Bangladesh 28108 A 671 671
215 Bangladesh 28109 G 671 671
216 Bangladesh 28110 T 671 671
217 Bangladesh 28111 A G 671 670 Tyr73Cys
218 Bangladesh 28112 C 671 671
219 Bangladesh 28113 A 671 671
220 Bangladesh 28114 T 671 671
221 Bangladesh 28115 C T 671 670 Ile74Ile
222 Bangladesh 28116 G 671 671
223 Bangladesh 28117 A 672 672
224 Bangladesh 28118 T 672 672
225 Bangladesh 28119 A 672 672
226 Bangladesh 28120 T C 672 671 Ile76Thr
227 Bangladesh 28121 C 671 671
228 Bangladesh 28122 G T 671 667 Gly77Cys
229 Bangladesh 28123 G 671 671
230 Bangladesh 28124 T 671 671
231 Bangladesh 28125 A 671 671
232 Bangladesh 28126 A 671 671
233 Bangladesh 28127 T 672 672
234 Bangladesh 28128 T 673 673
235 Bangladesh 28129 A 673 673
236 Bangladesh 28130 T 673 673
237 Bangladesh 28131 A 673 673
238 Bangladesh 28132 C T 673 672 Thr80Ile
239 Bangladesh 28133 A 673 673
240 Bangladesh 28134 G 674 674
241 Bangladesh 28135 T 674 674
242 Bangladesh 28136 T 674 674
243 Bangladesh 28137 T 674 674
244 Bangladesh 28138 C 674 674
245 Bangladesh 28139 C 674 674
246 Bangladesh 28140 T 674 674
247 Bangladesh 28141 G 674 674
248 Bangladesh 28142 T 674 674
249 Bangladesh 28143 T 674 674
250 Bangladesh 28144 T C 674 669 Leu84Ser
251 Bangladesh 28145 A 674 674
252 Bangladesh 28146 C 673 673
253 Bangladesh 28147 C 673 673
254 Bangladesh 28148 T 673 673
255 Bangladesh 28149 T 673 673
256 Bangladesh 28150 T 673 673
257 Bangladesh 28151 T 673 673
258 Bangladesh 28152 A 673 673
259 Bangladesh 28153 C 673 672
260 Bangladesh 28154 A 673 673
261 Bangladesh 28155 A 673 673
262 Bangladesh 28156 T 673 673
263 Bangladesh 28157 T 673 673
264 Bangladesh 28158 A 673 673
265 Bangladesh 28159 A 673 673
266 Bangladesh 28160 T 673 673
267 Bangladesh 28161 T 673 673
268 Bangladesh 28162 G 673 673
269 Bangladesh 28163 C 673 673
270 Bangladesh 28164 C 673 673
271 Bangladesh 28165 A 673 673
272 Bangladesh 28166 G 673 673
273 Bangladesh 28167 G 673 673
274 Bangladesh 28168 A 673 673
275 Bangladesh 28169 A 673 673
276 Bangladesh 28170 C 673 673
277 Bangladesh 28171 C T 673 672 Pro93Leu
278 Bangladesh 28172 T 673 673
279 Bangladesh 28173 A 673 673
280 Bangladesh 28174 A 673 673
281 Bangladesh 28175 A 673 673
282 Bangladesh 28176 T 673 673
283 Bangladesh 28177 T 673 673
284 Bangladesh 28178 G T 673 670 Leu95Phe
285 Bangladesh 28179 G 673 673
286 Bangladesh 28180 G 673 673
287 Bangladesh 28181 T 673 673
288 Bangladesh 28182 A 673 673
289 Bangladesh 28183 G 673 673
290 Bangladesh 28184 T 673 673
291 Bangladesh 28185 C 673 673
292 Bangladesh 28186 T 673 673
293 Bangladesh 28187 T 673 673
294 Bangladesh 28188 G 673 672
295 Bangladesh 28189 T 673 673
296 Bangladesh 28190 A 673 673
297 Bangladesh 28191 G 673 673
298 Bangladesh 28192 T 673 673
299 Bangladesh 28193 G 673 673
300 Bangladesh 28194 C 673 673
301 Bangladesh 28195 G 673 673
302 Bangladesh 28196 T 673 673
303 Bangladesh 28197 T C 673 672 Cys102Arg
304 Bangladesh 28198 G 673 673
305 Bangladesh 28199 T 673 673
306 Bangladesh 28200 T C 673 670 Ser103Pro
307 Bangladesh 28201 C 673 672
308 Bangladesh 28202 G 673 672
309 Bangladesh 28203 T 673 672
310 Bangladesh 28204 T 673 672
311 Bangladesh 28205 C 673 672
312 Bangladesh 28206 T 673 672
313 Bangladesh 28207 A 673 672
314 Bangladesh 28208 T C 673 671 Tyr105Tyr
315 Bangladesh 28209 G T 673 671 Glu106*
316 Bangladesh 28210 A 673 672
317 Bangladesh 28211 A 673 672
318 Bangladesh 28212 G 673 672
319 Bangladesh 28213 A 673 673
320 Bangladesh 28214 C 673 672
321 Bangladesh 28215 T 673 673
322 Bangladesh 28216 T 673 672
323 Bangladesh 28217 T 673 673
324 Bangladesh 28218 T 674 674
325 Bangladesh 28219 T 674 674
326 Bangladesh 28220 A 674 674
327 Bangladesh 28221 G 674 674
328 Bangladesh 28222 A 674 674
329 Bangladesh 28223 G T 674 672 Glu110Asp
330 Bangladesh 28224 T 674 674
331 Bangladesh 28225 A 674 674
332 Bangladesh 28226 T 674 673
333 Bangladesh 28227 C 674 674
334 Bangladesh 28228 A 674 674
335 Bangladesh 28229 T 674 674
336 Bangladesh 28230 G 674 674
337 Bangladesh 28231 A 674 674
338 Bangladesh 28232 C 674 674
339 Bangladesh 28233 G 674 674
340 Bangladesh 28234 T 674 674
341 Bangladesh 28235 T 674 674
342 Bangladesh 28236 C 674 674
343 Bangladesh 28237 G 674 674
344 Bangladesh 28238 T 674 674
345 Bangladesh 28239 G 674 674
346 Bangladesh 28240 T 674 674
347 Bangladesh 28241 T 674 674
348 Bangladesh 28242 G 674 674
349 Bangladesh 28243 T 674 674
350 Bangladesh 28244 T 674 674
351 Bangladesh 28245 T 674 673
352 Bangladesh 28246 T 674 673
353 Bangladesh 28247 A 674 673
354 Bangladesh 28248 G 674 673
355 Bangladesh 28249 A 674 674
356 Bangladesh 28250 T 674 674
357 Bangladesh 28251 T 674 674
358 Bangladesh 28252 T 674 674
359 Bangladesh 28253 C T 674 665 Phe120Phe
360 Bangladesh 28254 A 674 673
361 Bangladesh 28255 T 673 673
362 Bangladesh 28256 C 673 673
363 Bangladesh 28257 T 671 671
364 Bangladesh 28258 A 671 671
365 Bangladesh 28259 A 671 671