National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21         1                              
D     22                                        
E     18                 1                      
F     24         1                              
G 1   15                                        
H     12                                        
I     30               1                 1      
K     15                                        
L     30         1                     1        
M     3                                        
N     6                                        
P     21                         1              
Q     18                                        
R     12                                        
S     27         1                     1        
T     15               1                        
V     36                   1                    
W     3                   1                    
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bahrain 27894 A 150 150
1 Bahrain 27895 T 150 150
2 Bahrain 27896 G 150 150
3 Bahrain 27897 A 150 150
4 Bahrain 27898 A 150 150
5 Bahrain 27899 A 150 150
6 Bahrain 27900 T 150 150
7 Bahrain 27901 T 150 150
8 Bahrain 27902 T 150 150
9 Bahrain 27903 C 150 150
10 Bahrain 27904 T 150 150
11 Bahrain 27905 T 150 150
12 Bahrain 27906 G 150 150
13 Bahrain 27907 T 150 150
14 Bahrain 27908 T 150 150
15 Bahrain 27909 T 150 150
16 Bahrain 27910 T 150 150
17 Bahrain 27911 C 150 150
18 Bahrain 27912 T 150 150
19 Bahrain 27913 T 150 150
20 Bahrain 27914 A 150 150
21 Bahrain 27915 G T 150 149 Gly8*
22 Bahrain 27916 G 150 150
23 Bahrain 27917 A 150 150
24 Bahrain 27918 A 150 150
25 Bahrain 27919 T 150 150
26 Bahrain 27920 C T 150 148 Ile9Ile
27 Bahrain 27921 A 150 150
28 Bahrain 27922 T 150 150
29 Bahrain 27923 C 150 149
30 Bahrain 27924 A 150 150
31 Bahrain 27925 C T 150 149 Thr11Ile
32 Bahrain 27926 A 150 150
33 Bahrain 27927 A 150 150
34 Bahrain 27928 C 150 150
35 Bahrain 27929 T 150 150
36 Bahrain 27930 G 150 150
37 Bahrain 27931 T 150 150
38 Bahrain 27932 A 150 150
39 Bahrain 27933 G 150 150
40 Bahrain 27934 C 150 150
41 Bahrain 27935 T 150 150
42 Bahrain 27936 G 150 150
43 Bahrain 27937 C 150 150
44 Bahrain 27938 A 150 150
45 Bahrain 27939 T 150 150
46 Bahrain 27940 T 150 150
47 Bahrain 27941 T 150 150
48 Bahrain 27942 C 150 150
49 Bahrain 27943 A 150 150
50 Bahrain 27944 C 150 150
51 Bahrain 27945 C 150 150
52 Bahrain 27946 A 150 150
53 Bahrain 27947 A 150 150
54 Bahrain 27948 G 150 150
55 Bahrain 27949 A 150 150
56 Bahrain 27950 A 150 150
57 Bahrain 27951 T 150 150
58 Bahrain 27952 G 150 150
59 Bahrain 27953 T 150 150
60 Bahrain 27954 A 150 150
61 Bahrain 27955 G 150 150
62 Bahrain 27956 T 150 150
63 Bahrain 27957 T 150 150
64 Bahrain 27958 T 150 150
65 Bahrain 27959 A 150 150
66 Bahrain 27960 C 150 150
67 Bahrain 27961 A 150 150
68 Bahrain 27962 G 150 150
69 Bahrain 27963 T 150 150
70 Bahrain 27964 C 150 150
71 Bahrain 27965 A T 150 136 Ser24Ser
72 Bahrain 27966 T 150 150
73 Bahrain 27967 G 150 150
74 Bahrain 27968 T 150 150
75 Bahrain 27969 A 150 150
76 Bahrain 27970 C 150 150
77 Bahrain 27971 T 150 150
78 Bahrain 27972 C 150 150
79 Bahrain 27973 A 150 150
80 Bahrain 27974 A 150 150
81 Bahrain 27975 C 150 150
82 Bahrain 27976 A 150 150
83 Bahrain 27977 T 150 150
84 Bahrain 27978 C 150 150
85 Bahrain 27979 A 150 150
86 Bahrain 27980 A 150 150
87 Bahrain 27981 C 150 150
88 Bahrain 27982 C 150 150
89 Bahrain 27983 A 150 150
90 Bahrain 27984 T 150 150
91 Bahrain 27985 A 150 150
92 Bahrain 27986 T 150 150
93 Bahrain 27987 G T 150 146 Val32Leu
94 Bahrain 27988 T 150 150
95 Bahrain 27989 A 150 150
96 Bahrain 27990 G 150 150
97 Bahrain 27991 T 150 150
98 Bahrain 27992 T 150 150
99 Bahrain 27993 G 150 150
100 Bahrain 27994 A 150 150
101 Bahrain 27995 T 150 150
102 Bahrain 27996 G 150 150
103 Bahrain 27997 A 150 150
104 Bahrain 27998 C 150 150
105 Bahrain 27999 C 150 150
106 Bahrain 28000 C 150 150
107 Bahrain 28001 G T 150 149 Pro36Pro
108 Bahrain 28002 T 150 150
109 Bahrain 28003 G 150 150
110 Bahrain 28004 T 150 150
111 Bahrain 28005 C 150 150
112 Bahrain 28006 C 150 150
113 Bahrain 28007 T 150 150
114 Bahrain 28008 A 150 150
115 Bahrain 28009 T 150 150
116 Bahrain 28010 T 150 150
117 Bahrain 28011 C 150 150
118 Bahrain 28012 A 150 150
119 Bahrain 28013 C 150 150
120 Bahrain 28014 T 150 150
121 Bahrain 28015 T 150 150
122 Bahrain 28016 C 150 150
123 Bahrain 28017 T 150 150
124 Bahrain 28018 A 150 150
125 Bahrain 28019 T 150 150
126 Bahrain 28020 T 150 150
127 Bahrain 28021 C 150 150
128 Bahrain 28022 T 150 150
129 Bahrain 28023 A 150 150
130 Bahrain 28024 A 150 150
131 Bahrain 28025 A 150 150
132 Bahrain 28026 T 150 150
133 Bahrain 28027 G T 150 149 Trp45Leu
134 Bahrain 28028 G 150 150
135 Bahrain 28029 T 150 150
136 Bahrain 28030 A 150 150
137 Bahrain 28031 T 150 150
138 Bahrain 28032 A 150 150
139 Bahrain 28033 T 150 150
140 Bahrain 28034 T 150 150
141 Bahrain 28035 A 150 150
142 Bahrain 28036 G 150 150
143 Bahrain 28037 A 150 150
144 Bahrain 28038 G 150 150
145 Bahrain 28039 T 150 150
146 Bahrain 28040 A 150 150
147 Bahrain 28041 G 150 150
148 Bahrain 28042 G 150 150
149 Bahrain 28043 A 150 150
150 Bahrain 28044 G 150 150
151 Bahrain 28045 C 150 150
152 Bahrain 28046 T 150 150
153 Bahrain 28047 A 150 150
154 Bahrain 28048 G 150 150
155 Bahrain 28049 A 150 150
156 Bahrain 28050 A 150 150
157 Bahrain 28051 A 150 150
158 Bahrain 28052 A 150 150
159 Bahrain 28053 T 150 150
160 Bahrain 28054 C 150 150
161 Bahrain 28055 A 150 150
162 Bahrain 28056 G 150 150
163 Bahrain 28057 C 150 150
164 Bahrain 28058 A 150 150
165 Bahrain 28059 C 150 150
166 Bahrain 28060 C 150 150
167 Bahrain 28061 T 150 150
168 Bahrain 28062 T 150 150
169 Bahrain 28063 T 150 150
170 Bahrain 28064 A T 150 149 Leu57Phe
171 Bahrain 28065 A 150 150
172 Bahrain 28066 T 150 150
173 Bahrain 28067 T 150 150
174 Bahrain 28068 G 150 150
175 Bahrain 28069 A 150 150
176 Bahrain 28070 A 150 150
177 Bahrain 28071 T 150 150
178 Bahrain 28072 T 150 150
179 Bahrain 28073 G 150 150
180 Bahrain 28074 T 150 150
181 Bahrain 28075 G 150 150
182 Bahrain 28076 C 150 150
183 Bahrain 28077 G 150 150
184 Bahrain 28078 T 150 150
185 Bahrain 28079 G 150 150
186 Bahrain 28080 G 150 150
187 Bahrain 28081 A 150 150
188 Bahrain 28082 T 150 150
189 Bahrain 28083 G 150 150
190 Bahrain 28084 A 150 150
191 Bahrain 28085 G 150 150
192 Bahrain 28086 G 150 150
193 Bahrain 28087 C 150 150
194 Bahrain 28088 T 150 150
195 Bahrain 28089 G 150 150
196 Bahrain 28090 G 150 150
197 Bahrain 28091 T 150 150
198 Bahrain 28092 T 150 150
199 Bahrain 28093 C T 150 149 Ser67Phe
200 Bahrain 28094 T 150 150
201 Bahrain 28095 A 150 150
202 Bahrain 28096 A 150 150
203 Bahrain 28097 A 150 150
204 Bahrain 28098 T 150 150
205 Bahrain 28099 C 150 150
206 Bahrain 28100 A 150 150
207 Bahrain 28101 C 150 150
208 Bahrain 28102 C 150 150
209 Bahrain 28103 C 150 150
210 Bahrain 28104 A 150 150
211 Bahrain 28105 T 150 150
212 Bahrain 28106 T 150 150
213 Bahrain 28107 C 150 150
214 Bahrain 28108 A 150 150
215 Bahrain 28109 G 150 150
216 Bahrain 28110 T 150 150
217 Bahrain 28111 A 150 150
218 Bahrain 28112 C 150 150
219 Bahrain 28113 A 150 150
220 Bahrain 28114 T 150 150
221 Bahrain 28115 C 150 150
222 Bahrain 28116 G 150 150
223 Bahrain 28117 A 150 150
224 Bahrain 28118 T 150 150
225 Bahrain 28119 A 150 150
226 Bahrain 28120 T C 150 149 Ile76Thr
227 Bahrain 28121 C 150 150
228 Bahrain 28122 G 150 150
229 Bahrain 28123 G 150 150
230 Bahrain 28124 T 150 150
231 Bahrain 28125 A 150 150
232 Bahrain 28126 A 150 150
233 Bahrain 28127 T 150 150
234 Bahrain 28128 T 150 150
235 Bahrain 28129 A 150 150
236 Bahrain 28130 T 150 150
237 Bahrain 28131 A 150 150
238 Bahrain 28132 C 150 150
239 Bahrain 28133 A 150 150
240 Bahrain 28134 G 150 150
241 Bahrain 28135 T 150 150
242 Bahrain 28136 T 150 150
243 Bahrain 28137 T 150 150
244 Bahrain 28138 C 150 150
245 Bahrain 28139 C 150 150
246 Bahrain 28140 T 150 150
247 Bahrain 28141 G T 150 148 Cys83Phe
248 Bahrain 28142 T 150 150
249 Bahrain 28143 T 150 150
250 Bahrain 28144 T C 150 148 Leu84Ser
251 Bahrain 28145 A 150 150
252 Bahrain 28146 C 150 150
253 Bahrain 28147 C 150 150
254 Bahrain 28148 T 150 150
255 Bahrain 28149 T 150 150
256 Bahrain 28150 T 150 150
257 Bahrain 28151 T 150 150
258 Bahrain 28152 A 150 150
259 Bahrain 28153 C 150 150
260 Bahrain 28154 A 150 150
261 Bahrain 28155 A 150 150
262 Bahrain 28156 T 150 150
263 Bahrain 28157 T 150 150
264 Bahrain 28158 A 150 150
265 Bahrain 28159 A 150 150
266 Bahrain 28160 T 150 150
267 Bahrain 28161 T 150 150
268 Bahrain 28162 G 150 150
269 Bahrain 28163 C 150 150
270 Bahrain 28164 C 150 150
271 Bahrain 28165 A 150 150
272 Bahrain 28166 G 150 150
273 Bahrain 28167 G A 150 149 Glu92Lys
274 Bahrain 28168 A 150 150
275 Bahrain 28169 A 150 150
276 Bahrain 28170 C 150 150
277 Bahrain 28171 C 150 150
278 Bahrain 28172 T 150 150
279 Bahrain 28173 A 150 150
280 Bahrain 28174 A 150 150
281 Bahrain 28175 A 150 150
282 Bahrain 28176 T 150 150
283 Bahrain 28177 T 150 150
284 Bahrain 28178 G 150 150
285 Bahrain 28179 G 150 150
286 Bahrain 28180 G 150 150
287 Bahrain 28181 T 150 150
288 Bahrain 28182 A 150 150
289 Bahrain 28183 G 150 150
290 Bahrain 28184 T 150 150
291 Bahrain 28185 C 150 150
292 Bahrain 28186 T 150 150
293 Bahrain 28187 T 150 150
294 Bahrain 28188 G 150 150
295 Bahrain 28189 T 150 150
296 Bahrain 28190 A 150 150
297 Bahrain 28191 G 150 150
298 Bahrain 28192 T 150 150
299 Bahrain 28193 G 150 150
300 Bahrain 28194 C 150 150
301 Bahrain 28195 G 150 150
302 Bahrain 28196 T 150 150
303 Bahrain 28197 T 150 150
304 Bahrain 28198 G 150 150
305 Bahrain 28199 T 150 150
306 Bahrain 28200 T 150 150
307 Bahrain 28201 C 150 150
308 Bahrain 28202 G 150 150
309 Bahrain 28203 T 150 150
310 Bahrain 28204 T 150 150
311 Bahrain 28205 C 150 150
312 Bahrain 28206 T 150 150
313 Bahrain 28207 A 150 150
314 Bahrain 28208 T 150 150
315 Bahrain 28209 G 150 150
316 Bahrain 28210 A 150 150
317 Bahrain 28211 A 150 150
318 Bahrain 28212 G 150 150
319 Bahrain 28213 A 150 150
320 Bahrain 28214 C 150 150
321 Bahrain 28215 T 150 150
322 Bahrain 28216 T 150 150
323 Bahrain 28217 T 150 150
324 Bahrain 28218 T 150 150
325 Bahrain 28219 T 150 150
326 Bahrain 28220 A 150 150
327 Bahrain 28221 G 150 150
328 Bahrain 28222 A 150 150
329 Bahrain 28223 G 150 150
330 Bahrain 28224 T 150 150
331 Bahrain 28225 A 150 150
332 Bahrain 28226 T 150 150
333 Bahrain 28227 C 150 150
334 Bahrain 28228 A 150 150
335 Bahrain 28229 T 150 150
336 Bahrain 28230 G 150 150
337 Bahrain 28231 A 150 150
338 Bahrain 28232 C 150 150
339 Bahrain 28233 G 150 150
340 Bahrain 28234 T 150 150
341 Bahrain 28235 T 150 150
342 Bahrain 28236 C 150 150
343 Bahrain 28237 G 150 150
344 Bahrain 28238 T 150 138
345 Bahrain 28239 G 150 138
346 Bahrain 28240 T 150 140
347 Bahrain 28241 T 150 150
348 Bahrain 28242 G 150 135
349 Bahrain 28243 T 150 150
350 Bahrain 28244 T 150 150
351 Bahrain 28245 T 150 137
352 Bahrain 28246 T 150 150
353 Bahrain 28247 A 150 150
354 Bahrain 28248 G 150 150
355 Bahrain 28249 A 150 150
356 Bahrain 28250 T 150 150
357 Bahrain 28251 T 150 150
358 Bahrain 28252 T 150 150
359 Bahrain 28253 C T 150 148 Phe120Phe
360 Bahrain 28254 A 150 150
361 Bahrain 28255 T 150 150
362 Bahrain 28256 C 150 150
363 Bahrain 28257 T 150 150
364 Bahrain 28258 A 150 150
365 Bahrain 28259 A 150 150