National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1                             1   2  
C     18                                      
D     6                                      
E 1   24                           1          
F     30                                      
G     12                                   1  
H     9             1                       1
I     25                                      
K     21                                      
L     45         2         2                  
M     6                                      
N     6                                      
P     18                             1        
Q     15                   1                  
R     15             1                        
S     21         1         1                 1
T     30 1             3       1              
V     24         2     1                      
Y     15             1                       4

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 27394 A 1388 1388
1 Sweden 27395 T 1388 1388
2 Sweden 27396 G 1388 1388
3 Sweden 27397 A 1388 1388
4 Sweden 27398 A 1388 1388
5 Sweden 27399 A 1388 1388
6 Sweden 27400 A 1388 1388
7 Sweden 27401 T 1388 1388
8 Sweden 27402 T 1388 1388
9 Sweden 27403 A 1388 1388
10 Sweden 27404 T 1388 1388
11 Sweden 27405 T 1388 1388
12 Sweden 27406 C 1388 1388
13 Sweden 27407 T 1388 1388
14 Sweden 27408 T 1388 1388
15 Sweden 27409 T 1388 1388
16 Sweden 27410 T 1388 1388
17 Sweden 27411 C 1388 1388
18 Sweden 27412 T 1388 1388
19 Sweden 27413 T 1388 1388
20 Sweden 27414 G 1388 1388
21 Sweden 27415 G 1388 1388
22 Sweden 27416 C 1388 1388
23 Sweden 27417 A 1388 1388
24 Sweden 27418 C 1388 1388
25 Sweden 27419 T 1388 1388
26 Sweden 27420 G 1388 1388
27 Sweden 27421 A 1388 1388
28 Sweden 27422 T 1388 1388
29 Sweden 27423 A 1388 1388
30 Sweden 27424 A 1388 1388
31 Sweden 27425 C T 1388 1384 Thr11Ile
32 Sweden 27426 A 1388 1388
33 Sweden 27427 C 1388 1388
34 Sweden 27428 T 1388 1388
35 Sweden 27429 C 1388 1388
36 Sweden 27430 G 1388 1388
37 Sweden 27431 C 1388 1388
38 Sweden 27432 T 1388 1388
39 Sweden 27433 A 1388 1388
40 Sweden 27434 C T,A 1388 1358 Thr14Ile-p.Thr14Asn
41 Sweden 27435 T 1388 1388
42 Sweden 27436 T 1388 1388
43 Sweden 27437 G 1388 1388
44 Sweden 27438 T 1388 1388
45 Sweden 27439 G 1388 1388
46 Sweden 27440 A 1388 1388
47 Sweden 27441 G 1388 1388
48 Sweden 27442 C 1388 1388
49 Sweden 27443 T 1388 1388
50 Sweden 27444 T 1388 1388
51 Sweden 27445 T 1388 1388
52 Sweden 27446 A 1388 1388
53 Sweden 27447 T 1388 1388
54 Sweden 27448 C 1388 1388
55 Sweden 27449 A 1388 1388
56 Sweden 27450 C T 1388 1387 His19His
57 Sweden 27451 T C 1388 1387 Tyr20His
58 Sweden 27452 A 1388 1388
59 Sweden 27453 C T 1388 1387 Tyr20Tyr
60 Sweden 27454 C 1388 1388
61 Sweden 27455 A 1388 1388
62 Sweden 27456 A 1388 1388
63 Sweden 27457 G 1388 1388
64 Sweden 27458 A 1388 1388
65 Sweden 27459 G 1388 1388
66 Sweden 27460 T 1388 1388
67 Sweden 27461 G 1388 1388
68 Sweden 27462 T 1388 1388
69 Sweden 27463 G T 1388 1387 Val24Phe
70 Sweden 27464 T 1388 1388
71 Sweden 27465 T 1388 1388
72 Sweden 27466 A 1388 1388
73 Sweden 27467 G 1388 1388
74 Sweden 27468 A 1388 1388
75 Sweden 27469 G 1388 1388
76 Sweden 27470 G 1388 1388
77 Sweden 27471 T 1388 1388
78 Sweden 27472 A 1388 1388
79 Sweden 27473 C 1388 1388
80 Sweden 27474 A 1388 1388
81 Sweden 27475 A 1388 1388
82 Sweden 27476 C 1388 1388
83 Sweden 27477 A 1388 1388
84 Sweden 27478 G 1388 1388
85 Sweden 27479 T 1388 1388
86 Sweden 27480 A 1388 1388
87 Sweden 27481 C 1388 1388
88 Sweden 27482 T 1388 1388
89 Sweden 27483 T 1388 1388
90 Sweden 27484 T 1388 1388
91 Sweden 27485 T 1388 1388
92 Sweden 27486 A 1388 1388
93 Sweden 27487 A 1388 1388
94 Sweden 27488 A 1388 1388
95 Sweden 27489 A 1388 1388
96 Sweden 27490 G 1388 1388
97 Sweden 27491 A 1388 1388
98 Sweden 27492 A 1388 1388
99 Sweden 27493 C 1388 1388
100 Sweden 27494 C 1388 1388
101 Sweden 27495 T 1388 1388
102 Sweden 27496 T 1388 1388
103 Sweden 27497 G 1388 1388
104 Sweden 27498 C 1388 1388
105 Sweden 27499 T 1388 1388
106 Sweden 27500 C 1388 1388
107 Sweden 27501 T 1388 1388
108 Sweden 27502 T 1388 1388
109 Sweden 27503 C T 1388 1387 Ser37Phe
110 Sweden 27504 T 1388 1388
111 Sweden 27505 G 1388 1388
112 Sweden 27506 G T 1388 1387 Gly38Val
113 Sweden 27507 A 1388 1388
114 Sweden 27508 A 1388 1388
115 Sweden 27509 C T 1388 1383 Thr39Ile
116 Sweden 27510 A 1388 1388
117 Sweden 27511 T 1388 1388
118 Sweden 27512 A 1387 1387
119 Sweden 27513 C T 1387 1374 Tyr40Tyr
120 Sweden 27514 G 1387 1387
121 Sweden 27515 A 1387 1387
122 Sweden 27516 G 1387 1387
123 Sweden 27517 G 1387 1387
124 Sweden 27518 G 1387 1387
125 Sweden 27519 C 1387 1387
126 Sweden 27520 A 1387 1387
127 Sweden 27521 A 1387 1387
128 Sweden 27522 T 1387 1387
129 Sweden 27523 T 1387 1387
130 Sweden 27524 C 1387 1387
131 Sweden 27525 A 1387 1387
132 Sweden 27526 C 1387 1387
133 Sweden 27527 C G 1387 1360 Pro45Arg
134 Sweden 27528 A 1387 1387
135 Sweden 27529 T 1387 1387
136 Sweden 27530 T 1387 1387
137 Sweden 27531 T 1387 1387
138 Sweden 27532 C T 1387 1386 His47Tyr
139 Sweden 27533 A 1387 1387
140 Sweden 27534 T 1387 1387
141 Sweden 27535 C 1387 1387
142 Sweden 27536 C 1387 1387
143 Sweden 27537 T 1387 1387
144 Sweden 27538 C T 1387 1386 Leu49Leu
145 Sweden 27539 T 1387 1387
146 Sweden 27540 A 1387 1387
147 Sweden 27541 G 1387 1387
148 Sweden 27542 C 1387 1387
149 Sweden 27543 T 1387 1387
150 Sweden 27544 G 1387 1387
151 Sweden 27545 A 1387 1387
152 Sweden 27546 T 1387 1387
153 Sweden 27547 A 1387 1387
154 Sweden 27548 A 1387 1387
155 Sweden 27549 C 1387 1387
156 Sweden 27550 A 1387 1387
157 Sweden 27551 A 1387 1387
158 Sweden 27552 A 1387 1387
159 Sweden 27553 T 1387 1387
160 Sweden 27554 T 1387 1387
161 Sweden 27555 T 1387 1387
162 Sweden 27556 G 1387 1387
163 Sweden 27557 C 1387 1387
164 Sweden 27558 A 1387 1387
165 Sweden 27559 C T 1387 1386 Leu56Leu
166 Sweden 27560 T 1387 1387
167 Sweden 27561 G 1387 1387
168 Sweden 27562 A 1387 1387
169 Sweden 27563 C 1387 1387
170 Sweden 27564 T 1387 1387
171 Sweden 27565 T 1387 1387
172 Sweden 27566 G 1387 1387
173 Sweden 27567 C 1387 1387
174 Sweden 27568 T 1387 1387
175 Sweden 27569 T 1387 1387
176 Sweden 27570 T 1387 1387
177 Sweden 27571 A 1387 1387
178 Sweden 27572 G 1387 1387
179 Sweden 27573 C 1387 1387
180 Sweden 27574 A 1387 1387
181 Sweden 27575 C 1387 1387
182 Sweden 27576 T 1387 1387
183 Sweden 27577 C 1387 1387
184 Sweden 27578 A 1387 1387
185 Sweden 27579 A 1387 1387
186 Sweden 27580 T 1387 1387
187 Sweden 27581 T 1387 1387
188 Sweden 27582 T 1387 1387
189 Sweden 27583 G 1387 1387
190 Sweden 27584 C 1387 1387
191 Sweden 27585 T 1387 1387
192 Sweden 27586 T 1387 1387
193 Sweden 27587 T 1387 1387
194 Sweden 27588 T 1387 1387
195 Sweden 27589 G 1387 1387
196 Sweden 27590 C 1387 1387
197 Sweden 27591 T 1387 1387
198 Sweden 27592 T 1387 1387
199 Sweden 27593 G 1387 1387
200 Sweden 27594 T 1387 1387
201 Sweden 27595 C 1387 1387
202 Sweden 27596 C 1387 1387
203 Sweden 27597 T 1387 1387
204 Sweden 27598 G 1387 1387
205 Sweden 27599 A 1387 1387
206 Sweden 27600 C 1387 1387
207 Sweden 27601 G 1387 1387
208 Sweden 27602 G 1387 1387
209 Sweden 27603 C 1387 1387
210 Sweden 27604 G A 1387 1386 Val71Ile
211 Sweden 27605 T 1387 1387
212 Sweden 27606 A 1387 1387
213 Sweden 27607 A 1387 1387
214 Sweden 27608 A 1387 1387
215 Sweden 27609 A 1387 1387
216 Sweden 27610 C 1387 1387
217 Sweden 27611 A 1387 1387
218 Sweden 27612 C 1387 1387
219 Sweden 27613 G 1387 1387
220 Sweden 27614 T 1387 1387
221 Sweden 27615 C 1387 1387
222 Sweden 27616 T 1387 1387
223 Sweden 27617 A 1387 1387
224 Sweden 27618 T C 1387 1386 Tyr75Tyr
225 Sweden 27619 C 1387 1387
226 Sweden 27620 A 1387 1387
227 Sweden 27621 G 1387 1387
228 Sweden 27622 T 1387 1387
229 Sweden 27623 T 1387 1387
230 Sweden 27624 A 1387 1387
231 Sweden 27625 C 1387 1387
232 Sweden 27626 G A 1387 1386 Arg78His
233 Sweden 27627 T 1387 1387
234 Sweden 27628 G 1387 1387
235 Sweden 27629 C T 1387 1386 Ala79Val
236 Sweden 27630 C T 1387 1386 Ala79Ala
237 Sweden 27631 A 1387 1387
238 Sweden 27632 G 1387 1387
239 Sweden 27633 A 1387 1387
240 Sweden 27634 T 1387 1387
241 Sweden 27635 C 1387 1387
242 Sweden 27636 A 1387 1387
243 Sweden 27637 G 1387 1387
244 Sweden 27638 T 1387 1387
245 Sweden 27639 T 1387 1387
246 Sweden 27640 T 1387 1387
247 Sweden 27641 C T 1387 1386 Ser83Leu
248 Sweden 27642 A 1387 1387
249 Sweden 27643 C 1387 1387
250 Sweden 27644 C 1387 1387
251 Sweden 27645 T 1387 1387
252 Sweden 27646 A 1387 1387
253 Sweden 27647 A 1387 1387
254 Sweden 27648 A 1387 1387
255 Sweden 27649 C 1387 1387
256 Sweden 27650 T 1387 1387
257 Sweden 27651 G 1387 1387
258 Sweden 27652 T 1387 1387
259 Sweden 27653 T 1387 1387
260 Sweden 27654 C 1387 1387
261 Sweden 27655 A 1387 1387
262 Sweden 27656 T 1387 1387
263 Sweden 27657 C 1387 1387
264 Sweden 27658 A 1387 1387
265 Sweden 27659 G 1387 1387
266 Sweden 27660 A 1387 1387
267 Sweden 27661 C 1387 1387
268 Sweden 27662 A 1387 1387
269 Sweden 27663 A 1387 1387
270 Sweden 27664 G 1387 1387
271 Sweden 27665 A 1387 1387
272 Sweden 27666 G 1387 1387
273 Sweden 27667 G 1387 1387
274 Sweden 27668 A 1387 1387
275 Sweden 27669 A 1387 1387
276 Sweden 27670 G 1387 1387
277 Sweden 27671 T 1387 1387
278 Sweden 27672 T 1387 1387
279 Sweden 27673 C 1387 1387
280 Sweden 27674 A T 1387 1305 Gln94Leu
281 Sweden 27675 A 1387 1387
282 Sweden 27676 G C 1387 1386 Glu95Gln
283 Sweden 27677 A 1387 1387
284 Sweden 27678 A 1387 1387
285 Sweden 27679 C T 1387 1386 Leu96Phe
286 Sweden 27680 T 1387 1387
287 Sweden 27681 T 1387 1387
288 Sweden 27682 T 1387 1387
289 Sweden 27683 A 1387 1387
290 Sweden 27684 C T 1387 1386 Tyr97Tyr
291 Sweden 27685 T 1387 1387
292 Sweden 27686 C A 1387 1386 Ser98Tyr
293 Sweden 27687 T 1387 1387
294 Sweden 27688 C 1387 1387
295 Sweden 27689 C 1387 1387
296 Sweden 27690 A 1387 1387
297 Sweden 27691 A 1387 1387
298 Sweden 27692 T 1387 1387
299 Sweden 27693 T 1387 1387
300 Sweden 27694 T 1387 1387
301 Sweden 27695 T 1387 1387
302 Sweden 27696 T 1387 1387
303 Sweden 27697 C T 1387 1386 Leu102Phe
304 Sweden 27698 T 1387 1387
305 Sweden 27699 T 1387 1387
306 Sweden 27700 A 1387 1387
307 Sweden 27701 T 1387 1387
308 Sweden 27702 T 1387 1387
309 Sweden 27703 G T 1387 1386 Val104Phe
310 Sweden 27704 T 1387 1387
311 Sweden 27705 T 1387 1387
312 Sweden 27706 G T 1387 1385 Ala105Ser
313 Sweden 27707 C 1387 1387
314 Sweden 27708 G 1387 1387
315 Sweden 27709 G 1387 1387
316 Sweden 27710 C T 1387 1386 Ala106Val
317 Sweden 27711 A 1387 1387
318 Sweden 27712 A 1387 1387
319 Sweden 27713 T 1387 1387
320 Sweden 27714 A 1387 1387
321 Sweden 27715 G 1387 1387
322 Sweden 27716 T 1387 1387
323 Sweden 27717 G 1387 1387
324 Sweden 27718 T 1387 1387
325 Sweden 27719 T 1387 1387
326 Sweden 27720 T 1387 1387
327 Sweden 27721 A 1387 1387
328 Sweden 27722 T 1387 1387
329 Sweden 27723 A 1387 1387
330 Sweden 27724 A 1387 1387
331 Sweden 27725 C 1387 1387
332 Sweden 27726 A 1387 1387
333 Sweden 27727 C 1387 1387
334 Sweden 27728 T 1387 1387
335 Sweden 27729 T 1387 1387
336 Sweden 27730 T 1387 1387
337 Sweden 27731 G 1387 1387
338 Sweden 27732 C 1387 1387
339 Sweden 27733 T 1387 1387
340 Sweden 27734 T 1387 1387
341 Sweden 27735 C 1387 1387
342 Sweden 27736 A G 1387 1386 Thr115Ala
343 Sweden 27737 C 1387 1387
344 Sweden 27738 A 1387 1387
345 Sweden 27739 C 1387 1387
346 Sweden 27740 T 1387 1387
347 Sweden 27741 C 1387 1387
348 Sweden 27742 A 1387 1387
349 Sweden 27743 A 1387 1387
350 Sweden 27744 A 1387 1387
351 Sweden 27745 A 1387 1387
352 Sweden 27746 G 1387 1387
353 Sweden 27747 A 1387 1387
354 Sweden 27748 A 1387 1387
355 Sweden 27749 A 1387 1387
356 Sweden 27750 G 1387 1387
357 Sweden 27751 A 1387 1387
358 Sweden 27752 C 1387 1387
359 Sweden 27753 A 1387 1387
360 Sweden 27754 G T 1387 1386 Glu121*
361 Sweden 27755 A 1387 1387
362 Sweden 27756 A 1387 1387
363 Sweden 27757 T 1387 1387
364 Sweden 27758 G 1386 1386
365 Sweden 27759 A 1386 1386