National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1                                    
C     18                                      
D     6                                      
E     24       1                   1          
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                   2                  
M     6                                      
N     6                                      
P     18                             1        
Q 1   15                                      
R     15               1                      
S     21                               1      
T     30               1                      
V     24 1                 1                  
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Thailand 27394 A 490 490
1 Thailand 27395 T 490 490
2 Thailand 27396 G 490 490
3 Thailand 27397 A 490 490
4 Thailand 27398 A 490 490
5 Thailand 27399 A 490 490
6 Thailand 27400 A 490 490
7 Thailand 27401 T 490 490
8 Thailand 27402 T 490 490
9 Thailand 27403 A 490 490
10 Thailand 27404 T 490 490
11 Thailand 27405 T 490 490
12 Thailand 27406 C 490 490
13 Thailand 27407 T 490 490
14 Thailand 27408 T 490 490
15 Thailand 27409 T 490 490
16 Thailand 27410 T 490 490
17 Thailand 27411 C 490 490
18 Thailand 27412 T 490 490
19 Thailand 27413 T 490 490
20 Thailand 27414 G 490 490
21 Thailand 27415 G 490 490
22 Thailand 27416 C 490 490
23 Thailand 27417 A 490 490
24 Thailand 27418 C 490 490
25 Thailand 27419 T 490 490
26 Thailand 27420 G 490 490
27 Thailand 27421 A 490 490
28 Thailand 27422 T 490 490
29 Thailand 27423 A 490 490
30 Thailand 27424 A 490 490
31 Thailand 27425 C 490 490
32 Thailand 27426 A 490 490
33 Thailand 27427 C 490 490
34 Thailand 27428 T 490 490
35 Thailand 27429 C G 490 489 Leu12Leu
36 Thailand 27430 G 490 490
37 Thailand 27431 C 490 490
38 Thailand 27432 T 490 490
39 Thailand 27433 A 490 490
40 Thailand 27434 C T 490 487 Thr14Ile
41 Thailand 27435 T 490 490
42 Thailand 27436 T 490 490
43 Thailand 27437 G 490 490
44 Thailand 27438 T 490 490
45 Thailand 27439 G 490 490
46 Thailand 27440 A 490 490
47 Thailand 27441 G 490 490
48 Thailand 27442 C 490 490
49 Thailand 27443 T 490 490
50 Thailand 27444 T 490 490
51 Thailand 27445 T 490 490
52 Thailand 27446 A 490 490
53 Thailand 27447 T 490 490
54 Thailand 27448 C 490 490
55 Thailand 27449 A 490 490
56 Thailand 27450 C 490 490
57 Thailand 27451 T 490 490
58 Thailand 27452 A 490 490
59 Thailand 27453 C 490 490
60 Thailand 27454 C 490 490
61 Thailand 27455 A 490 490
62 Thailand 27456 A 490 490
63 Thailand 27457 G 490 490
64 Thailand 27458 A 490 490
65 Thailand 27459 G 490 490
66 Thailand 27460 T 490 490
67 Thailand 27461 G 490 490
68 Thailand 27462 T 490 490
69 Thailand 27463 G 490 490
70 Thailand 27464 T 490 490
71 Thailand 27465 T 490 490
72 Thailand 27466 A 490 490
73 Thailand 27467 G 490 490
74 Thailand 27468 A 490 490
75 Thailand 27469 G 490 490
76 Thailand 27470 G 490 490
77 Thailand 27471 T 490 490
78 Thailand 27472 A 490 490
79 Thailand 27473 C 490 490
80 Thailand 27474 A 490 490
81 Thailand 27475 A 490 490
82 Thailand 27476 C 490 490
83 Thailand 27477 A 490 490
84 Thailand 27478 G 490 490
85 Thailand 27479 T 490 490
86 Thailand 27480 A 490 490
87 Thailand 27481 C 490 490
88 Thailand 27482 T 490 490
89 Thailand 27483 T 490 490
90 Thailand 27484 T 490 490
91 Thailand 27485 T 490 490
92 Thailand 27486 A 490 490
93 Thailand 27487 A 490 490
94 Thailand 27488 A 490 490
95 Thailand 27489 A 490 490
96 Thailand 27490 G 490 490
97 Thailand 27491 A 490 490
98 Thailand 27492 A 490 490
99 Thailand 27493 C 490 490
100 Thailand 27494 C 490 490
101 Thailand 27495 T 490 490
102 Thailand 27496 T 490 490
103 Thailand 27497 G 490 490
104 Thailand 27498 C 490 490
105 Thailand 27499 T 490 490
106 Thailand 27500 C 490 490
107 Thailand 27501 T A 490 489 Ser36Ser
108 Thailand 27502 T 490 490
109 Thailand 27503 C 490 490
110 Thailand 27504 T 490 490
111 Thailand 27505 G 490 490
112 Thailand 27506 G 490 490
113 Thailand 27507 A 490 490
114 Thailand 27508 A 490 490
115 Thailand 27509 C 490 490
116 Thailand 27510 A 490 490
117 Thailand 27511 T 490 490
118 Thailand 27512 A 481 481
119 Thailand 27513 C 481 481
120 Thailand 27514 G 481 481
121 Thailand 27515 A 481 481
122 Thailand 27516 G 481 481
123 Thailand 27517 G 481 481
124 Thailand 27518 G 481 481
125 Thailand 27519 C 481 481
126 Thailand 27520 A 481 481
127 Thailand 27521 A 481 481
128 Thailand 27522 T 481 481
129 Thailand 27523 T 481 481
130 Thailand 27524 C 481 481
131 Thailand 27525 A 481 481
132 Thailand 27526 C 481 481
133 Thailand 27527 C G 476 474 Pro45Arg
134 Thailand 27528 A 475 474
135 Thailand 27529 T 475 474
136 Thailand 27530 T 475 474
137 Thailand 27531 T 475 474
138 Thailand 27532 C 475 474
139 Thailand 27533 A 475 472
140 Thailand 27534 T 475 473
141 Thailand 27535 C 475 473
142 Thailand 27536 C 475 473
143 Thailand 27537 T 475 473
144 Thailand 27538 C 475 473
145 Thailand 27539 T 475 473
146 Thailand 27540 A 475 473
147 Thailand 27541 G 475 473
148 Thailand 27542 C 475 473
149 Thailand 27543 T 475 473
150 Thailand 27544 G 475 474
151 Thailand 27545 A 475 474
152 Thailand 27546 T 475 474
153 Thailand 27547 A 475 474
154 Thailand 27548 A 475 474
155 Thailand 27549 C 475 474
156 Thailand 27550 A 475 474
157 Thailand 27551 A 475 474
158 Thailand 27552 A 475 474
159 Thailand 27553 T 475 474
160 Thailand 27554 T 475 474
161 Thailand 27555 T 475 474
162 Thailand 27556 G 475 474
163 Thailand 27557 C 475 474
164 Thailand 27558 A 475 474
165 Thailand 27559 C 475 474
166 Thailand 27560 T 475 474
167 Thailand 27561 G 475 474
168 Thailand 27562 A 475 475
169 Thailand 27563 C 475 475
170 Thailand 27564 T 475 475
171 Thailand 27565 T 475 475
172 Thailand 27566 G 475 475
173 Thailand 27567 C 475 475
174 Thailand 27568 T 475 475
175 Thailand 27569 T 475 475
176 Thailand 27570 T 475 475
177 Thailand 27571 A 475 475
178 Thailand 27572 G 475 475
179 Thailand 27573 C 475 475
180 Thailand 27574 A 475 475
181 Thailand 27575 C 475 475
182 Thailand 27576 T 475 475
183 Thailand 27577 C 475 475
184 Thailand 27578 A 475 475
185 Thailand 27579 A 475 475
186 Thailand 27580 T 475 475
187 Thailand 27581 T 475 475
188 Thailand 27582 T 475 475
189 Thailand 27583 G 475 475
190 Thailand 27584 C 475 475
191 Thailand 27585 T 475 475
192 Thailand 27586 T 475 475
193 Thailand 27587 T 475 475
194 Thailand 27588 T 475 475
195 Thailand 27589 G 475 475
196 Thailand 27590 C 475 475
197 Thailand 27591 T 475 475
198 Thailand 27592 T 475 475
199 Thailand 27593 G 475 475
200 Thailand 27594 T 475 475
201 Thailand 27595 C 475 475
202 Thailand 27596 C 475 475
203 Thailand 27597 T 475 475
204 Thailand 27598 G 475 475
205 Thailand 27599 A 475 475
206 Thailand 27600 C 475 475
207 Thailand 27601 G 475 475
208 Thailand 27602 G 475 475
209 Thailand 27603 C 475 475
210 Thailand 27604 G 476 476
211 Thailand 27605 T 476 476
212 Thailand 27606 A 476 476
213 Thailand 27607 A 476 476
214 Thailand 27608 A 476 476
215 Thailand 27609 A 476 476
216 Thailand 27610 C 476 476
217 Thailand 27611 A 476 476
218 Thailand 27612 C 476 476
219 Thailand 27613 G 476 476
220 Thailand 27614 T 476 475
221 Thailand 27615 C 476 475
222 Thailand 27616 T 476 475
223 Thailand 27617 A 476 475
224 Thailand 27618 T 476 475
225 Thailand 27619 C 476 475
226 Thailand 27620 A 476 475
227 Thailand 27621 G 476 475
228 Thailand 27622 T 476 475
229 Thailand 27623 T 476 475
230 Thailand 27624 A 476 475
231 Thailand 27625 C 476 475
232 Thailand 27626 G 476 475
233 Thailand 27627 T 476 476
234 Thailand 27628 G 476 476
235 Thailand 27629 C 476 476
236 Thailand 27630 C 476 476
237 Thailand 27631 A 476 476
238 Thailand 27632 G 476 476
239 Thailand 27633 A 476 475
240 Thailand 27634 T 476 475
241 Thailand 27635 C 476 475
242 Thailand 27636 A 476 474
243 Thailand 27637 G 476 474
244 Thailand 27638 T 476 474
245 Thailand 27639 T 476 474
246 Thailand 27640 T 476 474
247 Thailand 27641 C 476 475
248 Thailand 27642 A 476 475
249 Thailand 27643 C 476 475
250 Thailand 27644 C 476 475
251 Thailand 27645 T 476 475
252 Thailand 27646 A 476 475
253 Thailand 27647 A 476 475
254 Thailand 27648 A 476 476
255 Thailand 27649 C 476 476
256 Thailand 27650 T 476 476
257 Thailand 27651 G 476 476
258 Thailand 27652 T 476 476
259 Thailand 27653 T 476 476
260 Thailand 27654 C 476 476
261 Thailand 27655 A 476 476
262 Thailand 27656 T 476 476
263 Thailand 27657 C 476 476
264 Thailand 27658 A 476 476
265 Thailand 27659 G 476 476
266 Thailand 27660 A 476 476
267 Thailand 27661 C T 476 475 Gln90*
268 Thailand 27662 A 476 476
269 Thailand 27663 A 476 476
270 Thailand 27664 G 476 476
271 Thailand 27665 A 476 476
272 Thailand 27666 G 476 476
273 Thailand 27667 G 476 476
274 Thailand 27668 A 476 476
275 Thailand 27669 A G 476 475 Glu92Glu
276 Thailand 27670 G C 476 474 Val93Leu
277 Thailand 27671 T 476 476
278 Thailand 27672 T 476 476
279 Thailand 27673 C 476 476
280 Thailand 27674 A 476 476
281 Thailand 27675 A 476 476
282 Thailand 27676 G C 476 475 Glu95Gln
283 Thailand 27677 A 476 476
284 Thailand 27678 A 476 476
285 Thailand 27679 C 476 476
286 Thailand 27680 T 476 476
287 Thailand 27681 T 476 476
288 Thailand 27682 T 476 476
289 Thailand 27683 A 476 476
290 Thailand 27684 C 476 476
291 Thailand 27685 T 476 476
292 Thailand 27686 C 476 476
293 Thailand 27687 T 476 476
294 Thailand 27688 C 476 476
295 Thailand 27689 C 476 476
296 Thailand 27690 A 476 476
297 Thailand 27691 A 475 475
298 Thailand 27692 T 475 475
299 Thailand 27693 T 475 475
300 Thailand 27694 T 474 474
301 Thailand 27695 T 474 474
302 Thailand 27696 T 474 474
303 Thailand 27697 C 474 474
304 Thailand 27698 T 474 474
305 Thailand 27699 T 474 473
306 Thailand 27700 A 474 474
307 Thailand 27701 T 474 474
308 Thailand 27702 T 474 474
309 Thailand 27703 G 474 474
310 Thailand 27704 T C 473 472 Val104Ala
311 Thailand 27705 T 473 473
312 Thailand 27706 G 473 473
313 Thailand 27707 C 473 473
314 Thailand 27708 G A 473 472 Ala105Ala
315 Thailand 27709 G 473 473
316 Thailand 27710 C 473 473
317 Thailand 27711 A 473 473
318 Thailand 27712 A 472 472
319 Thailand 27713 T 472 472
320 Thailand 27714 A 472 472
321 Thailand 27715 G 472 472
322 Thailand 27716 T 472 472
323 Thailand 27717 G 472 472
324 Thailand 27718 T 472 472
325 Thailand 27719 T 472 472
326 Thailand 27720 T 472 472
327 Thailand 27721 A 472 472
328 Thailand 27722 T 472 472
329 Thailand 27723 A 472 472
330 Thailand 27724 A 472 472
331 Thailand 27725 C 472 472
332 Thailand 27726 A 471 471
333 Thailand 27727 C 471 471
334 Thailand 27728 T 471 471
335 Thailand 27729 T 471 471
336 Thailand 27730 T 471 471
337 Thailand 27731 G 471 471
338 Thailand 27732 C 471 471
339 Thailand 27733 T 471 471
340 Thailand 27734 T 471 471
341 Thailand 27735 C 471 471
342 Thailand 27736 A 471 471
343 Thailand 27737 C 471 471
344 Thailand 27738 A 471 471
345 Thailand 27739 C 471 471
346 Thailand 27740 T 471 471
347 Thailand 27741 C T 471 469 Leu116Leu
348 Thailand 27742 A 471 471
349 Thailand 27743 A 471 471
350 Thailand 27744 A 471 471
351 Thailand 27745 A 471 471
352 Thailand 27746 G T 471 469 Arg118Ile
353 Thailand 27747 A 471 471
354 Thailand 27748 A 471 471
355 Thailand 27749 A 471 471
356 Thailand 27750 G 470 470
357 Thailand 27751 A 470 470
358 Thailand 27752 C 470 470
359 Thailand 27753 A 470 470
360 Thailand 27754 G 470 470
361 Thailand 27755 A 470 470
362 Thailand 27756 A 470 470
363 Thailand 27757 T 470 470
364 Thailand 27758 G 470 470
365 Thailand 27759 A 470 470