National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24         1                              
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 27894 A 11 11
1 Aruba 27895 T 11 11
2 Aruba 27896 G 11 11
3 Aruba 27897 A 11 11
4 Aruba 27898 A 11 11
5 Aruba 27899 A 11 11
6 Aruba 27900 T 11 11
7 Aruba 27901 T 11 11
8 Aruba 27902 T 11 11
9 Aruba 27903 C 11 11
10 Aruba 27904 T 11 11
11 Aruba 27905 T 11 11
12 Aruba 27906 G 11 11
13 Aruba 27907 T 11 11
14 Aruba 27908 T 11 11
15 Aruba 27909 T 11 11
16 Aruba 27910 T 11 11
17 Aruba 27911 C 11 11
18 Aruba 27912 T 11 11
19 Aruba 27913 T 11 11
20 Aruba 27914 A 11 11
21 Aruba 27915 G 11 11
22 Aruba 27916 G 11 11
23 Aruba 27917 A 11 11
24 Aruba 27918 A 11 11
25 Aruba 27919 T 11 11
26 Aruba 27920 C 11 11
27 Aruba 27921 A 11 11
28 Aruba 27922 T 11 11
29 Aruba 27923 C 11 11
30 Aruba 27924 A 11 11
31 Aruba 27925 C 11 11
32 Aruba 27926 A 11 11
33 Aruba 27927 A 11 11
34 Aruba 27928 C 11 11
35 Aruba 27929 T 11 11
36 Aruba 27930 G 11 11
37 Aruba 27931 T 11 11
38 Aruba 27932 A 11 11
39 Aruba 27933 G 11 11
40 Aruba 27934 C 11 11
41 Aruba 27935 T 11 11
42 Aruba 27936 G 11 11
43 Aruba 27937 C 11 11
44 Aruba 27938 A 11 11
45 Aruba 27939 T 11 11
46 Aruba 27940 T 11 11
47 Aruba 27941 T 11 11
48 Aruba 27942 C 11 11
49 Aruba 27943 A 11 11
50 Aruba 27944 C 11 11
51 Aruba 27945 C 11 11
52 Aruba 27946 A 11 11
53 Aruba 27947 A 11 11
54 Aruba 27948 G 11 11
55 Aruba 27949 A 11 11
56 Aruba 27950 A 11 11
57 Aruba 27951 T 11 11
58 Aruba 27952 G 11 11
59 Aruba 27953 T 11 11
60 Aruba 27954 A 11 11
61 Aruba 27955 G 11 11
62 Aruba 27956 T 11 11
63 Aruba 27957 T 11 11
64 Aruba 27958 T 11 11
65 Aruba 27959 A 11 11
66 Aruba 27960 C 11 11
67 Aruba 27961 A 11 11
68 Aruba 27962 G 11 11
69 Aruba 27963 T 11 11
70 Aruba 27964 C 11 11
71 Aruba 27965 A 11 11
72 Aruba 27966 T 11 11
73 Aruba 27967 G 11 11
74 Aruba 27968 T 11 11
75 Aruba 27969 A 11 11
76 Aruba 27970 C 11 11
77 Aruba 27971 T 11 11
78 Aruba 27972 C 11 11
79 Aruba 27973 A 11 11
80 Aruba 27974 A 11 11
81 Aruba 27975 C 11 11
82 Aruba 27976 A 11 11
83 Aruba 27977 T 11 11
84 Aruba 27978 C 11 11
85 Aruba 27979 A 11 11
86 Aruba 27980 A 11 11
87 Aruba 27981 C 11 11
88 Aruba 27982 C 11 11
89 Aruba 27983 A 11 11
90 Aruba 27984 T 11 11
91 Aruba 27985 A 11 11
92 Aruba 27986 T 11 11
93 Aruba 27987 G 11 11
94 Aruba 27988 T 11 11
95 Aruba 27989 A 11 11
96 Aruba 27990 G 11 11
97 Aruba 27991 T 11 11
98 Aruba 27992 T 11 11
99 Aruba 27993 G 11 11
100 Aruba 27994 A 11 11
101 Aruba 27995 T 11 11
102 Aruba 27996 G 11 11
103 Aruba 27997 A 11 11
104 Aruba 27998 C 11 11
105 Aruba 27999 C 11 11
106 Aruba 28000 C 11 11
107 Aruba 28001 G 11 11
108 Aruba 28002 T 11 11
109 Aruba 28003 G 11 11
110 Aruba 28004 T 11 11
111 Aruba 28005 C 11 11
112 Aruba 28006 C 11 11
113 Aruba 28007 T 11 11
114 Aruba 28008 A 11 11
115 Aruba 28009 T 11 11
116 Aruba 28010 T 11 11
117 Aruba 28011 C 11 11
118 Aruba 28012 A 11 11
119 Aruba 28013 C 11 11
120 Aruba 28014 T 11 11
121 Aruba 28015 T 11 11
122 Aruba 28016 C 11 11
123 Aruba 28017 T 11 11
124 Aruba 28018 A 11 11
125 Aruba 28019 T 11 11
126 Aruba 28020 T 11 11
127 Aruba 28021 C 11 11
128 Aruba 28022 T 11 11
129 Aruba 28023 A 11 11
130 Aruba 28024 A 11 11
131 Aruba 28025 A 11 11
132 Aruba 28026 T 11 11
133 Aruba 28027 G 11 11
134 Aruba 28028 G 11 11
135 Aruba 28029 T 11 11
136 Aruba 28030 A 11 11
137 Aruba 28031 T 11 11
138 Aruba 28032 A 11 11
139 Aruba 28033 T 11 11
140 Aruba 28034 T 11 11
141 Aruba 28035 A 11 11
142 Aruba 28036 G 11 11
143 Aruba 28037 A 11 11
144 Aruba 28038 G 11 11
145 Aruba 28039 T 11 11
146 Aruba 28040 A 11 11
147 Aruba 28041 G 11 11
148 Aruba 28042 G 11 11
149 Aruba 28043 A 11 11
150 Aruba 28044 G 11 11
151 Aruba 28045 C 11 11
152 Aruba 28046 T 11 11
153 Aruba 28047 A 11 11
154 Aruba 28048 G 11 11
155 Aruba 28049 A 11 11
156 Aruba 28050 A 11 11
157 Aruba 28051 A 11 11
158 Aruba 28052 A 11 11
159 Aruba 28053 T 11 11
160 Aruba 28054 C 11 11
161 Aruba 28055 A 11 11
162 Aruba 28056 G 11 11
163 Aruba 28057 C 11 11
164 Aruba 28058 A 11 11
165 Aruba 28059 C 11 11
166 Aruba 28060 C 11 11
167 Aruba 28061 T 11 11
168 Aruba 28062 T 11 11
169 Aruba 28063 T 11 11
170 Aruba 28064 A 11 11
171 Aruba 28065 A 11 11
172 Aruba 28066 T 11 11
173 Aruba 28067 T 11 11
174 Aruba 28068 G 11 11
175 Aruba 28069 A 11 11
176 Aruba 28070 A 11 11
177 Aruba 28071 T 11 11
178 Aruba 28072 T 11 11
179 Aruba 28073 G 11 11
180 Aruba 28074 T 11 11
181 Aruba 28075 G 11 11
182 Aruba 28076 C 11 11
183 Aruba 28077 G 11 11
184 Aruba 28078 T 11 11
185 Aruba 28079 G 11 11
186 Aruba 28080 G 11 11
187 Aruba 28081 A 11 11
188 Aruba 28082 T 11 11
189 Aruba 28083 G 11 11
190 Aruba 28084 A 11 11
191 Aruba 28085 G 11 11
192 Aruba 28086 G 11 11
193 Aruba 28087 C 11 11
194 Aruba 28088 T 11 11
195 Aruba 28089 G 11 11
196 Aruba 28090 G 11 11
197 Aruba 28091 T 11 11
198 Aruba 28092 T 11 11
199 Aruba 28093 C 11 11
200 Aruba 28094 T 11 11
201 Aruba 28095 A 11 11
202 Aruba 28096 A 11 11
203 Aruba 28097 A 11 11
204 Aruba 28098 T 11 11
205 Aruba 28099 C 11 11
206 Aruba 28100 A 11 11
207 Aruba 28101 C 11 11
208 Aruba 28102 C 11 11
209 Aruba 28103 C 11 11
210 Aruba 28104 A 11 11
211 Aruba 28105 T 11 11
212 Aruba 28106 T 11 11
213 Aruba 28107 C 11 11
214 Aruba 28108 A 11 11
215 Aruba 28109 G 11 11
216 Aruba 28110 T 11 11
217 Aruba 28111 A 11 11
218 Aruba 28112 C 11 11
219 Aruba 28113 A 11 11
220 Aruba 28114 T 11 11
221 Aruba 28115 C 11 11
222 Aruba 28116 G 11 11
223 Aruba 28117 A 11 11
224 Aruba 28118 T 11 11
225 Aruba 28119 A 11 11
226 Aruba 28120 T 11 11
227 Aruba 28121 C 11 11
228 Aruba 28122 G 11 11
229 Aruba 28123 G 11 11
230 Aruba 28124 T 11 11
231 Aruba 28125 A 11 11
232 Aruba 28126 A 11 11
233 Aruba 28127 T 11 11
234 Aruba 28128 T 11 11
235 Aruba 28129 A 11 11
236 Aruba 28130 T 11 11
237 Aruba 28131 A 11 11
238 Aruba 28132 C 11 11
239 Aruba 28133 A 11 11
240 Aruba 28134 G 11 11
241 Aruba 28135 T 11 11
242 Aruba 28136 T 11 11
243 Aruba 28137 T 11 11
244 Aruba 28138 C 11 11
245 Aruba 28139 C 11 11
246 Aruba 28140 T 11 11
247 Aruba 28141 G 11 11
248 Aruba 28142 T 11 11
249 Aruba 28143 T 11 11
250 Aruba 28144 T 11 11
251 Aruba 28145 A 11 11
252 Aruba 28146 C 11 11
253 Aruba 28147 C 11 11
254 Aruba 28148 T 11 11
255 Aruba 28149 T 11 11
256 Aruba 28150 T 11 11
257 Aruba 28151 T 11 11
258 Aruba 28152 A 11 11
259 Aruba 28153 C 11 11
260 Aruba 28154 A 11 11
261 Aruba 28155 A 11 11
262 Aruba 28156 T 11 11
263 Aruba 28157 T 11 11
264 Aruba 28158 A 11 11
265 Aruba 28159 A 11 11
266 Aruba 28160 T 11 11
267 Aruba 28161 T 11 11
268 Aruba 28162 G 11 11
269 Aruba 28163 C 11 11
270 Aruba 28164 C 11 11
271 Aruba 28165 A 11 11
272 Aruba 28166 G 11 11
273 Aruba 28167 G 11 11
274 Aruba 28168 A 11 11
275 Aruba 28169 A 11 11
276 Aruba 28170 C 11 11
277 Aruba 28171 C 11 11
278 Aruba 28172 T 11 11
279 Aruba 28173 A 11 11
280 Aruba 28174 A 11 11
281 Aruba 28175 A 11 11
282 Aruba 28176 T 11 11
283 Aruba 28177 T 11 11
284 Aruba 28178 G 11 11
285 Aruba 28179 G 11 11
286 Aruba 28180 G 11 11
287 Aruba 28181 T 11 11
288 Aruba 28182 A 11 11
289 Aruba 28183 G 11 11
290 Aruba 28184 T 11 11
291 Aruba 28185 C 11 11
292 Aruba 28186 T 11 11
293 Aruba 28187 T 11 11
294 Aruba 28188 G 11 11
295 Aruba 28189 T 11 11
296 Aruba 28190 A 11 11
297 Aruba 28191 G 11 11
298 Aruba 28192 T 11 11
299 Aruba 28193 G 11 11
300 Aruba 28194 C 11 11
301 Aruba 28195 G 11 11
302 Aruba 28196 T 11 11
303 Aruba 28197 T 11 11
304 Aruba 28198 G 11 11
305 Aruba 28199 T 11 11
306 Aruba 28200 T 11 11
307 Aruba 28201 C 11 11
308 Aruba 28202 G 11 11
309 Aruba 28203 T 11 11
310 Aruba 28204 T 11 11
311 Aruba 28205 C 11 11
312 Aruba 28206 T 11 11
313 Aruba 28207 A 11 11
314 Aruba 28208 T 11 11
315 Aruba 28209 G 11 11
316 Aruba 28210 A 11 11
317 Aruba 28211 A 11 11
318 Aruba 28212 G 11 11
319 Aruba 28213 A 11 11
320 Aruba 28214 C 11 11
321 Aruba 28215 T 11 11
322 Aruba 28216 T 11 11
323 Aruba 28217 T 11 11
324 Aruba 28218 T 11 11
325 Aruba 28219 T 11 11
326 Aruba 28220 A 11 11
327 Aruba 28221 G 11 11
328 Aruba 28222 A 11 11
329 Aruba 28223 G 11 11
330 Aruba 28224 T 11 11
331 Aruba 28225 A 11 11
332 Aruba 28226 T 11 11
333 Aruba 28227 C 11 11
334 Aruba 28228 A 11 11
335 Aruba 28229 T 11 11
336 Aruba 28230 G 11 11
337 Aruba 28231 A 11 11
338 Aruba 28232 C 11 11
339 Aruba 28233 G 11 11
340 Aruba 28234 T 11 11
341 Aruba 28235 T 11 11
342 Aruba 28236 C 11 11
343 Aruba 28237 G 11 11
344 Aruba 28238 T 11 11
345 Aruba 28239 G 11 11
346 Aruba 28240 T 11 11
347 Aruba 28241 T 11 11
348 Aruba 28242 G 11 11
349 Aruba 28243 T 11 11
350 Aruba 28244 T 11 11
351 Aruba 28245 T 11 11
352 Aruba 28246 T 11 11
353 Aruba 28247 A 11 11
354 Aruba 28248 G 11 11
355 Aruba 28249 A 11 11
356 Aruba 28250 T 11 11
357 Aruba 28251 T 11 11
358 Aruba 28252 T 11 11
359 Aruba 28253 C T 11 10 Phe120Phe
360 Aruba 28254 A 11 11
361 Aruba 28255 T 11 11
362 Aruba 28256 C 11 11
363 Aruba 28257 T 11 11
364 Aruba 28258 A 11 11
365 Aruba 28259 A 11 11