National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1                                    
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45         1                            
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R 1   15                                      
S     21                   1                  
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Vietnam 27394 A 116 116
1 Vietnam 27395 T 116 116
2 Vietnam 27396 G 116 116
3 Vietnam 27397 A 116 116
4 Vietnam 27398 A 116 116
5 Vietnam 27399 A 116 116
6 Vietnam 27400 A 116 116
7 Vietnam 27401 T 116 116
8 Vietnam 27402 T 116 116
9 Vietnam 27403 A 116 116
10 Vietnam 27404 T 116 116
11 Vietnam 27405 T 116 116
12 Vietnam 27406 C 116 116
13 Vietnam 27407 T 116 116
14 Vietnam 27408 T 116 116
15 Vietnam 27409 T 116 116
16 Vietnam 27410 T 116 116
17 Vietnam 27411 C 116 116
18 Vietnam 27412 T 116 116
19 Vietnam 27413 T 116 116
20 Vietnam 27414 G 116 116
21 Vietnam 27415 G 116 116
22 Vietnam 27416 C 116 116
23 Vietnam 27417 A 116 116
24 Vietnam 27418 C 116 116
25 Vietnam 27419 T 116 116
26 Vietnam 27420 G 116 116
27 Vietnam 27421 A 116 116
28 Vietnam 27422 T 116 116
29 Vietnam 27423 A 116 116
30 Vietnam 27424 A 116 116
31 Vietnam 27425 C 116 116
32 Vietnam 27426 A 116 116
33 Vietnam 27427 C 116 116
34 Vietnam 27428 T 116 116
35 Vietnam 27429 C 116 116
36 Vietnam 27430 G 116 116
37 Vietnam 27431 C 116 116
38 Vietnam 27432 T 116 116
39 Vietnam 27433 A 116 116
40 Vietnam 27434 C 116 116
41 Vietnam 27435 T 116 116
42 Vietnam 27436 T 116 116
43 Vietnam 27437 G 116 116
44 Vietnam 27438 T 116 116
45 Vietnam 27439 G 116 116
46 Vietnam 27440 A 116 116
47 Vietnam 27441 G 116 116
48 Vietnam 27442 C 116 116
49 Vietnam 27443 T 116 116
50 Vietnam 27444 T 116 116
51 Vietnam 27445 T 116 116
52 Vietnam 27446 A 116 116
53 Vietnam 27447 T 116 116
54 Vietnam 27448 C 116 116
55 Vietnam 27449 A 116 116
56 Vietnam 27450 C 116 116
57 Vietnam 27451 T 116 116
58 Vietnam 27452 A 116 116
59 Vietnam 27453 C 116 116
60 Vietnam 27454 C 116 116
61 Vietnam 27455 A 116 116
62 Vietnam 27456 A 116 116
63 Vietnam 27457 G 116 116
64 Vietnam 27458 A 116 116
65 Vietnam 27459 G 116 116
66 Vietnam 27460 T 116 116
67 Vietnam 27461 G 116 116
68 Vietnam 27462 T 116 116
69 Vietnam 27463 G 116 116
70 Vietnam 27464 T 116 116
71 Vietnam 27465 T 116 116
72 Vietnam 27466 A 116 116
73 Vietnam 27467 G 116 116
74 Vietnam 27468 A 116 116
75 Vietnam 27469 G 116 116
76 Vietnam 27470 G 116 116
77 Vietnam 27471 T 116 116
78 Vietnam 27472 A 116 116
79 Vietnam 27473 C 116 116
80 Vietnam 27474 A 116 116
81 Vietnam 27475 A 116 116
82 Vietnam 27476 C 116 116
83 Vietnam 27477 A 116 116
84 Vietnam 27478 G 116 116
85 Vietnam 27479 T 116 116
86 Vietnam 27480 A 116 116
87 Vietnam 27481 C 116 116
88 Vietnam 27482 T 116 116
89 Vietnam 27483 T 116 116
90 Vietnam 27484 T 116 116
91 Vietnam 27485 T 116 116
92 Vietnam 27486 A 116 116
93 Vietnam 27487 A 116 116
94 Vietnam 27488 A 116 116
95 Vietnam 27489 A 116 116
96 Vietnam 27490 G 116 116
97 Vietnam 27491 A 116 116
98 Vietnam 27492 A 116 116
99 Vietnam 27493 C 116 116
100 Vietnam 27494 C 116 116
101 Vietnam 27495 T 116 116
102 Vietnam 27496 T 116 116
103 Vietnam 27497 G 116 116
104 Vietnam 27498 C 116 116
105 Vietnam 27499 T 116 116
106 Vietnam 27500 C 116 116
107 Vietnam 27501 T 116 116
108 Vietnam 27502 T 116 116
109 Vietnam 27503 C 116 116
110 Vietnam 27504 T 116 116
111 Vietnam 27505 G 116 116
112 Vietnam 27506 G 116 116
113 Vietnam 27507 A 116 116
114 Vietnam 27508 A 116 116
115 Vietnam 27509 C 116 116
116 Vietnam 27510 A 116 116
117 Vietnam 27511 T 116 116
118 Vietnam 27512 A 116 116
119 Vietnam 27513 C 116 116
120 Vietnam 27514 G 116 116
121 Vietnam 27515 A 116 116
122 Vietnam 27516 G 116 116
123 Vietnam 27517 G 116 116
124 Vietnam 27518 G 116 116
125 Vietnam 27519 C 116 116
126 Vietnam 27520 A 116 116
127 Vietnam 27521 A 116 116
128 Vietnam 27522 T 116 116
129 Vietnam 27523 T 116 116
130 Vietnam 27524 C 116 116
131 Vietnam 27525 A 116 116
132 Vietnam 27526 C 116 116
133 Vietnam 27527 C 116 116
134 Vietnam 27528 A 116 116
135 Vietnam 27529 T 116 116
136 Vietnam 27530 T 116 116
137 Vietnam 27531 T 116 116
138 Vietnam 27532 C 116 116
139 Vietnam 27533 A 116 116
140 Vietnam 27534 T 116 116
141 Vietnam 27535 C 116 116
142 Vietnam 27536 C 116 116
143 Vietnam 27537 T 116 116
144 Vietnam 27538 C 116 116
145 Vietnam 27539 T 116 116
146 Vietnam 27540 A 116 116
147 Vietnam 27541 G 116 116
148 Vietnam 27542 C 116 116
149 Vietnam 27543 T 116 116
150 Vietnam 27544 G 116 116
151 Vietnam 27545 A 116 116
152 Vietnam 27546 T 116 116
153 Vietnam 27547 A 116 116
154 Vietnam 27548 A 116 116
155 Vietnam 27549 C 116 116
156 Vietnam 27550 A 116 116
157 Vietnam 27551 A 116 116
158 Vietnam 27552 A 116 116
159 Vietnam 27553 T 116 116
160 Vietnam 27554 T 116 116
161 Vietnam 27555 T 116 116
162 Vietnam 27556 G 116 116
163 Vietnam 27557 C 116 116
164 Vietnam 27558 A 116 116
165 Vietnam 27559 C 116 116
166 Vietnam 27560 T 116 116
167 Vietnam 27561 G 116 116
168 Vietnam 27562 A 116 116
169 Vietnam 27563 C 116 116
170 Vietnam 27564 T 116 116
171 Vietnam 27565 T 116 116
172 Vietnam 27566 G 116 116
173 Vietnam 27567 C 116 116
174 Vietnam 27568 T 116 116
175 Vietnam 27569 T 116 116
176 Vietnam 27570 T 116 116
177 Vietnam 27571 A 116 116
178 Vietnam 27572 G 116 116
179 Vietnam 27573 C 116 116
180 Vietnam 27574 A 116 116
181 Vietnam 27575 C 116 116
182 Vietnam 27576 T 116 116
183 Vietnam 27577 C 116 116
184 Vietnam 27578 A 116 116
185 Vietnam 27579 A 116 116
186 Vietnam 27580 T 116 116
187 Vietnam 27581 T 116 116
188 Vietnam 27582 T 116 116
189 Vietnam 27583 G 116 116
190 Vietnam 27584 C 116 116
191 Vietnam 27585 T 116 116
192 Vietnam 27586 T 116 116
193 Vietnam 27587 T 116 116
194 Vietnam 27588 T 116 116
195 Vietnam 27589 G 116 116
196 Vietnam 27590 C 116 116
197 Vietnam 27591 T 116 116
198 Vietnam 27592 T 116 116
199 Vietnam 27593 G 116 116
200 Vietnam 27594 T 116 116
201 Vietnam 27595 C 116 116
202 Vietnam 27596 C 116 116
203 Vietnam 27597 T 116 116
204 Vietnam 27598 G 116 116
205 Vietnam 27599 A 116 116
206 Vietnam 27600 C 116 116
207 Vietnam 27601 G 116 116
208 Vietnam 27602 G 116 116
209 Vietnam 27603 C 116 116
210 Vietnam 27604 G 116 116
211 Vietnam 27605 T 116 116
212 Vietnam 27606 A 116 116
213 Vietnam 27607 A 116 116
214 Vietnam 27608 A 116 116
215 Vietnam 27609 A 116 116
216 Vietnam 27610 C 116 116
217 Vietnam 27611 A 116 116
218 Vietnam 27612 C 116 116
219 Vietnam 27613 G 116 116
220 Vietnam 27614 T 116 116
221 Vietnam 27615 C 116 116
222 Vietnam 27616 T 116 116
223 Vietnam 27617 A 116 116
224 Vietnam 27618 T 116 116
225 Vietnam 27619 C 116 116
226 Vietnam 27620 A 116 116
227 Vietnam 27621 G 116 116
228 Vietnam 27622 T 116 116
229 Vietnam 27623 T 116 116
230 Vietnam 27624 A 116 116
231 Vietnam 27625 C 116 116
232 Vietnam 27626 G 116 116
233 Vietnam 27627 T 116 116
234 Vietnam 27628 G 116 116
235 Vietnam 27629 C 116 116
236 Vietnam 27630 C 116 116
237 Vietnam 27631 A T 116 115 Arg80*
238 Vietnam 27632 G 116 116
239 Vietnam 27633 A 116 116
240 Vietnam 27634 T 116 116
241 Vietnam 27635 C T 116 115 Ser81Leu
242 Vietnam 27636 A 116 116
243 Vietnam 27637 G 116 116
244 Vietnam 27638 T 116 116
245 Vietnam 27639 T 116 116
246 Vietnam 27640 T 116 116
247 Vietnam 27641 C 116 116
248 Vietnam 27642 A 116 116
249 Vietnam 27643 C 116 116
250 Vietnam 27644 C 116 116
251 Vietnam 27645 T 116 116
252 Vietnam 27646 A 116 116
253 Vietnam 27647 A 116 116
254 Vietnam 27648 A 116 116
255 Vietnam 27649 C 116 116
256 Vietnam 27650 T 116 116
257 Vietnam 27651 G 116 116
258 Vietnam 27652 T 116 116
259 Vietnam 27653 T 116 116
260 Vietnam 27654 C 116 116
261 Vietnam 27655 A 116 116
262 Vietnam 27656 T 116 116
263 Vietnam 27657 C 116 116
264 Vietnam 27658 A 116 116
265 Vietnam 27659 G 116 116
266 Vietnam 27660 A 116 116
267 Vietnam 27661 C 116 116
268 Vietnam 27662 A 116 116
269 Vietnam 27663 A 116 116
270 Vietnam 27664 G 116 116
271 Vietnam 27665 A 116 116
272 Vietnam 27666 G 116 116
273 Vietnam 27667 G 116 116
274 Vietnam 27668 A 116 116
275 Vietnam 27669 A 116 116
276 Vietnam 27670 G 116 116
277 Vietnam 27671 T 116 116
278 Vietnam 27672 T 116 116
279 Vietnam 27673 C 116 116
280 Vietnam 27674 A 116 116
281 Vietnam 27675 A 116 116
282 Vietnam 27676 G 116 116
283 Vietnam 27677 A 116 116
284 Vietnam 27678 A 116 116
285 Vietnam 27679 C T 116 114 Leu96Phe
286 Vietnam 27680 T 116 116
287 Vietnam 27681 T 116 116
288 Vietnam 27682 T 116 116
289 Vietnam 27683 A 116 116
290 Vietnam 27684 C 116 116
291 Vietnam 27685 T 116 116
292 Vietnam 27686 C 116 116
293 Vietnam 27687 T 116 116
294 Vietnam 27688 C 116 116
295 Vietnam 27689 C 116 116
296 Vietnam 27690 A 116 116
297 Vietnam 27691 A 116 116
298 Vietnam 27692 T 116 116
299 Vietnam 27693 T 116 116
300 Vietnam 27694 T 115 115
301 Vietnam 27695 T 115 115
302 Vietnam 27696 T 115 115
303 Vietnam 27697 C 115 115
304 Vietnam 27698 T 115 115
305 Vietnam 27699 T 115 115
306 Vietnam 27700 A 115 115
307 Vietnam 27701 T 115 115
308 Vietnam 27702 T 115 115
309 Vietnam 27703 G 115 115
310 Vietnam 27704 T 115 115
311 Vietnam 27705 T 115 115
312 Vietnam 27706 G 115 115
313 Vietnam 27707 C 115 115
314 Vietnam 27708 G A 115 114 Ala105Ala
315 Vietnam 27709 G 115 115
316 Vietnam 27710 C 115 115
317 Vietnam 27711 A 115 115
318 Vietnam 27712 A 115 115
319 Vietnam 27713 T 115 115
320 Vietnam 27714 A 115 115
321 Vietnam 27715 G 115 115
322 Vietnam 27716 T 115 115
323 Vietnam 27717 G 115 115
324 Vietnam 27718 T 115 115
325 Vietnam 27719 T 115 115
326 Vietnam 27720 T 115 115
327 Vietnam 27721 A 115 115
328 Vietnam 27722 T 115 115
329 Vietnam 27723 A 115 115
330 Vietnam 27724 A 115 115
331 Vietnam 27725 C 115 115
332 Vietnam 27726 A 115 115
333 Vietnam 27727 C 115 115
334 Vietnam 27728 T 115 115
335 Vietnam 27729 T 115 115
336 Vietnam 27730 T 115 115
337 Vietnam 27731 G 115 115
338 Vietnam 27732 C 115 115
339 Vietnam 27733 T 115 115
340 Vietnam 27734 T 115 115
341 Vietnam 27735 C 115 115
342 Vietnam 27736 A 115 115
343 Vietnam 27737 C 115 115
344 Vietnam 27738 A 115 115
345 Vietnam 27739 C 115 115
346 Vietnam 27740 T 115 115
347 Vietnam 27741 C 115 115
348 Vietnam 27742 A 115 115
349 Vietnam 27743 A 115 115
350 Vietnam 27744 A 115 115
351 Vietnam 27745 A 115 115
352 Vietnam 27746 G 115 115
353 Vietnam 27747 A 115 115
354 Vietnam 27748 A 115 115
355 Vietnam 27749 A 115 115
356 Vietnam 27750 G 115 115
357 Vietnam 27751 A 115 115
358 Vietnam 27752 C 115 115
359 Vietnam 27753 A 115 115
360 Vietnam 27754 G 115 115
361 Vietnam 27755 A 115 115
362 Vietnam 27756 A 115 115
363 Vietnam 27757 T 115 115
364 Vietnam 27758 G 115 115
365 Vietnam 27759 A 115 115