National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 27394 A 2 2
1 Zambia 27395 T 2 2
2 Zambia 27396 G 2 2
3 Zambia 27397 A 2 2
4 Zambia 27398 A 2 2
5 Zambia 27399 A 2 2
6 Zambia 27400 A 2 2
7 Zambia 27401 T 2 2
8 Zambia 27402 T 2 2
9 Zambia 27403 A 2 2
10 Zambia 27404 T 2 2
11 Zambia 27405 T 2 2
12 Zambia 27406 C 2 2
13 Zambia 27407 T 2 2
14 Zambia 27408 T 2 2
15 Zambia 27409 T 2 2
16 Zambia 27410 T 2 2
17 Zambia 27411 C 2 2
18 Zambia 27412 T 2 2
19 Zambia 27413 T 2 2
20 Zambia 27414 G 2 2
21 Zambia 27415 G 2 2
22 Zambia 27416 C 2 2
23 Zambia 27417 A 2 2
24 Zambia 27418 C 2 2
25 Zambia 27419 T 2 2
26 Zambia 27420 G 2 2
27 Zambia 27421 A 2 2
28 Zambia 27422 T 2 2
29 Zambia 27423 A 2 2
30 Zambia 27424 A 2 2
31 Zambia 27425 C 2 2
32 Zambia 27426 A 2 2
33 Zambia 27427 C 2 2
34 Zambia 27428 T 2 2
35 Zambia 27429 C 2 2
36 Zambia 27430 G 2 2
37 Zambia 27431 C 2 2
38 Zambia 27432 T 2 2
39 Zambia 27433 A 2 2
40 Zambia 27434 C 2 2
41 Zambia 27435 T 2 2
42 Zambia 27436 T 2 2
43 Zambia 27437 G 2 2
44 Zambia 27438 T 2 2
45 Zambia 27439 G 2 2
46 Zambia 27440 A 2 2
47 Zambia 27441 G 2 2
48 Zambia 27442 C 2 2
49 Zambia 27443 T 2 2
50 Zambia 27444 T 2 2
51 Zambia 27445 T 2 2
52 Zambia 27446 A 2 2
53 Zambia 27447 T 2 2
54 Zambia 27448 C 2 2
55 Zambia 27449 A 2 2
56 Zambia 27450 C 2 2
57 Zambia 27451 T 2 2
58 Zambia 27452 A 2 2
59 Zambia 27453 C 2 2
60 Zambia 27454 C 2 2
61 Zambia 27455 A 2 2
62 Zambia 27456 A 2 2
63 Zambia 27457 G 2 2
64 Zambia 27458 A 2 2
65 Zambia 27459 G 2 2
66 Zambia 27460 T 2 2
67 Zambia 27461 G 2 2
68 Zambia 27462 T 2 2
69 Zambia 27463 G 2 2
70 Zambia 27464 T 2 2
71 Zambia 27465 T 2 2
72 Zambia 27466 A 2 2
73 Zambia 27467 G 2 2
74 Zambia 27468 A 2 2
75 Zambia 27469 G 2 2
76 Zambia 27470 G 2 2
77 Zambia 27471 T 2 2
78 Zambia 27472 A 2 2
79 Zambia 27473 C 2 2
80 Zambia 27474 A 2 2
81 Zambia 27475 A 2 2
82 Zambia 27476 C 2 2
83 Zambia 27477 A 2 2
84 Zambia 27478 G 2 2
85 Zambia 27479 T 2 2
86 Zambia 27480 A 2 2
87 Zambia 27481 C 2 2
88 Zambia 27482 T 2 2
89 Zambia 27483 T 2 2
90 Zambia 27484 T 2 2
91 Zambia 27485 T 2 2
92 Zambia 27486 A 2 2
93 Zambia 27487 A 2 2
94 Zambia 27488 A 2 2
95 Zambia 27489 A 2 2
96 Zambia 27490 G 2 2
97 Zambia 27491 A 2 2
98 Zambia 27492 A 2 2
99 Zambia 27493 C 2 2
100 Zambia 27494 C 2 2
101 Zambia 27495 T 2 2
102 Zambia 27496 T 2 2
103 Zambia 27497 G 2 2
104 Zambia 27498 C 2 2
105 Zambia 27499 T 2 2
106 Zambia 27500 C 2 2
107 Zambia 27501 T 2 2
108 Zambia 27502 T 2 2
109 Zambia 27503 C 2 2
110 Zambia 27504 T 2 2
111 Zambia 27505 G 2 2
112 Zambia 27506 G 2 2
113 Zambia 27507 A 2 2
114 Zambia 27508 A 2 2
115 Zambia 27509 C 2 2
116 Zambia 27510 A 2 2
117 Zambia 27511 T 2 2
118 Zambia 27512 A 2 2
119 Zambia 27513 C 2 2
120 Zambia 27514 G 2 2
121 Zambia 27515 A 2 2
122 Zambia 27516 G 2 2
123 Zambia 27517 G 2 2
124 Zambia 27518 G 2 2
125 Zambia 27519 C 2 2
126 Zambia 27520 A 2 2
127 Zambia 27521 A 2 2
128 Zambia 27522 T 2 2
129 Zambia 27523 T 2 2
130 Zambia 27524 C 2 2
131 Zambia 27525 A 2 2
132 Zambia 27526 C 2 2
133 Zambia 27527 C 2 2
134 Zambia 27528 A 2 2
135 Zambia 27529 T 2 2
136 Zambia 27530 T 2 2
137 Zambia 27531 T 2 2
138 Zambia 27532 C 2 2
139 Zambia 27533 A 2 2
140 Zambia 27534 T 2 2
141 Zambia 27535 C 2 2
142 Zambia 27536 C 2 2
143 Zambia 27537 T 2 2
144 Zambia 27538 C 2 2
145 Zambia 27539 T 2 2
146 Zambia 27540 A 2 2
147 Zambia 27541 G 2 2
148 Zambia 27542 C 2 2
149 Zambia 27543 T 2 2
150 Zambia 27544 G 2 2
151 Zambia 27545 A 2 2
152 Zambia 27546 T 2 2
153 Zambia 27547 A 2 2
154 Zambia 27548 A 2 2
155 Zambia 27549 C 2 2
156 Zambia 27550 A 2 2
157 Zambia 27551 A 2 2
158 Zambia 27552 A 2 2
159 Zambia 27553 T 2 2
160 Zambia 27554 T 2 2
161 Zambia 27555 T 2 2
162 Zambia 27556 G 2 2
163 Zambia 27557 C 2 2
164 Zambia 27558 A 2 2
165 Zambia 27559 C 2 2
166 Zambia 27560 T 2 2
167 Zambia 27561 G 2 2
168 Zambia 27562 A 2 2
169 Zambia 27563 C 2 2
170 Zambia 27564 T 2 2
171 Zambia 27565 T 2 2
172 Zambia 27566 G 2 2
173 Zambia 27567 C 2 2
174 Zambia 27568 T 2 2
175 Zambia 27569 T 2 2
176 Zambia 27570 T 2 2
177 Zambia 27571 A 2 2
178 Zambia 27572 G 2 2
179 Zambia 27573 C 2 2
180 Zambia 27574 A 2 2
181 Zambia 27575 C 2 2
182 Zambia 27576 T 2 2
183 Zambia 27577 C 2 2
184 Zambia 27578 A 2 2
185 Zambia 27579 A 2 2
186 Zambia 27580 T 2 2
187 Zambia 27581 T 2 2
188 Zambia 27582 T 2 2
189 Zambia 27583 G 2 2
190 Zambia 27584 C 2 2
191 Zambia 27585 T 2 2
192 Zambia 27586 T 2 2
193 Zambia 27587 T 2 2
194 Zambia 27588 T 2 2
195 Zambia 27589 G 2 2
196 Zambia 27590 C 2 2
197 Zambia 27591 T 2 2
198 Zambia 27592 T 2 2
199 Zambia 27593 G 2 2
200 Zambia 27594 T 2 2
201 Zambia 27595 C 2 2
202 Zambia 27596 C 2 2
203 Zambia 27597 T 2 2
204 Zambia 27598 G 2 2
205 Zambia 27599 A 2 2
206 Zambia 27600 C 2 2
207 Zambia 27601 G 2 2
208 Zambia 27602 G 2 2
209 Zambia 27603 C 2 2
210 Zambia 27604 G 2 2
211 Zambia 27605 T 2 2
212 Zambia 27606 A 2 2
213 Zambia 27607 A 2 2
214 Zambia 27608 A 2 2
215 Zambia 27609 A 2 2
216 Zambia 27610 C 2 2
217 Zambia 27611 A 2 2
218 Zambia 27612 C 2 2
219 Zambia 27613 G 2 2
220 Zambia 27614 T 2 2
221 Zambia 27615 C 2 2
222 Zambia 27616 T 2 2
223 Zambia 27617 A 2 2
224 Zambia 27618 T 2 2
225 Zambia 27619 C 2 2
226 Zambia 27620 A 2 2
227 Zambia 27621 G 2 2
228 Zambia 27622 T 2 2
229 Zambia 27623 T 2 2
230 Zambia 27624 A 2 2
231 Zambia 27625 C 2 2
232 Zambia 27626 G 2 2
233 Zambia 27627 T 2 2
234 Zambia 27628 G 2 2
235 Zambia 27629 C 2 2
236 Zambia 27630 C 2 2
237 Zambia 27631 A 2 2
238 Zambia 27632 G 2 2
239 Zambia 27633 A 2 2
240 Zambia 27634 T 2 2
241 Zambia 27635 C 2 2
242 Zambia 27636 A 2 2
243 Zambia 27637 G 2 2
244 Zambia 27638 T 2 2
245 Zambia 27639 T 2 2
246 Zambia 27640 T 2 2
247 Zambia 27641 C 2 2
248 Zambia 27642 A 2 2
249 Zambia 27643 C 2 2
250 Zambia 27644 C 2 2
251 Zambia 27645 T 2 2
252 Zambia 27646 A 2 2
253 Zambia 27647 A 2 2
254 Zambia 27648 A 2 2
255 Zambia 27649 C 2 2
256 Zambia 27650 T 2 2
257 Zambia 27651 G 2 2
258 Zambia 27652 T 2 2
259 Zambia 27653 T 2 2
260 Zambia 27654 C 2 2
261 Zambia 27655 A 2 2
262 Zambia 27656 T 2 2
263 Zambia 27657 C 2 2
264 Zambia 27658 A 2 2
265 Zambia 27659 G 2 2
266 Zambia 27660 A 2 2
267 Zambia 27661 C 2 2
268 Zambia 27662 A 2 2
269 Zambia 27663 A 2 2
270 Zambia 27664 G 2 2
271 Zambia 27665 A 2 2
272 Zambia 27666 G 2 2
273 Zambia 27667 G 2 2
274 Zambia 27668 A 2 2
275 Zambia 27669 A 2 2
276 Zambia 27670 G 2 2
277 Zambia 27671 T 2 2
278 Zambia 27672 T 2 2
279 Zambia 27673 C 2 2
280 Zambia 27674 A 2 2
281 Zambia 27675 A 2 2
282 Zambia 27676 G 2 2
283 Zambia 27677 A 2 2
284 Zambia 27678 A 2 2
285 Zambia 27679 C 2 2
286 Zambia 27680 T 2 2
287 Zambia 27681 T 2 2
288 Zambia 27682 T 2 2
289 Zambia 27683 A 2 2
290 Zambia 27684 C 2 2
291 Zambia 27685 T 2 2
292 Zambia 27686 C 2 2
293 Zambia 27687 T 2 2
294 Zambia 27688 C 2 2
295 Zambia 27689 C 2 2
296 Zambia 27690 A 2 2
297 Zambia 27691 A 2 2
298 Zambia 27692 T 2 2
299 Zambia 27693 T 2 2
300 Zambia 27694 T 2 2
301 Zambia 27695 T 2 2
302 Zambia 27696 T 2 2
303 Zambia 27697 C 2 2
304 Zambia 27698 T 2 2
305 Zambia 27699 T 2 2
306 Zambia 27700 A 2 2
307 Zambia 27701 T 2 2
308 Zambia 27702 T 2 2
309 Zambia 27703 G 2 2
310 Zambia 27704 T 2 2
311 Zambia 27705 T 2 2
312 Zambia 27706 G 2 2
313 Zambia 27707 C 2 2
314 Zambia 27708 G 2 2
315 Zambia 27709 G 2 2
316 Zambia 27710 C 2 2
317 Zambia 27711 A 2 2
318 Zambia 27712 A 2 2
319 Zambia 27713 T 2 2
320 Zambia 27714 A 2 2
321 Zambia 27715 G 2 2
322 Zambia 27716 T 2 2
323 Zambia 27717 G 2 2
324 Zambia 27718 T 2 2
325 Zambia 27719 T 2 2
326 Zambia 27720 T 2 2
327 Zambia 27721 A 2 2
328 Zambia 27722 T 2 2
329 Zambia 27723 A 2 2
330 Zambia 27724 A 2 2
331 Zambia 27725 C 2 2
332 Zambia 27726 A 2 2
333 Zambia 27727 C 2 2
334 Zambia 27728 T 2 2
335 Zambia 27729 T 2 2
336 Zambia 27730 T 2 2
337 Zambia 27731 G 2 2
338 Zambia 27732 C 2 2
339 Zambia 27733 T 2 2
340 Zambia 27734 T 2 2
341 Zambia 27735 C 2 2
342 Zambia 27736 A 2 2
343 Zambia 27737 C 2 2
344 Zambia 27738 A 2 2
345 Zambia 27739 C 2 2
346 Zambia 27740 T 2 2
347 Zambia 27741 C 2 2
348 Zambia 27742 A 2 2
349 Zambia 27743 A 2 2
350 Zambia 27744 A 2 2
351 Zambia 27745 A 2 2
352 Zambia 27746 G 2 2
353 Zambia 27747 A 2 2
354 Zambia 27748 A 2 2
355 Zambia 27749 A 2 2
356 Zambia 27750 G 2 2
357 Zambia 27751 A 2 2
358 Zambia 27752 C 2 2
359 Zambia 27753 A 2 2
360 Zambia 27754 G 2 2
361 Zambia 27755 A 2 2
362 Zambia 27756 A 2 2
363 Zambia 27757 T 2 2
364 Zambia 27758 G 2 2
365 Zambia 27759 A 2 2