National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C 1   21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                     1                  
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Albania 27894 A 1 1
1 Albania 27895 T 1 1
2 Albania 27896 G 1 1
3 Albania 27897 A 1 1
4 Albania 27898 A 1 1
5 Albania 27899 A 1 1
6 Albania 27900 T 1 1
7 Albania 27901 T 1 1
8 Albania 27902 T 1 1
9 Albania 27903 C 1 1
10 Albania 27904 T 1 1
11 Albania 27905 T 1 1
12 Albania 27906 G 1 1
13 Albania 27907 T 1 1
14 Albania 27908 T 1 1
15 Albania 27909 T 1 1
16 Albania 27910 T 1 1
17 Albania 27911 C 1 1
18 Albania 27912 T 1 1
19 Albania 27913 T 1 1
20 Albania 27914 A 1 1
21 Albania 27915 G 1 1
22 Albania 27916 G 1 1
23 Albania 27917 A 1 1
24 Albania 27918 A 1 1
25 Albania 27919 T 1 1
26 Albania 27920 C 1 1
27 Albania 27921 A 1 1
28 Albania 27922 T 1 1
29 Albania 27923 C 1 1
30 Albania 27924 A 1 1
31 Albania 27925 C 1 1
32 Albania 27926 A 1 1
33 Albania 27927 A 1 1
34 Albania 27928 C 1 1
35 Albania 27929 T 1 1
36 Albania 27930 G 1 1
37 Albania 27931 T 1 1
38 Albania 27932 A 1 1
39 Albania 27933 G 1 1
40 Albania 27934 C 1 1
41 Albania 27935 T 1 1
42 Albania 27936 G 1 1
43 Albania 27937 C 1 1
44 Albania 27938 A 1 1
45 Albania 27939 T 1 1
46 Albania 27940 T 1 1
47 Albania 27941 T 1 1
48 Albania 27942 C 1 1
49 Albania 27943 A 1 1
50 Albania 27944 C 1 1
51 Albania 27945 C 1 1
52 Albania 27946 A 1 1
53 Albania 27947 A 1 1
54 Albania 27948 G 1 1
55 Albania 27949 A 1 1
56 Albania 27950 A 1 1
57 Albania 27951 T 1 1
58 Albania 27952 G 1 1
59 Albania 27953 T 1 1
60 Albania 27954 A 1 1
61 Albania 27955 G 1 1
62 Albania 27956 T 1 1
63 Albania 27957 T 1 1
64 Albania 27958 T 1 1
65 Albania 27959 A 1 1
66 Albania 27960 C 1 1
67 Albania 27961 A 1 1
68 Albania 27962 G 1 1
69 Albania 27963 T 1 1
70 Albania 27964 C 1 1
71 Albania 27965 A 1 1
72 Albania 27966 T 1 1
73 Albania 27967 G 1 1
74 Albania 27968 T 1 1
75 Albania 27969 A 1 1
76 Albania 27970 C 1 1
77 Albania 27971 T 1 1
78 Albania 27972 C 1 1
79 Albania 27973 A 1 1
80 Albania 27974 A 1 1
81 Albania 27975 C 1 1
82 Albania 27976 A 1 1
83 Albania 27977 T 1 1
84 Albania 27978 C 1 1
85 Albania 27979 A 1 1
86 Albania 27980 A 1 1
87 Albania 27981 C 1 1
88 Albania 27982 C 1 1
89 Albania 27983 A 1 1
90 Albania 27984 T 1 1
91 Albania 27985 A 1 1
92 Albania 27986 T 1 1
93 Albania 27987 G 1 1
94 Albania 27988 T 1 1
95 Albania 27989 A 1 1
96 Albania 27990 G 1 1
97 Albania 27991 T 1 1
98 Albania 27992 T 1 1
99 Albania 27993 G 1 1
100 Albania 27994 A 1 1
101 Albania 27995 T 1 1
102 Albania 27996 G 1 1
103 Albania 27997 A 1 1
104 Albania 27998 C 1 1
105 Albania 27999 C 1 1
106 Albania 28000 C 1 1
107 Albania 28001 G 1 1
108 Albania 28002 T 1 1
109 Albania 28003 G 1 1
110 Albania 28004 T 1 1
111 Albania 28005 C 1 1
112 Albania 28006 C 1 1
113 Albania 28007 T 1 1
114 Albania 28008 A 1 1
115 Albania 28009 T 1 1
116 Albania 28010 T 1 1
117 Albania 28011 C 1 1
118 Albania 28012 A 1 1
119 Albania 28013 C 1 1
120 Albania 28014 T 1 1
121 Albania 28015 T 1 1
122 Albania 28016 C 1 1
123 Albania 28017 T 1 1
124 Albania 28018 A 1 1
125 Albania 28019 T 1 1
126 Albania 28020 T 1 1
127 Albania 28021 C 1 1
128 Albania 28022 T 1 1
129 Albania 28023 A 1 1
130 Albania 28024 A 1 1
131 Albania 28025 A 1 1
132 Albania 28026 T 1 1
133 Albania 28027 G 1 1
134 Albania 28028 G 1 1
135 Albania 28029 T 1 1
136 Albania 28030 A 1 1
137 Albania 28031 T 1 1
138 Albania 28032 A 1 1
139 Albania 28033 T 1 1
140 Albania 28034 T 1 1
141 Albania 28035 A 1 1
142 Albania 28036 G 1 1
143 Albania 28037 A 1 1
144 Albania 28038 G 1 1
145 Albania 28039 T 1 1
146 Albania 28040 A 1 1
147 Albania 28041 G 1 1
148 Albania 28042 G 1 1
149 Albania 28043 A 1 1
150 Albania 28044 G 1 1
151 Albania 28045 C 1 1
152 Albania 28046 T 1 1
153 Albania 28047 A 1 1
154 Albania 28048 G 1 1
155 Albania 28049 A 1 1
156 Albania 28050 A 1 1
157 Albania 28051 A 1 1
158 Albania 28052 A 1 1
159 Albania 28053 T 1 1
160 Albania 28054 C 1 1
161 Albania 28055 A 1 1
162 Albania 28056 G 1 1
163 Albania 28057 C 1 1
164 Albania 28058 A 1 1
165 Albania 28059 C 1 1
166 Albania 28060 C 1 1
167 Albania 28061 T 1 1
168 Albania 28062 T 1 1
169 Albania 28063 T 1 1
170 Albania 28064 A 1 1
171 Albania 28065 A 1 1
172 Albania 28066 T 1 1
173 Albania 28067 T 1 1
174 Albania 28068 G 1 1
175 Albania 28069 A 1 1
176 Albania 28070 A 1 1
177 Albania 28071 T 1 1
178 Albania 28072 T 1 1
179 Albania 28073 G 1 1
180 Albania 28074 T 1 1
181 Albania 28075 G 1 1
182 Albania 28076 C A 1 0 Cys61*
183 Albania 28077 G A 1 0 Val62Met
184 Albania 28078 T 1 1
185 Albania 28079 G 1 1
186 Albania 28080 G 1 1
187 Albania 28081 A 1 1
188 Albania 28082 T 1 1
189 Albania 28083 G 1 1
190 Albania 28084 A 1 1
191 Albania 28085 G 1 1
192 Albania 28086 G 1 1
193 Albania 28087 C 1 1
194 Albania 28088 T 1 1
195 Albania 28089 G 1 1
196 Albania 28090 G 1 1
197 Albania 28091 T 1 1
198 Albania 28092 T 1 1
199 Albania 28093 C 1 1
200 Albania 28094 T 1 1
201 Albania 28095 A 1 1
202 Albania 28096 A 1 1
203 Albania 28097 A 1 1
204 Albania 28098 T 1 1
205 Albania 28099 C 1 1
206 Albania 28100 A 1 1
207 Albania 28101 C 1 1
208 Albania 28102 C 1 1
209 Albania 28103 C 1 1
210 Albania 28104 A 1 1
211 Albania 28105 T 1 1
212 Albania 28106 T 1 1
213 Albania 28107 C 1 1
214 Albania 28108 A 1 1
215 Albania 28109 G 1 1
216 Albania 28110 T 1 1
217 Albania 28111 A 1 1
218 Albania 28112 C 1 1
219 Albania 28113 A 1 1
220 Albania 28114 T 1 1
221 Albania 28115 C 1 1
222 Albania 28116 G 1 1
223 Albania 28117 A 1 1
224 Albania 28118 T 1 1
225 Albania 28119 A 1 1
226 Albania 28120 T 1 1
227 Albania 28121 C 1 1
228 Albania 28122 G 1 1
229 Albania 28123 G 1 1
230 Albania 28124 T 1 1
231 Albania 28125 A 1 1
232 Albania 28126 A 1 1
233 Albania 28127 T 1 1
234 Albania 28128 T 1 1
235 Albania 28129 A 1 1
236 Albania 28130 T 1 1
237 Albania 28131 A 1 1
238 Albania 28132 C 1 1
239 Albania 28133 A 1 1
240 Albania 28134 G 1 1
241 Albania 28135 T 1 1
242 Albania 28136 T 1 1
243 Albania 28137 T 1 1
244 Albania 28138 C 1 1
245 Albania 28139 C 1 1
246 Albania 28140 T 1 1
247 Albania 28141 G 1 1
248 Albania 28142 T 1 1
249 Albania 28143 T 1 1
250 Albania 28144 T 1 1
251 Albania 28145 A 1 1
252 Albania 28146 C 1 1
253 Albania 28147 C 1 1
254 Albania 28148 T 1 1
255 Albania 28149 T 1 1
256 Albania 28150 T 1 1
257 Albania 28151 T 1 1
258 Albania 28152 A 1 1
259 Albania 28153 C 1 1
260 Albania 28154 A 1 1
261 Albania 28155 A 1 1
262 Albania 28156 T 1 1
263 Albania 28157 T 1 1
264 Albania 28158 A 1 1
265 Albania 28159 A 1 1
266 Albania 28160 T 1 1
267 Albania 28161 T 1 1
268 Albania 28162 G 1 1
269 Albania 28163 C 1 1
270 Albania 28164 C 1 1
271 Albania 28165 A 1 1
272 Albania 28166 G 1 1
273 Albania 28167 G 1 1
274 Albania 28168 A 1 1
275 Albania 28169 A 1 1
276 Albania 28170 C 1 1
277 Albania 28171 C 1 1
278 Albania 28172 T 1 1
279 Albania 28173 A 1 1
280 Albania 28174 A 1 1
281 Albania 28175 A 1 1
282 Albania 28176 T 1 1
283 Albania 28177 T 1 1
284 Albania 28178 G 1 1
285 Albania 28179 G 1 1
286 Albania 28180 G 1 1
287 Albania 28181 T 1 1
288 Albania 28182 A 1 1
289 Albania 28183 G 1 1
290 Albania 28184 T 1 1
291 Albania 28185 C 1 1
292 Albania 28186 T 1 1
293 Albania 28187 T 1 1
294 Albania 28188 G 1 1
295 Albania 28189 T 1 1
296 Albania 28190 A 1 1
297 Albania 28191 G 1 1
298 Albania 28192 T 1 1
299 Albania 28193 G 1 1
300 Albania 28194 C 1 1
301 Albania 28195 G 1 1
302 Albania 28196 T 1 1
303 Albania 28197 T 1 1
304 Albania 28198 G 1 1
305 Albania 28199 T 1 1
306 Albania 28200 T 1 1
307 Albania 28201 C 1 1
308 Albania 28202 G 1 1
309 Albania 28203 T 1 1
310 Albania 28204 T 1 1
311 Albania 28205 C 1 1
312 Albania 28206 T 1 1
313 Albania 28207 A 1 1
314 Albania 28208 T 1 1
315 Albania 28209 G 1 1
316 Albania 28210 A 1 1
317 Albania 28211 A 1 1
318 Albania 28212 G 1 1
319 Albania 28213 A 1 1
320 Albania 28214 C 1 1
321 Albania 28215 T 1 1
322 Albania 28216 T 1 1
323 Albania 28217 T 1 1
324 Albania 28218 T 1 1
325 Albania 28219 T 1 1
326 Albania 28220 A 1 1
327 Albania 28221 G 1 1
328 Albania 28222 A 1 1
329 Albania 28223 G 1 1
330 Albania 28224 T 1 1
331 Albania 28225 A 1 1
332 Albania 28226 T 1 1
333 Albania 28227 C 1 1
334 Albania 28228 A 1 1
335 Albania 28229 T 1 1
336 Albania 28230 G 1 1
337 Albania 28231 A 1 1
338 Albania 28232 C 1 1
339 Albania 28233 G 1 1
340 Albania 28234 T 1 1
341 Albania 28235 T 1 1
342 Albania 28236 C 1 1
343 Albania 28237 G 1 1
344 Albania 28238 T 1 1
345 Albania 28239 G 1 1
346 Albania 28240 T 1 1
347 Albania 28241 T 1 1
348 Albania 28242 G 1 1
349 Albania 28243 T 1 1
350 Albania 28244 T 1 1
351 Albania 28245 T 1 1
352 Albania 28246 T 1 1
353 Albania 28247 A 1 1
354 Albania 28248 G 1 1
355 Albania 28249 A 1 1
356 Albania 28250 T 1 1
357 Albania 28251 T 1 1
358 Albania 28252 T 1 1
359 Albania 28253 C 1 1
360 Albania 28254 A 1 1
361 Albania 28255 T 1 1
362 Albania 28256 C 1 1
363 Albania 28257 T 1 1
364 Albania 28258 A 1 1
365 Albania 28259 A 1 1