National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                     1
I     25                                      
K     21                                      
L     45                         1            
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                               1      
T     30               1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Taiwan 27394 A 150 150
1 Taiwan 27395 T 150 150
2 Taiwan 27396 G 150 150
3 Taiwan 27397 A 150 150
4 Taiwan 27398 A 150 150
5 Taiwan 27399 A 150 150
6 Taiwan 27400 A 150 150
7 Taiwan 27401 T 150 150
8 Taiwan 27402 T 150 150
9 Taiwan 27403 A 150 150
10 Taiwan 27404 T 150 150
11 Taiwan 27405 T 150 150
12 Taiwan 27406 C 150 150
13 Taiwan 27407 T 150 150
14 Taiwan 27408 T 150 150
15 Taiwan 27409 T 150 150
16 Taiwan 27410 T 150 150
17 Taiwan 27411 C 150 150
18 Taiwan 27412 T 150 150
19 Taiwan 27413 T 150 150
20 Taiwan 27414 G 150 150
21 Taiwan 27415 G 150 150
22 Taiwan 27416 C 150 150
23 Taiwan 27417 A 150 150
24 Taiwan 27418 C 150 150
25 Taiwan 27419 T 150 150
26 Taiwan 27420 G 150 150
27 Taiwan 27421 A 150 150
28 Taiwan 27422 T 150 150
29 Taiwan 27423 A 150 150
30 Taiwan 27424 A 150 150
31 Taiwan 27425 C 150 150
32 Taiwan 27426 A 150 150
33 Taiwan 27427 C 150 150
34 Taiwan 27428 T 150 150
35 Taiwan 27429 C 150 150
36 Taiwan 27430 G 150 150
37 Taiwan 27431 C 150 150
38 Taiwan 27432 T 150 150
39 Taiwan 27433 A 150 150
40 Taiwan 27434 C T 150 149 Thr14Ile
41 Taiwan 27435 T 150 150
42 Taiwan 27436 T 150 150
43 Taiwan 27437 G 150 150
44 Taiwan 27438 T 150 150
45 Taiwan 27439 G 150 150
46 Taiwan 27440 A 150 150
47 Taiwan 27441 G 150 150
48 Taiwan 27442 C 150 150
49 Taiwan 27443 T 150 150
50 Taiwan 27444 T 150 150
51 Taiwan 27445 T 150 150
52 Taiwan 27446 A 150 150
53 Taiwan 27447 T 150 150
54 Taiwan 27448 C 150 150
55 Taiwan 27449 A 150 150
56 Taiwan 27450 C 150 150
57 Taiwan 27451 T 150 150
58 Taiwan 27452 A 150 150
59 Taiwan 27453 C 150 150
60 Taiwan 27454 C 150 150
61 Taiwan 27455 A 150 150
62 Taiwan 27456 A 150 150
63 Taiwan 27457 G 150 150
64 Taiwan 27458 A 150 150
65 Taiwan 27459 G 150 150
66 Taiwan 27460 T 150 150
67 Taiwan 27461 G 150 150
68 Taiwan 27462 T 150 150
69 Taiwan 27463 G 150 150
70 Taiwan 27464 T 150 150
71 Taiwan 27465 T 150 150
72 Taiwan 27466 A 150 150
73 Taiwan 27467 G 150 150
74 Taiwan 27468 A 150 150
75 Taiwan 27469 G 150 150
76 Taiwan 27470 G 150 150
77 Taiwan 27471 T 150 150
78 Taiwan 27472 A 150 150
79 Taiwan 27473 C 150 150
80 Taiwan 27474 A 150 150
81 Taiwan 27475 A 150 150
82 Taiwan 27476 C 150 150
83 Taiwan 27477 A 150 150
84 Taiwan 27478 G 150 150
85 Taiwan 27479 T 150 150
86 Taiwan 27480 A 150 150
87 Taiwan 27481 C 150 150
88 Taiwan 27482 T C 150 149 Leu30Pro
89 Taiwan 27483 T 150 150
90 Taiwan 27484 T 150 150
91 Taiwan 27485 T 150 150
92 Taiwan 27486 A 150 150
93 Taiwan 27487 A 150 150
94 Taiwan 27488 A 150 150
95 Taiwan 27489 A 150 150
96 Taiwan 27490 G 150 150
97 Taiwan 27491 A 150 150
98 Taiwan 27492 A 150 150
99 Taiwan 27493 C 150 150
100 Taiwan 27494 C 150 150
101 Taiwan 27495 T 150 150
102 Taiwan 27496 T 150 150
103 Taiwan 27497 G 150 150
104 Taiwan 27498 C 150 150
105 Taiwan 27499 T 150 150
106 Taiwan 27500 C 150 150
107 Taiwan 27501 T 150 150
108 Taiwan 27502 T 150 150
109 Taiwan 27503 C 150 150
110 Taiwan 27504 T 150 150
111 Taiwan 27505 G 150 150
112 Taiwan 27506 G 150 150
113 Taiwan 27507 A 150 150
114 Taiwan 27508 A 150 150
115 Taiwan 27509 C 150 150
116 Taiwan 27510 A 150 150
117 Taiwan 27511 T 150 150
118 Taiwan 27512 A 150 150
119 Taiwan 27513 C 150 150
120 Taiwan 27514 G 150 150
121 Taiwan 27515 A 150 150
122 Taiwan 27516 G 150 150
123 Taiwan 27517 G 150 150
124 Taiwan 27518 G 150 150
125 Taiwan 27519 C 150 150
126 Taiwan 27520 A 150 150
127 Taiwan 27521 A 150 150
128 Taiwan 27522 T 150 150
129 Taiwan 27523 T 150 150
130 Taiwan 27524 C 150 150
131 Taiwan 27525 A 150 150
132 Taiwan 27526 C 150 150
133 Taiwan 27527 C 150 150
134 Taiwan 27528 A 150 150
135 Taiwan 27529 T 150 150
136 Taiwan 27530 T 150 150
137 Taiwan 27531 T 150 150
138 Taiwan 27532 C T 150 149 His47Tyr
139 Taiwan 27533 A 150 150
140 Taiwan 27534 T 150 150
141 Taiwan 27535 C 150 150
142 Taiwan 27536 C 150 150
143 Taiwan 27537 T 150 150
144 Taiwan 27538 C 150 150
145 Taiwan 27539 T 150 150
146 Taiwan 27540 A 150 150
147 Taiwan 27541 G 150 150
148 Taiwan 27542 C 150 150
149 Taiwan 27543 T 150 150
150 Taiwan 27544 G 150 150
151 Taiwan 27545 A 150 150
152 Taiwan 27546 T 150 150
153 Taiwan 27547 A 150 150
154 Taiwan 27548 A 150 150
155 Taiwan 27549 C 150 150
156 Taiwan 27550 A 150 150
157 Taiwan 27551 A 150 150
158 Taiwan 27552 A 150 150
159 Taiwan 27553 T 150 150
160 Taiwan 27554 T 150 150
161 Taiwan 27555 T 150 150
162 Taiwan 27556 G 150 150
163 Taiwan 27557 C 150 150
164 Taiwan 27558 A 150 150
165 Taiwan 27559 C 150 150
166 Taiwan 27560 T 150 150
167 Taiwan 27561 G 150 150
168 Taiwan 27562 A 150 150
169 Taiwan 27563 C 150 150
170 Taiwan 27564 T 150 150
171 Taiwan 27565 T 150 150
172 Taiwan 27566 G 150 150
173 Taiwan 27567 C 150 150
174 Taiwan 27568 T 150 150
175 Taiwan 27569 T 150 150
176 Taiwan 27570 T 150 150
177 Taiwan 27571 A 150 150
178 Taiwan 27572 G 150 150
179 Taiwan 27573 C T 150 149 Ser60Ser
180 Taiwan 27574 A 150 150
181 Taiwan 27575 C 150 150
182 Taiwan 27576 T 150 150
183 Taiwan 27577 C 150 150
184 Taiwan 27578 A 150 150
185 Taiwan 27579 A 150 150
186 Taiwan 27580 T 150 150
187 Taiwan 27581 T 150 150
188 Taiwan 27582 T 150 150
189 Taiwan 27583 G 150 150
190 Taiwan 27584 C 150 150
191 Taiwan 27585 T 150 150
192 Taiwan 27586 T 150 150
193 Taiwan 27587 T 150 150
194 Taiwan 27588 T 150 150
195 Taiwan 27589 G 150 150
196 Taiwan 27590 C 150 150
197 Taiwan 27591 T 150 150
198 Taiwan 27592 T 150 150
199 Taiwan 27593 G 150 150
200 Taiwan 27594 T 150 150
201 Taiwan 27595 C 150 150
202 Taiwan 27596 C 150 150
203 Taiwan 27597 T 150 150
204 Taiwan 27598 G 150 150
205 Taiwan 27599 A 150 150
206 Taiwan 27600 C 150 150
207 Taiwan 27601 G 150 150
208 Taiwan 27602 G 150 150
209 Taiwan 27603 C 150 150
210 Taiwan 27604 G 150 150
211 Taiwan 27605 T 150 150
212 Taiwan 27606 A 150 150
213 Taiwan 27607 A 150 150
214 Taiwan 27608 A 150 150
215 Taiwan 27609 A 150 150
216 Taiwan 27610 C 150 150
217 Taiwan 27611 A 150 150
218 Taiwan 27612 C 150 150
219 Taiwan 27613 G 150 150
220 Taiwan 27614 T 150 150
221 Taiwan 27615 C 150 150
222 Taiwan 27616 T 150 150
223 Taiwan 27617 A 150 150
224 Taiwan 27618 T 150 150
225 Taiwan 27619 C 150 150
226 Taiwan 27620 A 150 150
227 Taiwan 27621 G 150 150
228 Taiwan 27622 T 150 150
229 Taiwan 27623 T 150 150
230 Taiwan 27624 A 150 150
231 Taiwan 27625 C 150 150
232 Taiwan 27626 G 150 150
233 Taiwan 27627 T 150 150
234 Taiwan 27628 G 150 150
235 Taiwan 27629 C 150 150
236 Taiwan 27630 C 150 150
237 Taiwan 27631 A 150 150
238 Taiwan 27632 G 150 150
239 Taiwan 27633 A 150 150
240 Taiwan 27634 T 150 150
241 Taiwan 27635 C 150 150
242 Taiwan 27636 A 150 150
243 Taiwan 27637 G 150 150
244 Taiwan 27638 T 150 150
245 Taiwan 27639 T 150 150
246 Taiwan 27640 T 150 150
247 Taiwan 27641 C 150 150
248 Taiwan 27642 A 150 150
249 Taiwan 27643 C 150 150
250 Taiwan 27644 C 150 150
251 Taiwan 27645 T 150 150
252 Taiwan 27646 A 150 150
253 Taiwan 27647 A 150 150
254 Taiwan 27648 A 150 150
255 Taiwan 27649 C 150 150
256 Taiwan 27650 T 150 150
257 Taiwan 27651 G 150 150
258 Taiwan 27652 T 150 150
259 Taiwan 27653 T 150 150
260 Taiwan 27654 C 150 150
261 Taiwan 27655 A 150 150
262 Taiwan 27656 T 150 150
263 Taiwan 27657 C 150 150
264 Taiwan 27658 A 150 150
265 Taiwan 27659 G 150 150
266 Taiwan 27660 A 150 150
267 Taiwan 27661 C 150 150
268 Taiwan 27662 A 150 150
269 Taiwan 27663 A 150 150
270 Taiwan 27664 G 150 150
271 Taiwan 27665 A 150 150
272 Taiwan 27666 G 150 150
273 Taiwan 27667 G 150 150
274 Taiwan 27668 A 150 150
275 Taiwan 27669 A 150 150
276 Taiwan 27670 G 150 150
277 Taiwan 27671 T 150 150
278 Taiwan 27672 T 150 150
279 Taiwan 27673 C 150 150
280 Taiwan 27674 A 150 150
281 Taiwan 27675 A 150 150
282 Taiwan 27676 G 150 150
283 Taiwan 27677 A 150 150
284 Taiwan 27678 A 150 150
285 Taiwan 27679 C 150 150
286 Taiwan 27680 T 150 150
287 Taiwan 27681 T 150 150
288 Taiwan 27682 T 150 150
289 Taiwan 27683 A 150 150
290 Taiwan 27684 C 150 150
291 Taiwan 27685 T 150 150
292 Taiwan 27686 C 150 150
293 Taiwan 27687 T 150 150
294 Taiwan 27688 C 150 150
295 Taiwan 27689 C 150 150
296 Taiwan 27690 A 150 150
297 Taiwan 27691 A 150 150
298 Taiwan 27692 T 150 150
299 Taiwan 27693 T 150 150
300 Taiwan 27694 T 150 150
301 Taiwan 27695 T 150 150
302 Taiwan 27696 T 150 150
303 Taiwan 27697 C 150 150
304 Taiwan 27698 T 150 150
305 Taiwan 27699 T 150 150
306 Taiwan 27700 A 150 150
307 Taiwan 27701 T 150 150
308 Taiwan 27702 T 150 150
309 Taiwan 27703 G 150 150
310 Taiwan 27704 T 150 150
311 Taiwan 27705 T 150 150
312 Taiwan 27706 G 150 150
313 Taiwan 27707 C 150 150
314 Taiwan 27708 G 150 150
315 Taiwan 27709 G 150 150
316 Taiwan 27710 C 150 150
317 Taiwan 27711 A 150 150
318 Taiwan 27712 A 150 150
319 Taiwan 27713 T 150 150
320 Taiwan 27714 A 150 150
321 Taiwan 27715 G 150 150
322 Taiwan 27716 T 150 150
323 Taiwan 27717 G 150 150
324 Taiwan 27718 T 150 150
325 Taiwan 27719 T 150 150
326 Taiwan 27720 T 150 150
327 Taiwan 27721 A 150 150
328 Taiwan 27722 T 150 150
329 Taiwan 27723 A 150 150
330 Taiwan 27724 A 150 150
331 Taiwan 27725 C 150 150
332 Taiwan 27726 A 150 150
333 Taiwan 27727 C 150 150
334 Taiwan 27728 T 150 150
335 Taiwan 27729 T 150 150
336 Taiwan 27730 T 150 150
337 Taiwan 27731 G 150 150
338 Taiwan 27732 C 150 150
339 Taiwan 27733 T 150 150
340 Taiwan 27734 T 150 150
341 Taiwan 27735 C 150 150
342 Taiwan 27736 A 150 150
343 Taiwan 27737 C 150 150
344 Taiwan 27738 A 150 150
345 Taiwan 27739 C 150 150
346 Taiwan 27740 T 150 150
347 Taiwan 27741 C 150 150
348 Taiwan 27742 A 150 150
349 Taiwan 27743 A 150 150
350 Taiwan 27744 A 150 150
351 Taiwan 27745 A 150 150
352 Taiwan 27746 G 150 150
353 Taiwan 27747 A 150 150
354 Taiwan 27748 A 150 150
355 Taiwan 27749 A 150 150
356 Taiwan 27750 G 150 150
357 Taiwan 27751 A 150 150
358 Taiwan 27752 C 150 150
359 Taiwan 27753 A 150 150
360 Taiwan 27754 G 150 150
361 Taiwan 27755 A 150 150
362 Taiwan 27756 A 150 150
363 Taiwan 27757 T 150 150
364 Taiwan 27758 G 150 150
365 Taiwan 27759 A 150 150