National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                   2    
C     21         1                              
D     22                                       2
E     18     1 1                                
F     24         2         2                    
G     15   1                         1          
H     12             1                         1
I     30         1     2                        
K 1   15                                        
L     30         1         1           2        
M     3                                        
N     6                                        
P     21                   2     1              
Q 1   18                                        
R     12             1 1   1                    
S     27         1         1                    
T     15               1                 1      
V     36         1         1               1    
W     3                                        
Y     21   1         1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 27894 A 1309 1309
1 Austria 27895 T 1309 1309
2 Austria 27896 G 1309 1309
3 Austria 27897 A 1309 1309
4 Austria 27898 A 1309 1309
5 Austria 27899 A 1309 1309
6 Austria 27900 T C 1310 1309 Phe3Leu
7 Austria 27901 T 1310 1310
8 Austria 27902 T 1310 1310
9 Austria 27903 C 1310 1310
10 Austria 27904 T 1310 1310
11 Austria 27905 T 1310 1310
12 Austria 27906 G 1310 1310
13 Austria 27907 T 1310 1310
14 Austria 27908 T 1310 1310
15 Austria 27909 T 1310 1310
16 Austria 27910 T 1310 1310
17 Austria 27911 C 1310 1310
18 Austria 27912 T 1310 1310
19 Austria 27913 T 1310 1310
20 Austria 27914 A 1310 1310
21 Austria 27915 G A 1310 1309 Gly8Arg
22 Austria 27916 G 1310 1310
23 Austria 27917 A 1310 1310
24 Austria 27918 A 1310 1310
25 Austria 27919 T 1310 1310
26 Austria 27920 C T 1310 1309 Ile9Ile
27 Austria 27921 A 1310 1310
28 Austria 27922 T 1310 1310
29 Austria 27923 C T 1310 1309 Ile10Ile
30 Austria 27924 A 1310 1310
31 Austria 27925 C 1310 1310
32 Austria 27926 A 1310 1310
33 Austria 27927 A 1310 1310
34 Austria 27928 C 1310 1310
35 Austria 27929 T 1310 1310
36 Austria 27930 G 1310 1310
37 Austria 27931 T 1310 1310
38 Austria 27932 A 1310 1310
39 Austria 27933 G 1310 1310
40 Austria 27934 C 1310 1310
41 Austria 27935 T 1310 1310
42 Austria 27936 G 1310 1310
43 Austria 27937 C 1310 1310
44 Austria 27938 A 1310 1310
45 Austria 27939 T 1310 1310
46 Austria 27940 T 1310 1310
47 Austria 27941 T 1310 1310
48 Austria 27942 C T 1310 1309 His17Tyr
49 Austria 27943 A 1310 1310
50 Austria 27944 C T 1310 1290 His17His
51 Austria 27945 C 1310 1310
52 Austria 27946 A 1310 1310
53 Austria 27947 A 1310 1310
54 Austria 27948 G 1310 1310
55 Austria 27949 A 1310 1310
56 Austria 27950 A 1310 1310
57 Austria 27951 T 1310 1310
58 Austria 27952 G 1310 1310
59 Austria 27953 T 1310 1310
60 Austria 27954 A 1310 1310
61 Austria 27955 G 1310 1310
62 Austria 27956 T 1310 1310
63 Austria 27957 T C 1310 1309 Leu22Leu
64 Austria 27958 T C 1310 1309 Leu22Ser
65 Austria 27959 A 1310 1310
66 Austria 27960 C 1310 1310
67 Austria 27961 A 1310 1310
68 Austria 27962 G 1310 1310
69 Austria 27963 T 1310 1310
70 Austria 27964 C 1310 1310
71 Austria 27965 A 1310 1310
72 Austria 27966 T 1310 1310
73 Austria 27967 G 1310 1310
74 Austria 27968 T 1310 1310
75 Austria 27969 A 1310 1310
76 Austria 27970 C T 1310 1308 Thr26Ile
77 Austria 27971 T 1310 1310
78 Austria 27972 C T 1310 1262 Gln27*
79 Austria 27973 A 1310 1310
80 Austria 27974 A 1310 1310
81 Austria 27975 C 1310 1310
82 Austria 27976 A 1310 1310
83 Austria 27977 T 1310 1310
84 Austria 27978 C 1310 1310
85 Austria 27979 A 1310 1310
86 Austria 27980 A 1310 1310
87 Austria 27981 C 1310 1310
88 Austria 27982 C T 1310 1309 Pro30Leu
89 Austria 27983 A 1310 1310
90 Austria 27984 T 1310 1310
91 Austria 27985 A 1310 1310
92 Austria 27986 T 1310 1310
93 Austria 27987 G 1310 1310
94 Austria 27988 T 1310 1310
95 Austria 27989 A 1311 1311
96 Austria 27990 G 1311 1311
97 Austria 27991 T 1311 1311
98 Austria 27992 T 1311 1311
99 Austria 27993 G 1311 1310
100 Austria 27994 A 1311 1311
101 Austria 27995 T 1311 1311
102 Austria 27996 G T 1311 1310 Asp35Tyr
103 Austria 27997 A 1311 1311
104 Austria 27998 C 1311 1311
105 Austria 27999 C 1311 1311
106 Austria 28000 C T 1311 1309 Pro36Leu
107 Austria 28001 G T 1311 1302 Pro36Pro
108 Austria 28002 T 1311 1311
109 Austria 28003 G 1311 1311
110 Austria 28004 T 1311 1311
111 Austria 28005 C 1311 1311
112 Austria 28006 C 1311 1311
113 Austria 28007 T 1311 1311
114 Austria 28008 A 1311 1311
115 Austria 28009 T 1311 1311
116 Austria 28010 T 1311 1311
117 Austria 28011 C 1311 1311
118 Austria 28012 A 1311 1311
119 Austria 28013 C 1311 1311
120 Austria 28014 T 1311 1311
121 Austria 28015 T 1311 1311
122 Austria 28016 C 1311 1311
123 Austria 28017 T 1311 1311
124 Austria 28018 A 1311 1311
125 Austria 28019 T 1311 1311
126 Austria 28020 T 1311 1311
127 Austria 28021 C 1311 1311
128 Austria 28022 T 1311 1311
129 Austria 28023 A 1311 1311
130 Austria 28024 A 1311 1311
131 Austria 28025 A 1311 1311
132 Austria 28026 T 1311 1311
133 Austria 28027 G 1311 1311
134 Austria 28028 G 1311 1309
135 Austria 28029 T 1311 1311
136 Austria 28030 A 1311 1311
137 Austria 28031 T 1311 1311
138 Austria 28032 A 1311 1311
139 Austria 28033 T 1311 1311
140 Austria 28034 T 1311 1311
141 Austria 28035 A 1311 1311
142 Austria 28036 G 1311 1311
143 Austria 28037 A 1311 1311
144 Austria 28038 G 1311 1311
145 Austria 28039 T 1311 1311
146 Austria 28040 A 1311 1311
147 Austria 28041 G 1311 1311
148 Austria 28042 G 1311 1311
149 Austria 28043 A 1311 1311
150 Austria 28044 G 1311 1311
151 Austria 28045 C T 1311 1309 Ala51Val
152 Austria 28046 T 1311 1311
153 Austria 28047 A 1311 1311
154 Austria 28048 G T 1311 1263 Arg52Ile
155 Austria 28049 A 1311 1310
156 Austria 28050 A 1311 1311
157 Austria 28051 A 1311 1311
158 Austria 28052 A 1311 1311
159 Austria 28053 T 1311 1311
160 Austria 28054 C T 1311 1310 Ser54Leu
161 Austria 28055 A 1311 1311
162 Austria 28056 G 1311 1311
163 Austria 28057 C 1311 1310
164 Austria 28058 A 1311 1311
165 Austria 28059 C 1311 1311
166 Austria 28060 C 1311 1311
167 Austria 28061 T 1311 1311
168 Austria 28062 T 1311 1311
169 Austria 28063 T 1311 1311
170 Austria 28064 A C 1311 1309 Leu57Phe
171 Austria 28065 A T 1311 1309 Ile58Phe
172 Austria 28066 T 1311 1310
173 Austria 28067 T 1311 1310
174 Austria 28068 G 1311 1310
175 Austria 28069 A 1311 1310
176 Austria 28070 A 1311 1310
177 Austria 28071 T 1311 1310
178 Austria 28072 T 1311 1310
179 Austria 28073 G 1311 1310
180 Austria 28074 T 1311 1310
181 Austria 28075 G 1311 1310
182 Austria 28076 C 1311 1310
183 Austria 28077 G T 1311 1302 Val62Leu
184 Austria 28078 T 1311 1310
185 Austria 28079 G T 1311 1309 Val62Val
186 Austria 28080 G 1311 1310
187 Austria 28081 A 1311 1309
188 Austria 28082 T 1311 1310
189 Austria 28083 G 1311 1310
190 Austria 28084 A 1311 1310
191 Austria 28085 G T 1311 1309 Glu64Asp
192 Austria 28086 G 1311 1310
193 Austria 28087 C T 1311 1306 Ala65Val
194 Austria 28088 T 1311 1310
195 Austria 28089 G 1311 1310
196 Austria 28090 G 1311 1310
197 Austria 28091 T 1311 1310
198 Austria 28092 T 1311 1310
199 Austria 28093 C T 1311 1308 Ser67Phe
200 Austria 28094 T 1311 1310
201 Austria 28095 A T 1311 1281 Lys68*
202 Austria 28096 A 1311 1310
203 Austria 28097 A 1311 1310
204 Austria 28098 T 1311 1310
205 Austria 28099 C 1311 1310
206 Austria 28100 A 1311 1310
207 Austria 28101 C 1311 1310
208 Austria 28102 C 1311 1310
209 Austria 28103 C 1311 1310
210 Austria 28104 A 1311 1310
211 Austria 28105 T 1344 1344
212 Austria 28106 T 1344 1344
213 Austria 28107 C 1344 1344
214 Austria 28108 A 1344 1344
215 Austria 28109 G 1344 1344
216 Austria 28110 T C 1344 1342 Tyr73His
217 Austria 28111 A G 1344 1298 Tyr73Cys
218 Austria 28112 C 1344 1344
219 Austria 28113 A 1344 1344
220 Austria 28114 T 1344 1344
221 Austria 28115 C 1344 1344
222 Austria 28116 G 1344 1344
223 Austria 28117 A 1344 1344
224 Austria 28118 T 1344 1344
225 Austria 28119 A 1344 1344
226 Austria 28120 T 1344 1344
227 Austria 28121 C 1344 1344
228 Austria 28122 G T 1344 1343 Gly77Cys
229 Austria 28123 G 1344 1344
230 Austria 28124 T 1344 1344
231 Austria 28125 A 1344 1344
232 Austria 28126 A 1344 1344
233 Austria 28127 T 1344 1344
234 Austria 28128 T 1344 1344
235 Austria 28129 A 1344 1344
236 Austria 28130 T 1344 1344
237 Austria 28131 A 1344 1344
238 Austria 28132 C 1344 1344
239 Austria 28133 A T 1344 1341 Thr80Thr
240 Austria 28134 G 1344 1344
241 Austria 28135 T 1344 1344
242 Austria 28136 T 1344 1344
243 Austria 28137 T 1344 1344
244 Austria 28138 C 1344 1344
245 Austria 28139 C 1344 1344
246 Austria 28140 T 1344 1344
247 Austria 28141 G 1344 1344
248 Austria 28142 T 1344 1344
249 Austria 28143 T 1344 1344
250 Austria 28144 T C 1344 1328 Leu84Ser
251 Austria 28145 A 1344 1344
252 Austria 28146 C 1344 1344
253 Austria 28147 C 1344 1344
254 Austria 28148 T 1344 1344
255 Austria 28149 T 1344 1344
256 Austria 28150 T 1344 1344
257 Austria 28151 T C 1344 1343 Phe86Phe
258 Austria 28152 A 1344 1344
259 Austria 28153 C 1344 1343
260 Austria 28154 A 1344 1344
261 Austria 28155 A 1344 1344
262 Austria 28156 T 1344 1344
263 Austria 28157 T 1344 1344
264 Austria 28158 A 1344 1344
265 Austria 28159 A 1344 1344
266 Austria 28160 T 1344 1344
267 Austria 28161 T 1344 1344
268 Austria 28162 G 1344 1344
269 Austria 28163 C 1344 1344
270 Austria 28164 C 1344 1344
271 Austria 28165 A 1344 1344
272 Austria 28166 G 1344 1344
273 Austria 28167 G 1344 1344
274 Austria 28168 A 1344 1344
275 Austria 28169 A G 1344 1340 Glu92Glu
276 Austria 28170 C 1344 1344
277 Austria 28171 C 1344 1344
278 Austria 28172 T 1344 1344
279 Austria 28173 A 1344 1344
280 Austria 28174 A 1344 1344
281 Austria 28175 A 1344 1344
282 Austria 28176 T 1344 1344
283 Austria 28177 T 1344 1344
284 Austria 28178 G 1344 1344
285 Austria 28179 G 1344 1344
286 Austria 28180 G 1344 1344
287 Austria 28181 T 1344 1344
288 Austria 28182 A 1344 1344
289 Austria 28183 G 1344 1344
290 Austria 28184 T 1344 1344
291 Austria 28185 C 1344 1344
292 Austria 28186 T 1344 1344
293 Austria 28187 T 1344 1344
294 Austria 28188 G 1344 1344
295 Austria 28189 T 1344 1344
296 Austria 28190 A 1344 1344
297 Austria 28191 G 1344 1344
298 Austria 28192 T 1344 1344
299 Austria 28193 G 1344 1344
300 Austria 28194 C 1344 1343
301 Austria 28195 G A 1344 1343 Arg101His
302 Austria 28196 T 1344 1344
303 Austria 28197 T 1344 1344
304 Austria 28198 G T 1344 1341 Cys102Phe
305 Austria 28199 T 1344 1343
306 Austria 28200 T 1344 1344
307 Austria 28201 C 1344 1344
308 Austria 28202 G 1344 1344
309 Austria 28203 T 1344 1344
310 Austria 28204 T 1344 1344
311 Austria 28205 C 1344 1344
312 Austria 28206 T 1344 1344
313 Austria 28207 A 1344 1344
314 Austria 28208 T C 1344 1343 Tyr105Tyr
315 Austria 28209 G 1344 1344
316 Austria 28210 A 1344 1344
317 Austria 28211 A 1344 1344
318 Austria 28212 G 1344 1344
319 Austria 28213 A 1344 1344
320 Austria 28214 C 1344 1344
321 Austria 28215 T 1344 1344
322 Austria 28216 T 1344 1344
323 Austria 28217 T 1344 1344
324 Austria 28218 T 1344 1344
325 Austria 28219 T 1344 1344
326 Austria 28220 A 1344 1344
327 Austria 28221 G 1344 1344
328 Austria 28222 A 1344 1344
329 Austria 28223 G 1344 1344
330 Austria 28224 T 1344 1344
331 Austria 28225 A 1344 1344
332 Austria 28226 T 1344 1344
333 Austria 28227 C 1344 1344
334 Austria 28228 A 1344 1344
335 Austria 28229 T 1344 1344
336 Austria 28230 G T 1344 1343 Asp113Tyr
337 Austria 28231 A 1344 1344
338 Austria 28232 C 1344 1344
339 Austria 28233 G 1344 1344
340 Austria 28234 T 1344 1344
341 Austria 28235 T 1344 1344
342 Austria 28236 C 1344 1344
343 Austria 28237 G T 1344 1342 Arg115Leu
344 Austria 28238 T 1344 1344
345 Austria 28239 G T 1344 1343 Val116Phe
346 Austria 28240 T 1344 1344
347 Austria 28241 T 1344 1344
348 Austria 28242 G 1344 1344
349 Austria 28243 T 1344 1344
350 Austria 28244 T 1344 1344
351 Austria 28245 T 1344 1344
352 Austria 28246 T 1344 1344
353 Austria 28247 A 1344 1344
354 Austria 28248 G 1344 1344
355 Austria 28249 A 1344 1344
356 Austria 28250 T 1344 1344
357 Austria 28251 T 1342 1342
358 Austria 28252 T 1342 1342
359 Austria 28253 C T,G 1342 1321 Phe120Leu-p.Phe120Phe
360 Austria 28254 A 1342 1342
361 Austria 28255 T 1342 1342
362 Austria 28256 C 1342 1342
363 Austria 28257 T 1342 1342
364 Austria 28258 A 1342 1342
365 Austria 28259 A 1342 1342