National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     369                                      
?                                            
A     27 3                             4 1 4  
C     18   2                                  
D     6     1     1                         2
E 1   24     1 3         1                 1  
F     30         2         4           2   2  
G     12     1     1                   3   1  
H     9             1         1   1         2
I     25                   1             4 2  
K     21                 1     1              
L     44         5     2   5           1   1  
M     6                                      
N     6                       1              
P     18                   5           4      
Q 2   15             2   1         2          
R     15   1       2   2 1           1        
S     21         1     1   3     1     3      
T     30 1             8             1 2 3    
V     24         3     1                   4  
Y 1   15   1         1                       4

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Switzerland 27394 A 7988 7988
1 Switzerland 27395 T 7988 7987
2 Switzerland 27396 G 7988 7983
3 Switzerland 27397 A 7988 7987
4 Switzerland 27398 A 7988 7987
5 Switzerland 27399 A 7988 7987
6 Switzerland 27400 A C 7988 7987 Ile3Leu
7 Switzerland 27401 T C 7988 7987 Ile3Thr
8 Switzerland 27402 T 7988 7988
9 Switzerland 27403 A 7988 7987
10 Switzerland 27404 T C 7988 7987 Ile4Thr
11 Switzerland 27405 T 7988 7988
12 Switzerland 27406 C T,A 7988 7977 Leu5Phe-p.Leu5Ile
13 Switzerland 27407 T 7988 7986
14 Switzerland 27408 T 7988 7986
15 Switzerland 27409 T C,G 7988 7971 Phe6Leu-p.Phe6Val
16 Switzerland 27410 T 7988 7987
17 Switzerland 27411 C 7988 7987
18 Switzerland 27412 T 7988 7988
19 Switzerland 27413 T 7988 7988
20 Switzerland 27414 G 7988 7988
21 Switzerland 27415 G 7988 7987
22 Switzerland 27416 C T 7988 7986 Ala8Val
23 Switzerland 27417 A 7988 7988
24 Switzerland 27418 C 7988 7986
25 Switzerland 27419 T 7988 7988
26 Switzerland 27420 G 7988 7987
27 Switzerland 27421 A G 7988 7980 Ile10Val
28 Switzerland 27422 T 7988 7987
29 Switzerland 27423 A 7988 7988
30 Switzerland 27424 A G 7988 7986 Thr11Ala
31 Switzerland 27425 C T 7988 7985 Thr11Ile
32 Switzerland 27426 A G 7988 7982 Thr11Thr
33 Switzerland 27427 C 7988 7988
34 Switzerland 27428 T 7988 7988
35 Switzerland 27429 C T 7988 7974 Leu12Leu
36 Switzerland 27430 G A 7988 7985 Ala13Thr
37 Switzerland 27431 C T 7988 7987 Ala13Val
38 Switzerland 27432 T 7988 7985
39 Switzerland 27433 A 7988 7987
40 Switzerland 27434 C T 7989 7224 Thr14Ile
41 Switzerland 27435 T 7989 7987
42 Switzerland 27436 T 7989 7989
43 Switzerland 27437 G 7989 7989
44 Switzerland 27438 T C 7989 7987 Cys15Cys
45 Switzerland 27439 G 7989 7989
46 Switzerland 27440 A 7989 7988
47 Switzerland 27441 G 7989 7988
48 Switzerland 27442 C T 7989 7984 Leu17Phe
49 Switzerland 27443 T 7989 7988
50 Switzerland 27444 T 7989 7988
51 Switzerland 27445 T 7989 7988
52 Switzerland 27446 A 7991 7988
53 Switzerland 27447 T 8004 8002
54 Switzerland 27448 C 8005 8004
55 Switzerland 27449 A 8006 8005
56 Switzerland 27450 C 8006 8005
57 Switzerland 27451 T 8006 8003
58 Switzerland 27452 A 8006 8005
59 Switzerland 27453 C T 8006 8003 Tyr20Tyr
60 Switzerland 27454 C 8006 8005
61 Switzerland 27455 A 8006 8005
62 Switzerland 27456 A G 8006 8003 Gln21Gln
63 Switzerland 27457 G 8007 8006
64 Switzerland 27458 A 8007 8007
65 Switzerland 27459 G 8007 8007
66 Switzerland 27460 T 8006 8005
67 Switzerland 27461 G 8006 8006
68 Switzerland 27462 T 8006 8006
69 Switzerland 27463 G T 8006 7989 Val24Phe
70 Switzerland 27464 T 8006 8006
71 Switzerland 27465 T 8006 8005
72 Switzerland 27466 A 8006 8006
73 Switzerland 27467 G A 8006 8000 Arg25Lys
74 Switzerland 27468 A 8006 8005
75 Switzerland 27469 G A 8006 8003 Gly26Ser
76 Switzerland 27470 G A 8005 8002 Gly26Asp
77 Switzerland 27471 T 8005 8004
78 Switzerland 27472 A T 8004 8002 Thr27Ser
79 Switzerland 27473 C 8004 8004
80 Switzerland 27474 A C 8004 8002 Thr27Thr
81 Switzerland 27475 A 8004 8003
82 Switzerland 27476 C T 8004 7998 Thr28Ile
83 Switzerland 27477 A 8002 8001
84 Switzerland 27478 G 8002 8001
85 Switzerland 27479 T 8002 8001
86 Switzerland 27480 A 8002 8002
87 Switzerland 27481 C 8002 7998
88 Switzerland 27482 T 8000 8000
89 Switzerland 27483 T 8000 8000
90 Switzerland 27484 T C 8001 7989 Leu31Leu
91 Switzerland 27485 T 8001 8001
92 Switzerland 27486 A 8001 8001
93 Switzerland 27487 A 8001 8001
94 Switzerland 27488 A 8001 8001
95 Switzerland 27489 A G 8000 7995 Lys32Lys
96 Switzerland 27490 G 8000 7995
97 Switzerland 27491 A 7999 7998
98 Switzerland 27492 A G 7999 7997 Glu33Glu
99 Switzerland 27493 C T 7999 7988 Pro34Ser
100 Switzerland 27494 C T 7999 7993 Pro34Leu
101 Switzerland 27495 T 7999 7998
102 Switzerland 27496 T 7999 7997
103 Switzerland 27497 G 7999 7999
104 Switzerland 27498 C T 7999 7995 Cys35Cys
105 Switzerland 27499 T 7999 7998
106 Switzerland 27500 C 7998 7996
107 Switzerland 27501 T 7997 7996
108 Switzerland 27502 T 7997 7997
109 Switzerland 27503 C 7997 7995
110 Switzerland 27504 T C 7997 7996 Ser37Ser
111 Switzerland 27505 G 7997 7993
112 Switzerland 27506 G T 7997 7990 Gly38Val
113 Switzerland 27507 A 7997 7997
114 Switzerland 27508 A 7996 7996
115 Switzerland 27509 C T,G 7993 7984 Thr39Ile-p.Thr39Arg
116 Switzerland 27510 A 7993 7992
117 Switzerland 27511 T 7994 7993
118 Switzerland 27512 A 7993 7993
119 Switzerland 27513 C T,G 7993 7949 Tyr40*-p.Tyr40Tyr
120 Switzerland 27514 G A 7992 7989 Glu41Lys
121 Switzerland 27515 A 7986 7986
122 Switzerland 27516 G A 7986 7983 Glu41Glu
123 Switzerland 27517 G A 7985 7983 Gly42Ser
124 Switzerland 27518 G 7994 7993
125 Switzerland 27519 C 7991 7988
126 Switzerland 27520 A 7973 7972
127 Switzerland 27521 A 7973 7972
128 Switzerland 27522 T 7973 7972
129 Switzerland 27523 T 7972 7970
130 Switzerland 27524 C T 7972 7968 Ser44Leu
131 Switzerland 27525 A 7958 7955
132 Switzerland 27526 C 7958 7956
133 Switzerland 27527 C T 7949 7934 Pro45Leu
134 Switzerland 27528 A 7933 7906
135 Switzerland 27529 T 7927 7899
136 Switzerland 27530 T 7927 7900
137 Switzerland 27531 T 7918 7891
138 Switzerland 27532 C T,A 7918 7838 His47Tyr-p.His47Asn
139 Switzerland 27533 A 7910 7877
140 Switzerland 27534 T C,A 7525 7467 His47Gln-p.His47His
141 Switzerland 27535 C T 7464 7424 Pro48Ser
142 Switzerland 27536 C 7436 7397
143 Switzerland 27537 T 7427 7388
144 Switzerland 27538 C 7426 7388
145 Switzerland 27539 T 7425 7388
146 Switzerland 27540 A 7425 7387
147 Switzerland 27541 G T 7424 7385 Ala50Ser
148 Switzerland 27542 C 7424 7387
149 Switzerland 27543 T A 7422 7386 Ala50Ala
150 Switzerland 27544 G T 7422 7381 Asp51Tyr
151 Switzerland 27545 A 7422 7382
152 Switzerland 27546 T 7421 7383
153 Switzerland 27547 A 7420 7381
154 Switzerland 27548 A 7420 7382
155 Switzerland 27549 C T 7419 7369 Asn52Asn
156 Switzerland 27550 A 7419 7379
157 Switzerland 27551 A 7418 7379
158 Switzerland 27552 A 7417 7381
159 Switzerland 27553 T 7417 7381
160 Switzerland 27554 T 7416 7376
161 Switzerland 27555 T 7415 7377
162 Switzerland 27556 G T 7415 7373 Ala55Ser
163 Switzerland 27557 C 7415 7380
164 Switzerland 27558 A 7415 7380
165 Switzerland 27559 C 7414 7371
166 Switzerland 27560 T 7414 7372
167 Switzerland 27561 G T 7414 7374 Leu56Leu
168 Switzerland 27562 A 7413 7381
169 Switzerland 27563 C T 7413 7381 Thr57Ile
170 Switzerland 27564 T 7413 7382
171 Switzerland 27565 T 7413 7383
172 Switzerland 27566 G 7414 7387
173 Switzerland 27567 C 7414 7386
174 Switzerland 27568 T 7414 7392
175 Switzerland 27569 T C 7414 7391 Phe59Ser
176 Switzerland 27570 T 7414 7392
177 Switzerland 27571 A 7414 7390
178 Switzerland 27572 G T 7413 7384 Ser60Ile
179 Switzerland 27573 C 7413 7389
180 Switzerland 27574 A 7410 7386
181 Switzerland 27575 C T,G 7410 7365 Thr61Ile-p.Thr61Ser
182 Switzerland 27576 T C 7408 7382 Thr61Thr
183 Switzerland 27577 C T 7407 7372 Gln62*
184 Switzerland 27578 A 7407 7388
185 Switzerland 27579 A T,G 7407 7388 Gln62His-p.Gln62Gln
186 Switzerland 27580 T C 7405 7384 Phe63Leu
187 Switzerland 27581 T 7405 7384
188 Switzerland 27582 T 7405 7385
189 Switzerland 27583 G 7405 7387
190 Switzerland 27584 C 7405 7386
191 Switzerland 27585 T 7405 7385
192 Switzerland 27586 T 7405 7385
193 Switzerland 27587 T 7404 7385
194 Switzerland 27588 T 7405 7385
195 Switzerland 27589 G 7405 7387
196 Switzerland 27590 C 7405 7390
197 Switzerland 27591 T G 7405 7390 Ala66Ala
198 Switzerland 27592 T 7407 7390
199 Switzerland 27593 G 7407 7389
200 Switzerland 27594 T 7407 7390
201 Switzerland 27595 C 7407 7389
202 Switzerland 27596 C T 7407 7386 Pro68Leu
203 Switzerland 27597 T 7407 7387
204 Switzerland 27598 G T 7407 7386 Asp69Tyr
205 Switzerland 27599 A G 7408 7387 Asp69Gly
206 Switzerland 27600 C T 7408 7380 Asp69Asp
207 Switzerland 27601 G A 7408 7387 Gly70Ser
208 Switzerland 27602 G 7408 7393
209 Switzerland 27603 C T 7408 7383 Gly70Gly
210 Switzerland 27604 G 7414 7405
211 Switzerland 27605 T 7414 7405
212 Switzerland 27606 A G 7414 7403 Val71Val
213 Switzerland 27607 A 7414 7409
214 Switzerland 27608 A 7414 7405
215 Switzerland 27609 A 7414 7401
216 Switzerland 27610 C T 7413 7398 His73Tyr
217 Switzerland 27611 A 7413 7403
218 Switzerland 27612 C 7413 7405
219 Switzerland 27613 G A 7413 7405 Val74Ile
220 Switzerland 27614 T 7413 7404
221 Switzerland 27615 C T 7413 7404 Val74Val
222 Switzerland 27616 T C 7413 7402 Tyr75His
223 Switzerland 27617 A 7413 7401
224 Switzerland 27618 T C 7413 7399 Tyr75Tyr
225 Switzerland 27619 C 7412 7395
226 Switzerland 27620 A 7412 7399
227 Switzerland 27621 G 7412 7392
228 Switzerland 27622 T C 7412 7385 Leu77Leu
229 Switzerland 27623 T C 7412 7391 Leu77Ser
230 Switzerland 27624 A 7412 7388
231 Switzerland 27625 C G,T 7412 7378 Arg78Gly-p.Arg78Cys
232 Switzerland 27626 G 7412 7388
233 Switzerland 27627 T 7412 7388
234 Switzerland 27628 G T 7412 7386 Ala79Ser
235 Switzerland 27629 C T 7412 7387 Ala79Val
236 Switzerland 27630 C T 7412 7375 Ala79Ala
237 Switzerland 27631 A G 7412 7390 Arg80Gly
238 Switzerland 27632 G T 7412 7314 Arg80Ile
239 Switzerland 27633 A G 7412 7389 Arg80Arg
240 Switzerland 27634 T C 7411 7388 Ser81Pro
241 Switzerland 27635 C T 7411 7389 Ser81Leu
242 Switzerland 27636 A T 7411 7382 Ser81Ser
243 Switzerland 27637 G 7410 7395
244 Switzerland 27638 T 7410 7396
245 Switzerland 27639 T C 7410 7391 Val82Val
246 Switzerland 27640 T 7410 7398
247 Switzerland 27641 C T 7410 7398 Ser83Leu
248 Switzerland 27642 A 7410 7389
249 Switzerland 27643 C T 7410 7389 Pro84Ser
250 Switzerland 27644 C T 7410 7396 Pro84Leu
251 Switzerland 27645 T 7410 7400
252 Switzerland 27646 A 7410 7399
253 Switzerland 27647 A 7410 7398
254 Switzerland 27648 A 7410 7397
255 Switzerland 27649 C 7410 7393
256 Switzerland 27650 T 7410 7398
257 Switzerland 27651 G 7410 7399
258 Switzerland 27652 T 7410 7399
259 Switzerland 27653 T C 7410 7395 Phe87Ser
260 Switzerland 27654 C T,G 7410 7388 Phe87Leu-p.Phe87Phe
261 Switzerland 27655 A G 7410 7396 Ile88Val
262 Switzerland 27656 T C 7410 7393 Ile88Thr
263 Switzerland 27657 C 7410 7395
264 Switzerland 27658 A 7410 7399
265 Switzerland 27659 G T 7410 7394 Arg89Ile
266 Switzerland 27660 A 7410 7402
267 Switzerland 27661 C 7410 7396
268 Switzerland 27662 A 7410 7407
269 Switzerland 27663 A 7410 7406
270 Switzerland 27664 G T 7410 7402 Glu91*
271 Switzerland 27665 A 7410 7403
272 Switzerland 27666 G T,A 7410 7401 Glu91Asp-p.Glu91Glu
273 Switzerland 27667 G 7410 7406
274 Switzerland 27668 A 7410 7403
275 Switzerland 27669 A 7410 7392
276 Switzerland 27670 G T 7410 7381 Val93Phe
277 Switzerland 27671 T 7410 7404
278 Switzerland 27672 T 7410 7399
279 Switzerland 27673 C T,A 7410 7400 Gln94*-p.Gln94Lys
280 Switzerland 27674 A 7409 7401
281 Switzerland 27675 A C 7409 7405 Gln94His
282 Switzerland 27676 G 7409 7406
283 Switzerland 27677 A 7408 7405
284 Switzerland 27678 A 7408 7403
285 Switzerland 27679 C T 7408 7403 Leu96Phe
286 Switzerland 27680 T 7408 7402
287 Switzerland 27681 T 7408 7402
288 Switzerland 27682 T 7408 7404
289 Switzerland 27683 A G 7408 7405 Tyr97Cys
290 Switzerland 27684 C T 7408 7402 Tyr97Tyr
291 Switzerland 27685 T 7408 7403
292 Switzerland 27686 C T 7408 7398 Ser98Phe
293 Switzerland 27687 T C 7408 7401 Ser98Ser
294 Switzerland 27688 C T 7408 7394 Pro99Ser
295 Switzerland 27689 C T 7408 7398 Pro99Leu
296 Switzerland 27690 A 7408 7402
297 Switzerland 27691 A 7407 7400
298 Switzerland 27692 T 7407 7404
299 Switzerland 27693 T 7406 7401
300 Switzerland 27694 T 7410 7407
301 Switzerland 27695 T 7410 7405
302 Switzerland 27696 T 7406 7402
303 Switzerland 27697 C T 7405 7390 Leu102Phe
304 Switzerland 27698 T 7397 7394
305 Switzerland 27699 T 7396 7392
306 Switzerland 27700 A 7396 7389
307 Switzerland 27701 T 7396 7392
308 Switzerland 27702 T 7396 7393
309 Switzerland 27703 G T 7396 7377 Val104Phe
310 Switzerland 27704 T 7396 7394
311 Switzerland 27705 T A 7396 7392 Val104Val
312 Switzerland 27706 G T 7396 7389 Ala105Ser
313 Switzerland 27707 C T 7395 7388 Ala105Val
314 Switzerland 27708 G 7395 7391
315 Switzerland 27709 G 7395 7390
316 Switzerland 27710 C 7393 7391
317 Switzerland 27711 A 7393 7388
318 Switzerland 27712 A 7392 7390
319 Switzerland 27713 T 7392 7383
320 Switzerland 27714 A 7392 7391
321 Switzerland 27715 G 7392 7389
322 Switzerland 27716 T 7391 7384
323 Switzerland 27717 G 7391 7389
324 Switzerland 27718 T 7388 7386
325 Switzerland 27719 T 7389 7384
326 Switzerland 27720 T 7389 7376
327 Switzerland 27721 A 7389 7388
328 Switzerland 27722 T C 7389 7386 Ile110Thr
329 Switzerland 27723 A 7388 7386
330 Switzerland 27724 A 7387 7386
331 Switzerland 27725 C 7386 7385
332 Switzerland 27726 A 7381 7379
333 Switzerland 27727 C 7381 7374
334 Switzerland 27728 T 7379 7373
335 Switzerland 27729 T 7379 7376
336 Switzerland 27730 T 7377 7371
337 Switzerland 27731 G 7375 7374
338 Switzerland 27732 C 7374 7372
339 Switzerland 27733 T G 7373 7369 Phe114Val
340 Switzerland 27734 T 7373 7368
341 Switzerland 27735 C T,A 7373 7365 Phe114Leu-p.Phe114Phe
342 Switzerland 27736 A 7370 7365
343 Switzerland 27737 C T 7370 7362 Thr115Ile
344 Switzerland 27738 A 7368 7363
345 Switzerland 27739 C A,T,G 7368 7354 Leu116Phe-p.Leu116Val
346 Switzerland 27740 T 7368 7363
347 Switzerland 27741 C T 7368 7344 Leu116Leu
348 Switzerland 27742 A 7368 7368
349 Switzerland 27743 A 7366 7364
350 Switzerland 27744 A 7363 7362
351 Switzerland 27745 A 7362 7357
352 Switzerland 27746 G 7361 7358
353 Switzerland 27747 A 7361 7357
354 Switzerland 27748 A 7360 7359
355 Switzerland 27749 A 7356 7356
356 Switzerland 27750 G T 7355 7351 Lys119Asn
357 Switzerland 27751 A 7354 7352
358 Switzerland 27752 C T 7351 7337 Thr120Ile
359 Switzerland 27753 A 7350 7350
360 Switzerland 27754 G 7350 7347
361 Switzerland 27755 A T 7350 7178 Glu121Val
362 Switzerland 27756 A 7350 7349
363 Switzerland 27757 T 7350 7348
364 Switzerland 27758 G 7349 7346
365 Switzerland 27759 A 7347 7347