National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                               2 2 1  
C     18                                     1
D     6                                      
E 2   24     1                             1  
F     30   1     1     1                      
G     12     1     1                          
H     9             1                       2
I     25                                      
K     21                                      
L     45         1                            
M     6               1                      
N     6                 1                    
P     18                         2 1   2      
Q 2   15                           2          
R     15                                      
S     21                   1           1 1    
T     30                                      
V     24         2     1                      
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Korea 27394 A 1631 1631
1 South_Korea 27395 T 1631 1631
2 South_Korea 27396 G T 1631 1630 Met1?
3 South_Korea 27397 A 1631 1631
4 South_Korea 27398 A 1631 1631
5 South_Korea 27399 A 1631 1631
6 South_Korea 27400 A 1631 1631
7 South_Korea 27401 T 1631 1631
8 South_Korea 27402 T 1631 1631
9 South_Korea 27403 A 1631 1631
10 South_Korea 27404 T 1631 1631
11 South_Korea 27405 T 1631 1631
12 South_Korea 27406 C 1631 1631
13 South_Korea 27407 T 1631 1631
14 South_Korea 27408 T 1631 1631
15 South_Korea 27409 T 1631 1631
16 South_Korea 27410 T 1631 1631
17 South_Korea 27411 C 1631 1631
18 South_Korea 27412 T 1631 1631
19 South_Korea 27413 T 1631 1631
20 South_Korea 27414 G 1631 1631
21 South_Korea 27415 G 1631 1631
22 South_Korea 27416 C 1631 1631
23 South_Korea 27417 A 1631 1631
24 South_Korea 27418 C 1631 1631
25 South_Korea 27419 T 1631 1631
26 South_Korea 27420 G 1631 1631
27 South_Korea 27421 A 1631 1631
28 South_Korea 27422 T 1631 1631
29 South_Korea 27423 A 1631 1631
30 South_Korea 27424 A 1631 1631
31 South_Korea 27425 C 1631 1631
32 South_Korea 27426 A 1631 1631
33 South_Korea 27427 C 1631 1631
34 South_Korea 27428 T 1631 1631
35 South_Korea 27429 C 1631 1631
36 South_Korea 27430 G 1631 1631
37 South_Korea 27431 C 1631 1631
38 South_Korea 27432 T 1631 1631
39 South_Korea 27433 A 1631 1631
40 South_Korea 27434 C 1631 1631
41 South_Korea 27435 T 1631 1631
42 South_Korea 27436 T 1631 1631
43 South_Korea 27437 G 1631 1631
44 South_Korea 27438 T 1631 1631
45 South_Korea 27439 G 1631 1631
46 South_Korea 27440 A 1631 1631
47 South_Korea 27441 G T 1631 1618 Glu16Asp
48 South_Korea 27442 C 1631 1631
49 South_Korea 27443 T 1631 1631
50 South_Korea 27444 T 1631 1631
51 South_Korea 27445 T 1631 1631
52 South_Korea 27446 A 1631 1631
53 South_Korea 27447 T 1631 1631
54 South_Korea 27448 C 1631 1631
55 South_Korea 27449 A 1631 1631
56 South_Korea 27450 C 1631 1631
57 South_Korea 27451 T 1630 1630
58 South_Korea 27452 A 1630 1630
59 South_Korea 27453 C 1630 1630
60 South_Korea 27454 C T 1630 1629 Gln21*
61 South_Korea 27455 A 1630 1630
62 South_Korea 27456 A 1630 1630
63 South_Korea 27457 G 1630 1630
64 South_Korea 27458 A 1630 1630
65 South_Korea 27459 G 1630 1630
66 South_Korea 27460 T 1630 1630
67 South_Korea 27461 G 1630 1630
68 South_Korea 27462 T 1630 1630
69 South_Korea 27463 G 1630 1630
70 South_Korea 27464 T 1630 1630
71 South_Korea 27465 T 1630 1630
72 South_Korea 27466 A 1630 1630
73 South_Korea 27467 G 1630 1630
74 South_Korea 27468 A 1630 1630
75 South_Korea 27469 G 1630 1630
76 South_Korea 27470 G A 1630 1629 Gly26Asp
77 South_Korea 27471 T 1630 1630
78 South_Korea 27472 A 1630 1630
79 South_Korea 27473 C 1630 1630
80 South_Korea 27474 A 1630 1630
81 South_Korea 27475 A 1630 1630
82 South_Korea 27476 C 1630 1630
83 South_Korea 27477 A 1630 1630
84 South_Korea 27478 G 1630 1630
85 South_Korea 27479 T 1630 1630
86 South_Korea 27480 A 1630 1630
87 South_Korea 27481 C 1630 1630
88 South_Korea 27482 T 1630 1630
89 South_Korea 27483 T 1630 1630
90 South_Korea 27484 T 1630 1630
91 South_Korea 27485 T 1630 1630
92 South_Korea 27486 A 1630 1630
93 South_Korea 27487 A 1630 1630
94 South_Korea 27488 A 1630 1630
95 South_Korea 27489 A 1630 1630
96 South_Korea 27490 G 1630 1630
97 South_Korea 27491 A 1630 1630
98 South_Korea 27492 A 1630 1630
99 South_Korea 27493 C 1630 1630
100 South_Korea 27494 C 1630 1630
101 South_Korea 27495 T 1630 1630
102 South_Korea 27496 T 1630 1630
103 South_Korea 27497 G 1630 1630
104 South_Korea 27498 C 1630 1630
105 South_Korea 27499 T 1630 1630
106 South_Korea 27500 C 1630 1630
107 South_Korea 27501 T 1630 1630
108 South_Korea 27502 T 1630 1630
109 South_Korea 27503 C 1630 1630
110 South_Korea 27504 T 1630 1630
111 South_Korea 27505 G 1630 1630
112 South_Korea 27506 G 1630 1630
113 South_Korea 27507 A 1630 1630
114 South_Korea 27508 A 1630 1630
115 South_Korea 27509 C 1630 1630
116 South_Korea 27510 A 1630 1630
117 South_Korea 27511 T 1630 1630
118 South_Korea 27512 A 1630 1630
119 South_Korea 27513 C 1630 1630
120 South_Korea 27514 G 1630 1630
121 South_Korea 27515 A 1630 1630
122 South_Korea 27516 G 1630 1630
123 South_Korea 27517 G 1630 1630
124 South_Korea 27518 G 1627 1627
125 South_Korea 27519 C A 1627 1625 Gly42Gly
126 South_Korea 27520 A 1627 1627
127 South_Korea 27521 A 1627 1627
128 South_Korea 27522 T A 1626 1625 Asn43Lys
129 South_Korea 27523 T 1624 1624
130 South_Korea 27524 C 1623 1623
131 South_Korea 27525 A C 1623 1621 Ser44Ser
132 South_Korea 27526 C 1623 1623
133 South_Korea 27527 C A 1623 1622 Pro45Gln
134 South_Korea 27528 A C 1617 1615 Pro45Pro
135 South_Korea 27529 T 1612 1609
136 South_Korea 27530 T G 1612 1607 Phe46Cys
137 South_Korea 27531 T 1612 1607
138 South_Korea 27532 C T 1611 1605 His47Tyr
139 South_Korea 27533 A 1610 1604
140 South_Korea 27534 T C 1601 1593 His47His
141 South_Korea 27535 C 1600 1593
142 South_Korea 27536 C 1598 1591
143 South_Korea 27537 T 1597 1590
144 South_Korea 27538 C 1596 1589
145 South_Korea 27539 T 1596 1589
146 South_Korea 27540 A 1596 1589
147 South_Korea 27541 G 1596 1589
148 South_Korea 27542 C 1596 1589
149 South_Korea 27543 T 1596 1589
150 South_Korea 27544 G 1596 1589
151 South_Korea 27545 A 1596 1589
152 South_Korea 27546 T 1595 1588
153 South_Korea 27547 A 1595 1588
154 South_Korea 27548 A 1595 1588
155 South_Korea 27549 C 1595 1586
156 South_Korea 27550 A 1595 1586
157 South_Korea 27551 A 1595 1586
158 South_Korea 27552 A 1595 1586
159 South_Korea 27553 T A 1595 1585 Phe54Ile
160 South_Korea 27554 T 1595 1586
161 South_Korea 27555 T 1594 1585
162 South_Korea 27556 G T,A 1594 1583 Ala55Ser-p.Ala55Thr
163 South_Korea 27557 C 1594 1585
164 South_Korea 27558 A 1594 1585
165 South_Korea 27559 C 1594 1584
166 South_Korea 27560 T 1594 1584
167 South_Korea 27561 G 1594 1586
168 South_Korea 27562 A 1594 1586
169 South_Korea 27563 C 1594 1586
170 South_Korea 27564 T 1594 1586
171 South_Korea 27565 T 1594 1587
172 South_Korea 27566 G 1594 1587
173 South_Korea 27567 C 1594 1587
174 South_Korea 27568 T 1594 1587
175 South_Korea 27569 T 1594 1587
176 South_Korea 27570 T 1594 1586
177 South_Korea 27571 A 1594 1586
178 South_Korea 27572 G 1594 1586
179 South_Korea 27573 C 1594 1586
180 South_Korea 27574 A 1594 1587
181 South_Korea 27575 C 1594 1589
182 South_Korea 27576 T 1594 1589
183 South_Korea 27577 C T 1593 1590 Gln62*
184 South_Korea 27578 A 1593 1591
185 South_Korea 27579 A G 1593 1590 Gln62Gln
186 South_Korea 27580 T 1593 1591
187 South_Korea 27581 T 1593 1591
188 South_Korea 27582 T 1593 1591
189 South_Korea 27583 G T 1593 1591 Ala64Ser
190 South_Korea 27584 C 1593 1593
191 South_Korea 27585 T 1592 1592
192 South_Korea 27586 T 1592 1592
193 South_Korea 27587 T 1592 1592
194 South_Korea 27588 T 1592 1592
195 South_Korea 27589 G 1592 1592
196 South_Korea 27590 C 1592 1592
197 South_Korea 27591 T 1592 1592
198 South_Korea 27592 T 1592 1592
199 South_Korea 27593 G A 1592 1591 Cys67Tyr
200 South_Korea 27594 T 1592 1592
201 South_Korea 27595 C 1592 1592
202 South_Korea 27596 C 1592 1592
203 South_Korea 27597 T 1592 1592
204 South_Korea 27598 G 1592 1592
205 South_Korea 27599 A 1592 1592
206 South_Korea 27600 C 1592 1592
207 South_Korea 27601 G 1590 1590
208 South_Korea 27602 G 1591 1591
209 South_Korea 27603 C 1590 1590
210 South_Korea 27604 G 1590 1590
211 South_Korea 27605 T 1590 1590
212 South_Korea 27606 A 1590 1590
213 South_Korea 27607 A 1590 1590
214 South_Korea 27608 A 1590 1590
215 South_Korea 27609 A 1590 1590
216 South_Korea 27610 C T 1590 1589 His73Tyr
217 South_Korea 27611 A 1589 1588
218 South_Korea 27612 C 1589 1588
219 South_Korea 27613 G 1589 1588
220 South_Korea 27614 T 1589 1588
221 South_Korea 27615 C 1589 1588
222 South_Korea 27616 T 1589 1588
223 South_Korea 27617 A 1589 1588
224 South_Korea 27618 T 1589 1588
225 South_Korea 27619 C 1589 1588
226 South_Korea 27620 A 1589 1588
227 South_Korea 27621 G A 1589 1586 Gln76Gln
228 South_Korea 27622 T 1589 1588
229 South_Korea 27623 T 1589 1588
230 South_Korea 27624 A 1589 1588
231 South_Korea 27625 C 1589 1588
232 South_Korea 27626 G 1589 1588
233 South_Korea 27627 T 1589 1588
234 South_Korea 27628 G 1589 1588
235 South_Korea 27629 C 1589 1589
236 South_Korea 27630 C 1589 1589
237 South_Korea 27631 A 1589 1589
238 South_Korea 27632 G 1589 1589
239 South_Korea 27633 A 1588 1588
240 South_Korea 27634 T 1588 1588
241 South_Korea 27635 C T 1588 1587 Ser81Leu
242 South_Korea 27636 A 1587 1586
243 South_Korea 27637 G 1586 1584
244 South_Korea 27638 T 1586 1584
245 South_Korea 27639 T 1586 1584
246 South_Korea 27640 T 1586 1584
247 South_Korea 27641 C 1586 1583
248 South_Korea 27642 A 1586 1583
249 South_Korea 27643 C T 1586 1569 Pro84Ser
250 South_Korea 27644 C 1586 1583
251 South_Korea 27645 T G 1586 1582 Pro84Pro
252 South_Korea 27646 A 1586 1583
253 South_Korea 27647 A 1586 1583
254 South_Korea 27648 A 1586 1583
255 South_Korea 27649 C 1585 1582
256 South_Korea 27650 T 1582 1577
257 South_Korea 27651 G 1582 1577
258 South_Korea 27652 T 1582 1579
259 South_Korea 27653 T 1582 1579
260 South_Korea 27654 C T 1582 1578 Phe87Phe
261 South_Korea 27655 A 1582 1579
262 South_Korea 27656 T 1582 1579
263 South_Korea 27657 C 1582 1579
264 South_Korea 27658 A 1582 1579
265 South_Korea 27659 G 1582 1580
266 South_Korea 27660 A 1582 1579
267 South_Korea 27661 C 1582 1579
268 South_Korea 27662 A 1582 1580
269 South_Korea 27663 A 1582 1580
270 South_Korea 27664 G 1582 1580
271 South_Korea 27665 A 1582 1581
272 South_Korea 27666 G 1582 1581
273 South_Korea 27667 G 1582 1581
274 South_Korea 27668 A 1582 1581
275 South_Korea 27669 A 1582 1581
276 South_Korea 27670 G T 1582 1579 Val93Phe
277 South_Korea 27671 T 1582 1582
278 South_Korea 27672 T 1582 1582
279 South_Korea 27673 C 1582 1582
280 South_Korea 27674 A 1582 1582
281 South_Korea 27675 A 1582 1582
282 South_Korea 27676 G T 1582 1581 Glu95*
283 South_Korea 27677 A 1582 1582
284 South_Korea 27678 A 1582 1582
285 South_Korea 27679 C T 1582 1581 Leu96Phe
286 South_Korea 27680 T 1581 1581
287 South_Korea 27681 T 1581 1581
288 South_Korea 27682 T 1581 1581
289 South_Korea 27683 A 1581 1581
290 South_Korea 27684 C T 1581 1580 Tyr97Tyr
291 South_Korea 27685 T A 1581 1580 Ser98Thr
292 South_Korea 27686 C 1581 1581
293 South_Korea 27687 T 1581 1581
294 South_Korea 27688 C T 1581 1579 Pro99Ser
295 South_Korea 27689 C 1581 1581
296 South_Korea 27690 A 1581 1581
297 South_Korea 27691 A 1581 1581
298 South_Korea 27692 T 1581 1581
299 South_Korea 27693 T 1581 1581
300 South_Korea 27694 T 1581 1581
301 South_Korea 27695 T 1581 1581
302 South_Korea 27696 T 1581 1581
303 South_Korea 27697 C 1581 1581
304 South_Korea 27698 T 1581 1581
305 South_Korea 27699 T 1581 1581
306 South_Korea 27700 A 1581 1581
307 South_Korea 27701 T 1581 1581
308 South_Korea 27702 T 1581 1581
309 South_Korea 27703 G T,A 1581 1546 Val104Phe-p.Val104Ile
310 South_Korea 27704 T 1581 1581
311 South_Korea 27705 T 1581 1579
312 South_Korea 27706 G A 1580 1578 Ala105Thr
313 South_Korea 27707 C T 1580 1563 Ala105Val
314 South_Korea 27708 G 1579 1578
315 South_Korea 27709 G 1579 1578
316 South_Korea 27710 C 1579 1578
317 South_Korea 27711 A 1579 1578
318 South_Korea 27712 A 1579 1578
319 South_Korea 27713 T 1579 1578
320 South_Korea 27714 A 1578 1577
321 South_Korea 27715 G 1578 1577
322 South_Korea 27716 T 1577 1577
323 South_Korea 27717 G 1577 1577
324 South_Korea 27718 T 1575 1575
325 South_Korea 27719 T 1575 1575
326 South_Korea 27720 T 1575 1575
327 South_Korea 27721 A 1575 1575
328 South_Korea 27722 T 1575 1575
329 South_Korea 27723 A 1575 1575
330 South_Korea 27724 A 1575 1575
331 South_Korea 27725 C 1575 1575
332 South_Korea 27726 A 1574 1572
333 South_Korea 27727 C 1573 1571
334 South_Korea 27728 T 1570 1566
335 South_Korea 27729 T 1570 1566
336 South_Korea 27730 T 1569 1565
337 South_Korea 27731 G 1569 1566
338 South_Korea 27732 C 1569 1566
339 South_Korea 27733 T 1569 1566
340 South_Korea 27734 T 1568 1565
341 South_Korea 27735 C 1567 1564
342 South_Korea 27736 A 1567 1564
343 South_Korea 27737 C 1567 1565
344 South_Korea 27738 A 1567 1564
345 South_Korea 27739 C 1567 1565
346 South_Korea 27740 T 1566 1564
347 South_Korea 27741 C 1566 1564
348 South_Korea 27742 A 1566 1564
349 South_Korea 27743 A 1566 1566
350 South_Korea 27744 A 1566 1566
351 South_Korea 27745 A 1566 1566
352 South_Korea 27746 G 1566 1566
353 South_Korea 27747 A 1566 1566
354 South_Korea 27748 A 1566 1566
355 South_Korea 27749 A 1566 1566
356 South_Korea 27750 G 1566 1566
357 South_Korea 27751 A 1566 1566
358 South_Korea 27752 C 1566 1566
359 South_Korea 27753 A 1566 1566
360 South_Korea 27754 G T 1566 1565 Glu121*
361 South_Korea 27755 A T 1566 1565 Glu121Val
362 South_Korea 27756 A 1566 1566
363 South_Korea 27757 T 1566 1566
364 South_Korea 27758 G 1565 1565
365 South_Korea 27759 A 1565 1565