National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Andorra 27894 A 1 1
1 Andorra 27895 T 1 1
2 Andorra 27896 G 1 1
3 Andorra 27897 A 1 1
4 Andorra 27898 A 1 1
5 Andorra 27899 A 1 1
6 Andorra 27900 T 1 1
7 Andorra 27901 T 1 1
8 Andorra 27902 T 1 1
9 Andorra 27903 C 1 1
10 Andorra 27904 T 1 1
11 Andorra 27905 T 1 1
12 Andorra 27906 G 1 1
13 Andorra 27907 T 1 1
14 Andorra 27908 T 1 1
15 Andorra 27909 T 1 1
16 Andorra 27910 T 1 1
17 Andorra 27911 C 1 1
18 Andorra 27912 T 1 1
19 Andorra 27913 T 1 1
20 Andorra 27914 A 1 1
21 Andorra 27915 G 1 1
22 Andorra 27916 G 1 1
23 Andorra 27917 A 1 1
24 Andorra 27918 A 1 1
25 Andorra 27919 T 1 1
26 Andorra 27920 C 1 1
27 Andorra 27921 A 1 1
28 Andorra 27922 T 1 1
29 Andorra 27923 C 1 1
30 Andorra 27924 A 1 1
31 Andorra 27925 C 1 1
32 Andorra 27926 A 1 1
33 Andorra 27927 A 1 1
34 Andorra 27928 C 1 1
35 Andorra 27929 T 1 1
36 Andorra 27930 G 1 1
37 Andorra 27931 T 1 1
38 Andorra 27932 A 1 1
39 Andorra 27933 G 1 1
40 Andorra 27934 C 1 1
41 Andorra 27935 T 1 1
42 Andorra 27936 G 1 1
43 Andorra 27937 C 1 1
44 Andorra 27938 A 1 1
45 Andorra 27939 T 1 1
46 Andorra 27940 T 1 1
47 Andorra 27941 T 1 1
48 Andorra 27942 C 1 1
49 Andorra 27943 A 1 1
50 Andorra 27944 C 1 1
51 Andorra 27945 C 1 1
52 Andorra 27946 A 1 1
53 Andorra 27947 A 1 1
54 Andorra 27948 G 1 1
55 Andorra 27949 A 1 1
56 Andorra 27950 A 1 1
57 Andorra 27951 T 1 1
58 Andorra 27952 G 1 1
59 Andorra 27953 T 1 1
60 Andorra 27954 A 1 1
61 Andorra 27955 G 1 1
62 Andorra 27956 T 1 1
63 Andorra 27957 T 1 1
64 Andorra 27958 T 1 1
65 Andorra 27959 A 1 1
66 Andorra 27960 C 1 1
67 Andorra 27961 A 1 1
68 Andorra 27962 G 1 1
69 Andorra 27963 T 1 1
70 Andorra 27964 C 1 1
71 Andorra 27965 A 1 1
72 Andorra 27966 T 1 1
73 Andorra 27967 G 1 1
74 Andorra 27968 T 1 1
75 Andorra 27969 A 1 1
76 Andorra 27970 C 1 1
77 Andorra 27971 T 1 1
78 Andorra 27972 C 1 1
79 Andorra 27973 A 1 1
80 Andorra 27974 A 1 1
81 Andorra 27975 C 1 1
82 Andorra 27976 A 1 1
83 Andorra 27977 T 1 1
84 Andorra 27978 C 1 1
85 Andorra 27979 A 1 1
86 Andorra 27980 A 1 1
87 Andorra 27981 C 1 1
88 Andorra 27982 C 1 1
89 Andorra 27983 A 1 1
90 Andorra 27984 T 1 1
91 Andorra 27985 A 1 1
92 Andorra 27986 T 1 1
93 Andorra 27987 G 1 1
94 Andorra 27988 T 1 1
95 Andorra 27989 A 1 1
96 Andorra 27990 G 1 1
97 Andorra 27991 T 1 1
98 Andorra 27992 T 1 1
99 Andorra 27993 G 1 1
100 Andorra 27994 A 1 1
101 Andorra 27995 T 1 1
102 Andorra 27996 G 1 1
103 Andorra 27997 A 1 1
104 Andorra 27998 C 1 1
105 Andorra 27999 C 1 1
106 Andorra 28000 C 1 1
107 Andorra 28001 G 1 1
108 Andorra 28002 T 1 1
109 Andorra 28003 G 1 1
110 Andorra 28004 T 1 1
111 Andorra 28005 C 1 1
112 Andorra 28006 C 1 1
113 Andorra 28007 T 1 1
114 Andorra 28008 A 1 1
115 Andorra 28009 T 1 1
116 Andorra 28010 T 1 1
117 Andorra 28011 C 1 1
118 Andorra 28012 A 1 1
119 Andorra 28013 C 1 1
120 Andorra 28014 T 1 1
121 Andorra 28015 T 1 1
122 Andorra 28016 C 1 1
123 Andorra 28017 T 1 1
124 Andorra 28018 A 1 1
125 Andorra 28019 T 1 1
126 Andorra 28020 T 1 1
127 Andorra 28021 C 1 1
128 Andorra 28022 T 1 1
129 Andorra 28023 A 1 1
130 Andorra 28024 A 1 1
131 Andorra 28025 A 1 1
132 Andorra 28026 T 1 1
133 Andorra 28027 G 1 1
134 Andorra 28028 G 1 1
135 Andorra 28029 T 1 1
136 Andorra 28030 A 1 1
137 Andorra 28031 T 1 1
138 Andorra 28032 A 1 1
139 Andorra 28033 T 1 1
140 Andorra 28034 T 1 1
141 Andorra 28035 A 1 1
142 Andorra 28036 G 1 1
143 Andorra 28037 A 1 1
144 Andorra 28038 G 1 1
145 Andorra 28039 T 1 1
146 Andorra 28040 A 1 1
147 Andorra 28041 G 1 1
148 Andorra 28042 G 1 1
149 Andorra 28043 A 1 1
150 Andorra 28044 G 1 1
151 Andorra 28045 C 1 1
152 Andorra 28046 T 1 1
153 Andorra 28047 A 1 1
154 Andorra 28048 G 1 1
155 Andorra 28049 A 1 1
156 Andorra 28050 A 1 1
157 Andorra 28051 A 1 1
158 Andorra 28052 A 1 1
159 Andorra 28053 T 1 1
160 Andorra 28054 C 1 1
161 Andorra 28055 A 1 1
162 Andorra 28056 G 1 1
163 Andorra 28057 C 1 1
164 Andorra 28058 A 1 1
165 Andorra 28059 C 1 1
166 Andorra 28060 C 1 1
167 Andorra 28061 T 1 1
168 Andorra 28062 T 1 1
169 Andorra 28063 T 1 1
170 Andorra 28064 A 1 1
171 Andorra 28065 A 1 1
172 Andorra 28066 T 1 1
173 Andorra 28067 T 1 1
174 Andorra 28068 G 1 1
175 Andorra 28069 A 1 1
176 Andorra 28070 A 1 1
177 Andorra 28071 T 1 1
178 Andorra 28072 T 1 1
179 Andorra 28073 G 1 1
180 Andorra 28074 T 1 1
181 Andorra 28075 G 1 1
182 Andorra 28076 C 1 1
183 Andorra 28077 G 1 1
184 Andorra 28078 T 1 1
185 Andorra 28079 G 1 1
186 Andorra 28080 G 1 1
187 Andorra 28081 A 1 1
188 Andorra 28082 T 1 1
189 Andorra 28083 G 1 1
190 Andorra 28084 A 1 1
191 Andorra 28085 G 1 1
192 Andorra 28086 G 1 1
193 Andorra 28087 C 1 1
194 Andorra 28088 T 1 1
195 Andorra 28089 G 1 1
196 Andorra 28090 G 1 1
197 Andorra 28091 T 1 1
198 Andorra 28092 T 1 1
199 Andorra 28093 C 1 1
200 Andorra 28094 T 1 1
201 Andorra 28095 A 1 1
202 Andorra 28096 A 1 1
203 Andorra 28097 A 1 1
204 Andorra 28098 T 1 1
205 Andorra 28099 C 1 1
206 Andorra 28100 A 1 1
207 Andorra 28101 C 1 1
208 Andorra 28102 C 1 1
209 Andorra 28103 C 1 1
210 Andorra 28104 A 1 1
211 Andorra 28105 T 1 1
212 Andorra 28106 T 1 1
213 Andorra 28107 C 1 1
214 Andorra 28108 A 1 1
215 Andorra 28109 G 1 1
216 Andorra 28110 T 1 1
217 Andorra 28111 A 1 1
218 Andorra 28112 C 1 1
219 Andorra 28113 A 1 1
220 Andorra 28114 T 1 1
221 Andorra 28115 C 1 1
222 Andorra 28116 G 1 1
223 Andorra 28117 A 1 1
224 Andorra 28118 T 1 1
225 Andorra 28119 A 1 1
226 Andorra 28120 T 1 1
227 Andorra 28121 C 1 1
228 Andorra 28122 G 1 1
229 Andorra 28123 G 1 1
230 Andorra 28124 T 1 1
231 Andorra 28125 A 1 1
232 Andorra 28126 A 1 1
233 Andorra 28127 T 1 1
234 Andorra 28128 T 1 1
235 Andorra 28129 A 1 1
236 Andorra 28130 T 1 1
237 Andorra 28131 A 1 1
238 Andorra 28132 C 1 1
239 Andorra 28133 A 1 1
240 Andorra 28134 G 1 1
241 Andorra 28135 T 1 1
242 Andorra 28136 T 1 1
243 Andorra 28137 T 1 1
244 Andorra 28138 C 1 1
245 Andorra 28139 C 1 1
246 Andorra 28140 T 1 1
247 Andorra 28141 G 1 1
248 Andorra 28142 T 1 1
249 Andorra 28143 T 1 1
250 Andorra 28144 T 1 1
251 Andorra 28145 A 1 1
252 Andorra 28146 C 1 1
253 Andorra 28147 C 1 1
254 Andorra 28148 T 1 1
255 Andorra 28149 T 1 1
256 Andorra 28150 T 1 1
257 Andorra 28151 T 1 1
258 Andorra 28152 A 1 1
259 Andorra 28153 C 1 1
260 Andorra 28154 A 1 1
261 Andorra 28155 A 1 1
262 Andorra 28156 T 1 1
263 Andorra 28157 T 1 1
264 Andorra 28158 A 1 1
265 Andorra 28159 A 1 1
266 Andorra 28160 T 1 1
267 Andorra 28161 T 1 1
268 Andorra 28162 G 1 1
269 Andorra 28163 C 1 1
270 Andorra 28164 C 1 1
271 Andorra 28165 A 1 1
272 Andorra 28166 G 1 1
273 Andorra 28167 G 1 1
274 Andorra 28168 A 1 1
275 Andorra 28169 A 1 1
276 Andorra 28170 C 1 1
277 Andorra 28171 C 1 1
278 Andorra 28172 T 1 1
279 Andorra 28173 A 1 1
280 Andorra 28174 A 1 1
281 Andorra 28175 A 1 1
282 Andorra 28176 T 1 1
283 Andorra 28177 T 1 1
284 Andorra 28178 G 1 1
285 Andorra 28179 G 1 1
286 Andorra 28180 G 1 1
287 Andorra 28181 T 1 1
288 Andorra 28182 A 1 1
289 Andorra 28183 G 1 1
290 Andorra 28184 T 1 1
291 Andorra 28185 C 1 1
292 Andorra 28186 T 1 1
293 Andorra 28187 T 1 1
294 Andorra 28188 G 1 1
295 Andorra 28189 T 1 1
296 Andorra 28190 A 1 1
297 Andorra 28191 G 1 1
298 Andorra 28192 T 1 1
299 Andorra 28193 G 1 1
300 Andorra 28194 C 1 1
301 Andorra 28195 G 1 1
302 Andorra 28196 T 1 1
303 Andorra 28197 T 1 1
304 Andorra 28198 G 1 1
305 Andorra 28199 T 1 1
306 Andorra 28200 T 1 1
307 Andorra 28201 C 1 1
308 Andorra 28202 G 1 1
309 Andorra 28203 T 1 1
310 Andorra 28204 T 1 1
311 Andorra 28205 C 1 1
312 Andorra 28206 T 1 1
313 Andorra 28207 A 1 1
314 Andorra 28208 T 1 1
315 Andorra 28209 G 1 1
316 Andorra 28210 A 1 1
317 Andorra 28211 A 1 1
318 Andorra 28212 G 1 1
319 Andorra 28213 A 1 1
320 Andorra 28214 C 1 1
321 Andorra 28215 T 1 1
322 Andorra 28216 T 1 1
323 Andorra 28217 T 1 1
324 Andorra 28218 T 1 1
325 Andorra 28219 T 1 1
326 Andorra 28220 A 1 1
327 Andorra 28221 G 1 1
328 Andorra 28222 A 1 1
329 Andorra 28223 G 1 1
330 Andorra 28224 T 1 1
331 Andorra 28225 A 1 1
332 Andorra 28226 T 1 1
333 Andorra 28227 C 1 1
334 Andorra 28228 A 1 1
335 Andorra 28229 T 1 1
336 Andorra 28230 G 1 1
337 Andorra 28231 A 1 1
338 Andorra 28232 C 1 1
339 Andorra 28233 G 1 1
340 Andorra 28234 T 1 1
341 Andorra 28235 T 1 1
342 Andorra 28236 C 1 1
343 Andorra 28237 G 1 1
344 Andorra 28238 T 1 1
345 Andorra 28239 G 1 1
346 Andorra 28240 T 1 1
347 Andorra 28241 T 1 1
348 Andorra 28242 G 1 1
349 Andorra 28243 T 1 1
350 Andorra 28244 T 1 1
351 Andorra 28245 T 1 1
352 Andorra 28246 T 1 1
353 Andorra 28247 A 1 1
354 Andorra 28248 G 1 1
355 Andorra 28249 A 1 1
356 Andorra 28250 T 1 1
357 Andorra 28251 T 1 1
358 Andorra 28252 T 1 1
359 Andorra 28253 C 1 1
360 Andorra 28254 A 1 1
361 Andorra 28255 T 1 1
362 Andorra 28256 C 1 1
363 Andorra 28257 T 1 1
364 Andorra 28258 A 1 1
365 Andorra 28259 A 1 1