National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1                             4 2 5  
C     18         1                            
D     6 1   1                                
E 2   24     1 1         2         1       1  
F     30         3     1   1                  
G 1   12     1                       2     1  
H     9                           1         2
I     25                   1             1 1  
K     21       1               2              
L     45         2         7     3   1        
M     6                                      
N     6                       2              
P     18             1     2     1     4      
Q 1   15             1     2       1          
R     15               2   1         1   2    
S     21 1       1         1     2     2      
T     30 1             6       1         1    
V     24         1     1   2               1  
Y     15             2                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Spain 27394 A 7359 7359
1 Spain 27395 T 7360 7360
2 Spain 27396 G 7360 7360
3 Spain 27397 A G 7361 7360 Lys2Glu
4 Spain 27398 A 7361 7361
5 Spain 27399 A T 7361 7360 Lys2Asn
6 Spain 27400 A 7361 7361
7 Spain 27401 T 7361 7361
8 Spain 27402 T 7361 7361
9 Spain 27403 A 7361 7360
10 Spain 27404 T 7361 7361
11 Spain 27405 T 7361 7361
12 Spain 27406 C 7361 7360
13 Spain 27407 T 7361 7361
14 Spain 27408 T C 7361 7360 Leu5Leu
15 Spain 27409 T 7361 7361
16 Spain 27410 T 7361 7361
17 Spain 27411 C 7361 7360
18 Spain 27412 T 7361 7361
19 Spain 27413 T 7361 7361
20 Spain 27414 G 7361 7361
21 Spain 27415 G A 7361 7360 Ala8Thr
22 Spain 27416 C T 7361 7360 Ala8Val
23 Spain 27417 A 7361 7361
24 Spain 27418 C 7361 7361
25 Spain 27419 T 7361 7361
26 Spain 27420 G 7361 7360
27 Spain 27421 A C 7361 7360 Ile10Leu
28 Spain 27422 T 7361 7361
29 Spain 27423 A 7361 7361
30 Spain 27424 A 7361 7361
31 Spain 27425 C T 7361 7358 Thr11Ile
32 Spain 27426 A 7361 7361
33 Spain 27427 C 7361 7361
34 Spain 27428 T 7361 7361
35 Spain 27429 C 7361 7361
36 Spain 27430 G 7361 7361
37 Spain 27431 C T 7361 7358 Ala13Val
38 Spain 27432 T 7361 7361
39 Spain 27433 A 7361 7361
40 Spain 27434 C T,A 7361 7344 Thr14Ile-p.Thr14Asn
41 Spain 27435 T 7361 7361
42 Spain 27436 T 7360 7360
43 Spain 27437 G 7360 7360
44 Spain 27438 T 7360 7360
45 Spain 27439 G 7360 7360
46 Spain 27440 A 7360 7359
47 Spain 27441 G T 7360 7356 Glu16Asp
48 Spain 27442 C 7360 7359
49 Spain 27443 T 7360 7358
50 Spain 27444 T C 7360 7357 Leu17Leu
51 Spain 27445 T 7360 7358
52 Spain 27446 A 7360 7358
53 Spain 27447 T C 7360 7356 Tyr18Tyr
54 Spain 27448 C 7360 7357
55 Spain 27449 A 7360 7357
56 Spain 27450 C 7360 7357
57 Spain 27451 T 7360 7356
58 Spain 27452 A 7360 7357
59 Spain 27453 C 7360 7357
60 Spain 27454 C 7362 7359
61 Spain 27455 A 7361 7359
62 Spain 27456 A G 7361 7356 Gln21Gln
63 Spain 27457 G 7363 7361
64 Spain 27458 A 7363 7361
65 Spain 27459 G 7363 7361
66 Spain 27460 T 7363 7361
67 Spain 27461 G T 7368 7365 Cys23Phe
68 Spain 27462 T 7369 7369
69 Spain 27463 G 7369 7368
70 Spain 27464 T 7370 7370
71 Spain 27465 T 7370 7370
72 Spain 27466 A 7370 7370
73 Spain 27467 G T,C 7371 7367 Arg25Ile-p.Arg25Thr
74 Spain 27468 A 7372 7372
75 Spain 27469 G C 7372 7370 Gly26Arg
76 Spain 27470 G 7373 7373
77 Spain 27471 T 7373 7373
78 Spain 27472 A 7373 7372
79 Spain 27473 C 7373 7372
80 Spain 27474 A 7373 7372
81 Spain 27475 A 7373 7372
82 Spain 27476 C T 7373 7343 Thr28Ile
83 Spain 27477 A 7373 7372
84 Spain 27478 G T 7373 7371 Val29Leu
85 Spain 27479 T 7373 7372
86 Spain 27480 A 7373 7372
87 Spain 27481 C 7373 7369
88 Spain 27482 T 7373 7371
89 Spain 27483 T 7373 7371
90 Spain 27484 T C 7373 7370 Leu31Leu
91 Spain 27485 T 7373 7372
92 Spain 27486 A 7373 7371
93 Spain 27487 A 7373 7371
94 Spain 27488 A 7373 7372
95 Spain 27489 A 7373 7372
96 Spain 27490 G A 7373 7371 Glu33Lys
97 Spain 27491 A 7373 7372
98 Spain 27492 A 7373 7372
99 Spain 27493 C T 7373 7368 Pro34Ser
100 Spain 27494 C T 7373 7371 Pro34Leu
101 Spain 27495 T 7373 7371
102 Spain 27496 T 7373 7371
103 Spain 27497 G 7373 7371
104 Spain 27498 C 7373 7371
105 Spain 27499 T 7373 7371
106 Spain 27500 C T 7370 7366 Ser36Phe
107 Spain 27501 T 7370 7368
108 Spain 27502 T G,C 7370 7366 Ser37Ala-p.Ser37Pro
109 Spain 27503 C 7369 7367
110 Spain 27504 T 7369 7367
111 Spain 27505 G C,T 7369 7363 Gly38*-p.Gly38Arg
112 Spain 27506 G T 7369 7361 Gly38Val
113 Spain 27507 A 7369 7367
114 Spain 27508 A 7369 7367
115 Spain 27509 C T 7369 7365 Thr39Ile
116 Spain 27510 A 7369 7367
117 Spain 27511 T C 7369 7366 Tyr40His
118 Spain 27512 A 7356 7355
119 Spain 27513 C T 7356 7354 Tyr40Tyr
120 Spain 27514 G A 7355 7353 Glu41Lys
121 Spain 27515 A 7354 7353
122 Spain 27516 G A 7354 7348 Glu41Glu
123 Spain 27517 G 7354 7353
124 Spain 27518 G A 7354 7352 Gly42Asp
125 Spain 27519 C 7354 7353
126 Spain 27520 A 7345 7343
127 Spain 27521 A 7345 7343
128 Spain 27522 T C 7344 7341 Asn43Asn
129 Spain 27523 T 7342 7340
130 Spain 27524 C 7341 7339
131 Spain 27525 A 7329 7327
132 Spain 27526 C T 7328 7325 Pro45Ser
133 Spain 27527 C T 7294 7288 Pro45Leu
134 Spain 27528 A 7172 7139
135 Spain 27529 T 7172 7136
136 Spain 27530 T 7172 7136
137 Spain 27531 T 7172 7136
138 Spain 27532 C T 7172 7133 His47Tyr
139 Spain 27533 A 7172 7136
140 Spain 27534 T 7169 7148
141 Spain 27535 C 7169 7142
142 Spain 27536 C 7169 7145
143 Spain 27537 T 7167 7142
144 Spain 27538 C T 7167 7140 Leu49Leu
145 Spain 27539 T G 7167 7142 Leu49Arg
146 Spain 27540 A 7167 7144
147 Spain 27541 G T,A 7167 7142 Ala50Ser-p.Ala50Thr
148 Spain 27542 C 7167 7144
149 Spain 27543 T 7166 7139
150 Spain 27544 G 7166 7140
151 Spain 27545 A C 7165 7131 Asp51Ala
152 Spain 27546 T 7164 7133
153 Spain 27547 A 7164 7134
154 Spain 27548 A 7164 7134
155 Spain 27549 C T 7164 7132 Asn52Asn
156 Spain 27550 A 7164 7133
157 Spain 27551 A 7164 7139
158 Spain 27552 A 7164 7142
159 Spain 27553 T 7165 7142
160 Spain 27554 T 7164 7144
161 Spain 27555 T A 7163 7141 Phe54Leu
162 Spain 27556 G T 7162 7140 Ala55Ser
163 Spain 27557 C 7162 7144
164 Spain 27558 A 7161 7143
165 Spain 27559 C 7160 7142
166 Spain 27560 T C 7160 7137 Leu56Pro
167 Spain 27561 G T 7160 7146 Leu56Leu
168 Spain 27562 A 7160 7150
169 Spain 27563 C 7160 7150
170 Spain 27564 T 7160 7150
171 Spain 27565 T 7160 7148
172 Spain 27566 G 7160 7151
173 Spain 27567 C 7161 7154
174 Spain 27568 T 7161 7155
175 Spain 27569 T 7161 7155
176 Spain 27570 T 7161 7153
177 Spain 27571 A 7161 7152
178 Spain 27572 G 7161 7155
179 Spain 27573 C T 7161 7154 Ser60Ser
180 Spain 27574 A 7158 7152
181 Spain 27575 C T 7158 7135 Thr61Ile
182 Spain 27576 T 7158 7144
183 Spain 27577 C 7158 7146
184 Spain 27578 A T 7158 7143 Gln62Leu
185 Spain 27579 A 7156 7146
186 Spain 27580 T 7152 7142
187 Spain 27581 T 7152 7142
188 Spain 27582 T 7152 7143
189 Spain 27583 G 7152 7146
190 Spain 27584 C 7152 7145
191 Spain 27585 T 7152 7141
192 Spain 27586 T 7152 7139
193 Spain 27587 T 7152 7139
194 Spain 27588 T 7152 7145
195 Spain 27589 G 7153 7146
196 Spain 27590 C T 7153 7145 Ala66Val
197 Spain 27591 T 7154 7146
198 Spain 27592 T 7154 7146
199 Spain 27593 G 7156 7148
200 Spain 27594 T 7157 7149
201 Spain 27595 C 7157 7147
202 Spain 27596 C 7157 7149
203 Spain 27597 T C 7153 7142 Pro68Pro
204 Spain 27598 G 7154 7144
205 Spain 27599 A 7154 7144
206 Spain 27600 C T 7154 7142 Asp69Asp
207 Spain 27601 G 7154 7143
208 Spain 27602 G 7154 7146
209 Spain 27603 C 7154 7145
210 Spain 27604 G T 7154 7145 Val71Leu
211 Spain 27605 T 7154 7146
212 Spain 27606 A T 7154 7144 Val71Val
213 Spain 27607 A 7154 7148
214 Spain 27608 A 7154 7148
215 Spain 27609 A 7154 7149
216 Spain 27610 C T 7155 7142 His73Tyr
217 Spain 27611 A 7154 7145
218 Spain 27612 C A 7155 7145 His73Gln
219 Spain 27613 G 7155 7147
220 Spain 27614 T 7155 7150
221 Spain 27615 C 7155 7149
222 Spain 27616 T 7155 7148
223 Spain 27617 A 7155 7148
224 Spain 27618 T 7155 7146
225 Spain 27619 C 7153 7146
226 Spain 27620 A 7153 7147
227 Spain 27621 G 7153 7148
228 Spain 27622 T 7152 7147
229 Spain 27623 T 7151 7143
230 Spain 27624 A 7152 7144
231 Spain 27625 C 7150 7140
232 Spain 27626 G T 7150 7139 Arg78Leu
233 Spain 27627 T 7150 7144
234 Spain 27628 G T 7150 7143 Ala79Ser
235 Spain 27629 C T 7150 7144 Ala79Val
236 Spain 27630 C T 7149 7140 Ala79Ala
237 Spain 27631 A 7149 7141
238 Spain 27632 G T 7149 7140 Arg80Ile
239 Spain 27633 A 7149 7142
240 Spain 27634 T C 7151 7137 Ser81Pro
241 Spain 27635 C 7151 7144
242 Spain 27636 A T 7150 7137 Ser81Ser
243 Spain 27637 G 7150 7142
244 Spain 27638 T 7150 7142
245 Spain 27639 T 7150 7142
246 Spain 27640 T 7150 7142
247 Spain 27641 C T 7150 7142 Ser83Leu
248 Spain 27642 A 7150 7148
249 Spain 27643 C T 7150 7148 Pro84Ser
250 Spain 27644 C A 7150 7147 Pro84His
251 Spain 27645 T 7150 7148
252 Spain 27646 A 7150 7149
253 Spain 27647 A 7150 7149
254 Spain 27648 A 7150 7148
255 Spain 27649 C 7150 7147
256 Spain 27650 T 7148 7139
257 Spain 27651 G T 7148 7136 Leu86Leu
258 Spain 27652 T 7148 7145
259 Spain 27653 T 7148 7145
260 Spain 27654 C T 7148 7143 Phe87Phe
261 Spain 27655 A G 7149 7145 Ile88Val
262 Spain 27656 T C 7149 7144 Ile88Thr
263 Spain 27657 C 7149 7144
264 Spain 27658 A 7148 7141
265 Spain 27659 G 7148 7144
266 Spain 27660 A 7147 7143
267 Spain 27661 C 7146 7140
268 Spain 27662 A 7146 7142
269 Spain 27663 A 7146 7142
270 Spain 27664 G 7145 7143
271 Spain 27665 A 7145 7143
272 Spain 27666 G 7145 7144
273 Spain 27667 G 7145 7143
274 Spain 27668 A 7144 7140
275 Spain 27669 A 7144 7142
276 Spain 27670 G T 7143 7135 Val93Phe
277 Spain 27671 T 7143 7141
278 Spain 27672 T 7143 7140
279 Spain 27673 C T 7143 7139 Gln94*
280 Spain 27674 A T 7143 7140 Gln94Leu
281 Spain 27675 A C 7143 7138 Gln94His
282 Spain 27676 G T,C 7143 7127 Glu95*-p.Glu95Gln
283 Spain 27677 A 7143 7143
284 Spain 27678 A 7143 7143
285 Spain 27679 C T 7142 7137 Leu96Phe
286 Spain 27680 T C 7143 7123 Leu96Pro
287 Spain 27681 T 7143 7138
288 Spain 27682 T C 7143 7135 Tyr97His
289 Spain 27683 A 7143 7138
290 Spain 27684 C 7143 7138
291 Spain 27685 T 7143 7136
292 Spain 27686 C 7143 7136
293 Spain 27687 T 7144 7136
294 Spain 27688 C T 7143 7130 Pro99Ser
295 Spain 27689 C 7143 7135
296 Spain 27690 A 7143 7135
297 Spain 27691 A 7143 7135
298 Spain 27692 T 7143 7133
299 Spain 27693 T 7143 7137
300 Spain 27694 T A 7141 7133 Phe101Ile
301 Spain 27695 T 7140 7134
302 Spain 27696 T 7140 7134
303 Spain 27697 C 7140 7132
304 Spain 27698 T 7140 7132
305 Spain 27699 T 7140 7132
306 Spain 27700 A 7140 7131
307 Spain 27701 T 7139 7132
308 Spain 27702 T 7139 7132
309 Spain 27703 G A 7139 7131 Val104Ile
310 Spain 27704 T 7139 7133
311 Spain 27705 T 7139 7133
312 Spain 27706 G T 7139 7132 Ala105Ser
313 Spain 27707 C T 7138 7130 Ala105Val
314 Spain 27708 G 7138 7132
315 Spain 27709 G 7138 7133
316 Spain 27710 C 7138 7133
317 Spain 27711 A 7138 7132
318 Spain 27712 A 7138 7136
319 Spain 27713 T 7138 7135
320 Spain 27714 A 7138 7136
321 Spain 27715 G 7138 7135
322 Spain 27716 T 7138 7133
323 Spain 27717 G 7138 7136
324 Spain 27718 T 7137 7135
325 Spain 27719 T 7138 7137
326 Spain 27720 T C 7138 7136 Phe109Phe
327 Spain 27721 A 7138 7137
328 Spain 27722 T 7138 7137
329 Spain 27723 A 7138 7136
330 Spain 27724 A 7137 7136
331 Spain 27725 C 7136 7136
332 Spain 27726 A 7135 7135
333 Spain 27727 C 7135 7135
334 Spain 27728 T 7130 7124
335 Spain 27729 T 7130 7125
336 Spain 27730 T 7130 7123
337 Spain 27731 G 7130 7128
338 Spain 27732 C 7130 7128
339 Spain 27733 T 7130 7128
340 Spain 27734 T 7130 7127
341 Spain 27735 C T 7128 7125 Phe114Phe
342 Spain 27736 A G 7127 7122 Thr115Ala
343 Spain 27737 C 7125 7121
344 Spain 27738 A 7125 7121
345 Spain 27739 C T 7125 7117 Leu116Phe
346 Spain 27740 T C 7120 7114 Leu116Pro
347 Spain 27741 C T 7119 7115 Leu116Leu
348 Spain 27742 A 7118 7114
349 Spain 27743 A 7118 7118
350 Spain 27744 A 7118 7118
351 Spain 27745 A 7117 7116
352 Spain 27746 G C 7117 7115 Arg118Thr
353 Spain 27747 A G 7117 7112 Arg118Arg
354 Spain 27748 A 7116 7116
355 Spain 27749 A 7114 7113
356 Spain 27750 G T 7113 7110 Lys119Asn
357 Spain 27751 A 7113 7112
358 Spain 27752 C T 7112 7100 Thr120Ile
359 Spain 27753 A T 7109 7104 Thr120Thr
360 Spain 27754 G T 7107 7099 Glu121*
361 Spain 27755 A T 7106 7103 Glu121Val
362 Spain 27756 A 7104 7103
363 Spain 27757 T 7104 7104
364 Spain 27758 G 7099 7099
365 Spain 27759 A 7096 7096