National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15           1                   1        
C     21         2                              
D     22                                       1
E     18                                        
F     24                   1                    
G 1   15   1                               1    
H     12                           1            
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                   1           2        
Q     18                                        
R     12                   1                    
S     27         1         1                    
T     15               1                        
V     36         2     1   2                    
W     3                                        
Y     21             1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Australia 27894 A 1171 1171
1 Australia 27895 T 1171 1171
2 Australia 27896 G 1171 1171
3 Australia 27897 A 1171 1171
4 Australia 27898 A 1171 1171
5 Australia 27899 A 1171 1171
6 Australia 27900 T 1171 1171
7 Australia 27901 T 1171 1171
8 Australia 27902 T 1171 1171
9 Australia 27903 C 1171 1171
10 Australia 27904 T 1171 1171
11 Australia 27905 T 1171 1171
12 Australia 27906 G T 1171 1169 Val5Phe
13 Australia 27907 T 1171 1171
14 Australia 27908 T 1171 1171
15 Australia 27909 T 1171 1171
16 Australia 27910 T 1171 1171
17 Australia 27911 C 1171 1171
18 Australia 27912 T 1171 1171
19 Australia 27913 T 1171 1171
20 Australia 27914 A 1171 1171
21 Australia 27915 G T 1171 1169 Gly8*
22 Australia 27916 G T 1171 1170 Gly8Val
23 Australia 27917 A 1171 1171
24 Australia 27918 A 1171 1171
25 Australia 27919 T 1171 1171
26 Australia 27920 C 1171 1171
27 Australia 27921 A 1171 1171
28 Australia 27922 T 1171 1171
29 Australia 27923 C 1171 1171
30 Australia 27924 A 1171 1171
31 Australia 27925 C T 1171 1169 Thr11Ile
32 Australia 27926 A 1171 1171
33 Australia 27927 A 1171 1171
34 Australia 27928 C 1171 1171
35 Australia 27929 T 1171 1171
36 Australia 27930 G 1171 1171
37 Australia 27931 T 1171 1171
38 Australia 27932 A 1171 1171
39 Australia 27933 G 1171 1171
40 Australia 27934 C 1171 1171
41 Australia 27935 T 1171 1171
42 Australia 27936 G 1171 1171
43 Australia 27937 C 1171 1171
44 Australia 27938 A 1171 1171
45 Australia 27939 T 1171 1171
46 Australia 27940 T 1171 1171
47 Australia 27941 T 1171 1171
48 Australia 27942 C 1171 1171
49 Australia 27943 A 1171 1171
50 Australia 27944 C 1171 1171
51 Australia 27945 C 1171 1171
52 Australia 27946 A 1171 1171
53 Australia 27947 A 1171 1171
54 Australia 27948 G 1171 1171
55 Australia 27949 A 1171 1171
56 Australia 27950 A 1171 1171
57 Australia 27951 T 1171 1171
58 Australia 27952 G 1171 1171
59 Australia 27953 T 1171 1171
60 Australia 27954 A 1171 1171
61 Australia 27955 G 1171 1171
62 Australia 27956 T 1171 1171
63 Australia 27957 T 1171 1171
64 Australia 27958 T 1171 1171
65 Australia 27959 A 1171 1171
66 Australia 27960 C 1171 1171
67 Australia 27961 A 1171 1171
68 Australia 27962 G 1171 1171
69 Australia 27963 T 1171 1171
70 Australia 27964 C T 1171 1139 Ser24Leu
71 Australia 27965 A 1171 1171
72 Australia 27966 T 1171 1171
73 Australia 27967 G 1171 1171
74 Australia 27968 T 1171 1171
75 Australia 27969 A 1171 1171
76 Australia 27970 C 1171 1171
77 Australia 27971 T 1171 1171
78 Australia 27972 C 1171 1171
79 Australia 27973 A 1171 1171
80 Australia 27974 A 1171 1171
81 Australia 27975 C 1171 1171
82 Australia 27976 A 1171 1171
83 Australia 27977 T G 1171 1170 His28Gln
84 Australia 27978 C 1171 1171
85 Australia 27979 A 1171 1171
86 Australia 27980 A 1171 1171
87 Australia 27981 C 1171 1171
88 Australia 27982 C 1171 1171
89 Australia 27983 A 1171 1171
90 Australia 27984 T C 1173 1172 Tyr31His
91 Australia 27985 A 1173 1173
92 Australia 27986 T 1173 1173
93 Australia 27987 G 1173 1173
94 Australia 27988 T 1173 1173
95 Australia 27989 A 1173 1173
96 Australia 27990 G 1173 1173
97 Australia 27991 T 1173 1173
98 Australia 27992 T 1173 1173
99 Australia 27993 G 1173 1173
100 Australia 27994 A 1173 1173
101 Australia 27995 T 1173 1173
102 Australia 27996 G T 1173 1172 Asp35Tyr
103 Australia 27997 A 1173 1173
104 Australia 27998 C 1173 1172
105 Australia 27999 C T 1173 1172 Pro36Ser
106 Australia 28000 C T 1173 1172 Pro36Leu
107 Australia 28001 G 1173 1173
108 Australia 28002 T 1173 1173
109 Australia 28003 G T 1173 1171 Cys37Phe
110 Australia 28004 T 1173 1173
111 Australia 28005 C T 1173 1172 Pro38Ser
112 Australia 28006 C 1173 1173
113 Australia 28007 T 1173 1173
114 Australia 28008 A 1173 1173
115 Australia 28009 T 1173 1173
116 Australia 28010 T 1173 1173
117 Australia 28011 C 1173 1173
118 Australia 28012 A 1173 1173
119 Australia 28013 C 1173 1173
120 Australia 28014 T 1173 1173
121 Australia 28015 T 1173 1173
122 Australia 28016 C 1173 1173
123 Australia 28017 T 1173 1173
124 Australia 28018 A 1173 1173
125 Australia 28019 T 1173 1173
126 Australia 28020 T 1173 1173
127 Australia 28021 C 1173 1173
128 Australia 28022 T 1173 1173
129 Australia 28023 A 1173 1173
130 Australia 28024 A 1173 1173
131 Australia 28025 A 1173 1173
132 Australia 28026 T 1173 1173
133 Australia 28027 G 1173 1173
134 Australia 28028 G 1173 1173
135 Australia 28029 T 1173 1173
136 Australia 28030 A 1173 1173
137 Australia 28031 T 1173 1173
138 Australia 28032 A 1173 1173
139 Australia 28033 T 1173 1173
140 Australia 28034 T 1173 1173
141 Australia 28035 A 1173 1173
142 Australia 28036 G 1173 1173
143 Australia 28037 A 1173 1173
144 Australia 28038 G 1173 1173
145 Australia 28039 T 1173 1173
146 Australia 28040 A 1173 1173
147 Australia 28041 G 1173 1173
148 Australia 28042 G 1173 1173
149 Australia 28043 A 1173 1173
150 Australia 28044 G 1173 1173
151 Australia 28045 C 1173 1173
152 Australia 28046 T 1173 1173
153 Australia 28047 A 1173 1173
154 Australia 28048 G 1173 1173
155 Australia 28049 A 1173 1173
156 Australia 28050 A 1173 1173
157 Australia 28051 A 1173 1173
158 Australia 28052 A 1173 1173
159 Australia 28053 T 1173 1173
160 Australia 28054 C 1173 1173
161 Australia 28055 A 1173 1173
162 Australia 28056 G 1173 1173
163 Australia 28057 C 1173 1173
164 Australia 28058 A 1173 1173
165 Australia 28059 C 1173 1173
166 Australia 28060 C 1173 1173
167 Australia 28061 T 1173 1173
168 Australia 28062 T 1173 1173
169 Australia 28063 T 1173 1173
170 Australia 28064 A 1173 1173
171 Australia 28065 A 1173 1173
172 Australia 28066 T 1173 1173
173 Australia 28067 T 1173 1173
174 Australia 28068 G 1173 1173
175 Australia 28069 A 1173 1173
176 Australia 28070 A 1173 1173
177 Australia 28071 T 1173 1173
178 Australia 28072 T 1173 1173
179 Australia 28073 G 1173 1173
180 Australia 28074 T 1172 1172
181 Australia 28075 G 1172 1172
182 Australia 28076 C 1172 1172
183 Australia 28077 G C,T 1172 1131 Val62Leu-p.Val62Leu
184 Australia 28078 T 1172 1172
185 Australia 28079 G 1172 1169
186 Australia 28080 G 1172 1172
187 Australia 28081 A 1172 1172
188 Australia 28082 T 1172 1171
189 Australia 28083 G 1172 1171
190 Australia 28084 A 1172 1171
191 Australia 28085 G 1172 1171
192 Australia 28086 G T 1172 1167 Ala65Ser
193 Australia 28087 C G 1172 1171 Ala65Gly
194 Australia 28088 T 1172 1172
195 Australia 28089 G T 1172 1171 Gly66Cys
196 Australia 28090 G 1172 1172
197 Australia 28091 T 1172 1172
198 Australia 28092 T 1172 1172
199 Australia 28093 C T 1172 1171 Ser67Phe
200 Australia 28094 T 1172 1172
201 Australia 28095 A 1172 1172
202 Australia 28096 A 1172 1172
203 Australia 28097 A 1172 1172
204 Australia 28098 T 1172 1172
205 Australia 28099 C 1172 1172
206 Australia 28100 A 1172 1172
207 Australia 28101 C 1172 1172
208 Australia 28102 C 1172 1172
209 Australia 28103 C 1172 1172
210 Australia 28104 A 1172 1172
211 Australia 28105 T 1172 1172
212 Australia 28106 T 1172 1172
213 Australia 28107 C 1172 1172
214 Australia 28108 A 1172 1172
215 Australia 28109 G 1172 1172
216 Australia 28110 T 1172 1172
217 Australia 28111 A 1172 1172
218 Australia 28112 C 1172 1172
219 Australia 28113 A 1172 1172
220 Australia 28114 T 1172 1172
221 Australia 28115 C 1172 1172
222 Australia 28116 G 1172 1172
223 Australia 28117 A 1172 1172
224 Australia 28118 T 1172 1172
225 Australia 28119 A 1172 1172
226 Australia 28120 T 1172 1172
227 Australia 28121 C 1172 1172
228 Australia 28122 G 1172 1172
229 Australia 28123 G 1172 1172
230 Australia 28124 T 1172 1172
231 Australia 28125 A 1172 1172
232 Australia 28126 A 1172 1172
233 Australia 28127 T 1172 1172
234 Australia 28128 T 1172 1172
235 Australia 28129 A 1172 1172
236 Australia 28130 T 1172 1172
237 Australia 28131 A 1172 1172
238 Australia 28132 C 1172 1172
239 Australia 28133 A 1172 1172
240 Australia 28134 G 1173 1173
241 Australia 28135 T 1173 1173
242 Australia 28136 T 1173 1173
243 Australia 28137 T 1173 1173
244 Australia 28138 C 1173 1173
245 Australia 28139 C 1173 1173
246 Australia 28140 T 1173 1173
247 Australia 28141 G 1173 1173
248 Australia 28142 T 1173 1173
249 Australia 28143 T 1173 1173
250 Australia 28144 T C 1173 955 Leu84Ser
251 Australia 28145 A 1173 1173
252 Australia 28146 C 1173 1173
253 Australia 28147 C 1173 1173
254 Australia 28148 T 1173 1173
255 Australia 28149 T 1173 1173
256 Australia 28150 T 1173 1173
257 Australia 28151 T 1173 1173
258 Australia 28152 A 1173 1173
259 Australia 28153 C 1173 1173
260 Australia 28154 A 1173 1173
261 Australia 28155 A 1173 1173
262 Australia 28156 T 1173 1173
263 Australia 28157 T 1173 1173
264 Australia 28158 A 1173 1173
265 Australia 28159 A 1173 1173
266 Australia 28160 T 1173 1173
267 Australia 28161 T 1173 1173
268 Australia 28162 G 1173 1173
269 Australia 28163 C 1173 1173
270 Australia 28164 C 1173 1173
271 Australia 28165 A 1173 1173
272 Australia 28166 G 1173 1172
273 Australia 28167 G 1173 1173
274 Australia 28168 A 1173 1173
275 Australia 28169 A 1173 1173
276 Australia 28170 C 1173 1173
277 Australia 28171 C 1173 1173
278 Australia 28172 T 1173 1173
279 Australia 28173 A 1173 1173
280 Australia 28174 A 1173 1173
281 Australia 28175 A 1173 1172
282 Australia 28176 T 1173 1172
283 Australia 28177 T 1173 1172
284 Australia 28178 G 1173 1172
285 Australia 28179 G 1173 1172
286 Australia 28180 G 1173 1172
287 Australia 28181 T 1173 1172
288 Australia 28182 A 1173 1172
289 Australia 28183 G 1173 1173
290 Australia 28184 T 1173 1173
291 Australia 28185 C 1173 1173
292 Australia 28186 T 1173 1173
293 Australia 28187 T 1173 1173
294 Australia 28188 G 1173 1173
295 Australia 28189 T 1173 1173
296 Australia 28190 A 1173 1173
297 Australia 28191 G 1173 1173
298 Australia 28192 T 1173 1173
299 Australia 28193 G 1173 1173
300 Australia 28194 C 1173 1173
301 Australia 28195 G 1173 1173
302 Australia 28196 T 1173 1173
303 Australia 28197 T 1173 1173
304 Australia 28198 G T 1173 1171 Cys102Phe
305 Australia 28199 T 1173 1173
306 Australia 28200 T 1173 1173
307 Australia 28201 C 1173 1173
308 Australia 28202 G 1173 1173
309 Australia 28203 T 1173 1173
310 Australia 28204 T 1173 1173
311 Australia 28205 C 1173 1173
312 Australia 28206 T 1173 1173
313 Australia 28207 A 1173 1173
314 Australia 28208 T 1173 1173
315 Australia 28209 G 1173 1173
316 Australia 28210 A 1173 1173
317 Australia 28211 A 1173 1173
318 Australia 28212 G 1173 1173
319 Australia 28213 A 1173 1173
320 Australia 28214 C 1173 1172
321 Australia 28215 T 1173 1172
322 Australia 28216 T 1173 1172
323 Australia 28217 T 1173 1172
324 Australia 28218 T 1173 1172
325 Australia 28219 T 1173 1172
326 Australia 28220 A 1173 1173
327 Australia 28221 G 1173 1173
328 Australia 28222 A 1173 1173
329 Australia 28223 G 1173 1173
330 Australia 28224 T 1173 1173
331 Australia 28225 A 1173 1173
332 Australia 28226 T 1173 1173
333 Australia 28227 C 1173 1173
334 Australia 28228 A 1173 1173
335 Australia 28229 T 1173 1173
336 Australia 28230 G 1173 1173
337 Australia 28231 A 1173 1173
338 Australia 28232 C 1173 1172
339 Australia 28233 G T,A 1173 1170 Val114Phe-p.Val114Ile
340 Australia 28234 T 1173 1172
341 Australia 28235 T 1173 1173
342 Australia 28236 C 1173 1173
343 Australia 28237 G T 1173 1172 Arg115Leu
344 Australia 28238 T 1173 1173
345 Australia 28239 G 1173 1173
346 Australia 28240 T 1173 1173
347 Australia 28241 T 1173 1173
348 Australia 28242 G 1173 1173
349 Australia 28243 T 1173 1173
350 Australia 28244 T 1173 1173
351 Australia 28245 T 1173 1173
352 Australia 28246 T 1173 1173
353 Australia 28247 A 1173 1173
354 Australia 28248 G 1173 1173
355 Australia 28249 A 1173 1173
356 Australia 28250 T 1173 1173
357 Australia 28251 T 1173 1173
358 Australia 28252 T 1173 1173
359 Australia 28253 C G 1173 1169 Phe120Leu
360 Australia 28254 A 1173 1172
361 Australia 28255 T 1173 1173
362 Australia 28256 C 1173 1173
363 Australia 28257 T 1173 1173
364 Australia 28258 A 1173 1173
365 Australia 28259 A 1172 1172