National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     3                             1          
-     370                                        
?                                              
A     27 2   1 1                       2 2      
C     18   1     1                           1  
D     6     2                                  
E 2   24     1 2         1                      
F     30         1                     1        
G 1   12 1         1                       1    
H     9             1         1                
I     25                       1         1      
K     21                       1                
L     45         4     1   6                    
M     6                                 1 1    
N     6                 1     1                
P     18                   3     2     2        
Q 2   15             2             1 1          
R     15               3               1        
S     21                               1        
T     30 1             4                 3      
V     24         3     1                        
W                                              
Y     15         1                             1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 27394 A 3052 3052
1 South_Africa 27395 T 3052 3052
2 South_Africa 27396 G 3052 3052
3 South_Africa 27397 A 3052 3052
4 South_Africa 27398 A 3052 3052
5 South_Africa 27399 A 3052 3052
6 South_Africa 27400 A 3052 3052
7 South_Africa 27401 T 3052 3052
8 South_Africa 27402 T 3052 3052
9 South_Africa 27403 A 3052 3052
10 South_Africa 27404 T C,A 3052 3050 Ile4Thr-p.Ile4Asn
11 South_Africa 27405 T 3052 3052
12 South_Africa 27406 C T 3052 3047 Leu5Phe
13 South_Africa 27407 T 3052 3052
14 South_Africa 27408 T C 3052 3051 Leu5Leu
15 South_Africa 27409 T 3052 3052
16 South_Africa 27410 T C 3052 3051 Phe6Ser
17 South_Africa 27411 C 3052 3052
18 South_Africa 27412 T 3052 3052
19 South_Africa 27413 T 3052 3052
20 South_Africa 27414 G 3052 3052
21 South_Africa 27415 G A 3052 3049 Ala8Thr
22 South_Africa 27416 C A 3052 3050 Ala8Glu
23 South_Africa 27417 A 3052 3052
24 South_Africa 27418 C 3052 3052
25 South_Africa 27419 T 3052 3052
26 South_Africa 27420 G 3052 3052
27 South_Africa 27421 A 3052 3052
28 South_Africa 27422 T 3052 3052
29 South_Africa 27423 A 3052 3052
30 South_Africa 27424 A 3052 3052
31 South_Africa 27425 C 3052 3052
32 South_Africa 27426 A G 3052 3051 Thr11Thr
33 South_Africa 27427 C 3052 3052
34 South_Africa 27428 T 3052 3051
35 South_Africa 27429 C T 3051 3048 Leu12Leu
36 South_Africa 27430 G 3051 3049
37 South_Africa 27431 C 3051 3049
38 South_Africa 27432 T 3051 3049
39 South_Africa 27433 A 3051 3049
40 South_Africa 27434 C T 3051 3046 Thr14Ile
41 South_Africa 27435 T 3051 3049
42 South_Africa 27436 T 3051 3049
43 South_Africa 27437 G 3051 3049
44 South_Africa 27438 T C 3051 3048 Cys15Cys
45 South_Africa 27439 G A 3051 3048 Glu16Lys
46 South_Africa 27440 A 3051 3049
47 South_Africa 27441 G 3051 3049
48 South_Africa 27442 C T 3051 3048 Leu17Phe
49 South_Africa 27443 T 3051 3049
50 South_Africa 27444 T 3051 3049
51 South_Africa 27445 T 3051 3049
52 South_Africa 27446 A 3051 3049
53 South_Africa 27447 T 3052 3050
54 South_Africa 27448 C 3052 3050
55 South_Africa 27449 A 3052 3050
56 South_Africa 27450 C 3052 3050
57 South_Africa 27451 T 3052 3050
58 South_Africa 27452 A 3053 3051
59 South_Africa 27453 C 3053 3051
60 South_Africa 27454 C 3053 3051
61 South_Africa 27455 A 3053 3050
62 South_Africa 27456 A C 3053 3050 Gln21His
63 South_Africa 27457 G 3053 3052
64 South_Africa 27458 A 3053 3052
65 South_Africa 27459 G 3053 3053
66 South_Africa 27460 T 3053 3053
67 South_Africa 27461 G 3053 3053
68 South_Africa 27462 T G 3053 3052 Cys23Trp
69 South_Africa 27463 G T,A 3053 3050 Val24Phe-p.Val24Ile
70 South_Africa 27464 T 3053 3053
71 South_Africa 27465 T 3053 3053
72 South_Africa 27466 A 3053 3053
73 South_Africa 27467 G T 3053 3052 Arg25Ile
74 South_Africa 27468 A 3053 3053
75 South_Africa 27469 G 3053 3053
76 South_Africa 27470 G 3053 3053
77 South_Africa 27471 T 3053 3053
78 South_Africa 27472 A 3053 3053
79 South_Africa 27473 C 3053 3053
80 South_Africa 27474 A 3053 3053
81 South_Africa 27475 A 3053 3053
82 South_Africa 27476 C T 3053 3049 Thr28Ile
83 South_Africa 27477 A C 3053 3049 Thr28Thr
84 South_Africa 27478 G 3053 3053
85 South_Africa 27479 T 3053 3053
86 South_Africa 27480 A 3053 3053
87 South_Africa 27481 C A 3053 3052 Leu30Ile
88 South_Africa 27482 T 3053 3053
89 South_Africa 27483 T 3053 3053
90 South_Africa 27484 T C 3053 3052 Leu31Leu
91 South_Africa 27485 T 3053 3053
92 South_Africa 27486 A 3053 3053
93 South_Africa 27487 A 3053 3053
94 South_Africa 27488 A 3052 3052
95 South_Africa 27489 A 3052 3052
96 South_Africa 27490 G 3052 3052
97 South_Africa 27491 A 3052 3052
98 South_Africa 27492 A 3052 3052
99 South_Africa 27493 C T 3052 3051 Pro34Ser
100 South_Africa 27494 C T 3051 3049 Pro34Leu
101 South_Africa 27495 T 3051 3051
102 South_Africa 27496 T 3051 3051
103 South_Africa 27497 G T 3051 3050 Cys35Phe
104 South_Africa 27498 C 3051 3051
105 South_Africa 27499 T 3051 3051
106 South_Africa 27500 C 3050 3050
107 South_Africa 27501 T 3050 3050
108 South_Africa 27502 T 3050 3050
109 South_Africa 27503 C 3050 3050
110 South_Africa 27504 T C 3050 2995 Ser37Ser
111 South_Africa 27505 G T 3050 3048 Gly38*
112 South_Africa 27506 G T,C 3050 3047 Gly38Val-p.Gly38Ala
113 South_Africa 27507 A 3050 3050
114 South_Africa 27508 A 3050 3050
115 South_Africa 27509 C T 3046 3043 Thr39Ile
116 South_Africa 27510 A 3046 3046
117 South_Africa 27511 T 3046 3046
118 South_Africa 27512 A 3046 3046
119 South_Africa 27513 C T 3045 3044 Tyr40Tyr
120 South_Africa 27514 G 3045 3045
121 South_Africa 27515 A 3042 3042
122 South_Africa 27516 G 3042 3042
123 South_Africa 27517 G 3041 3041
124 South_Africa 27518 G 3041 3041
125 South_Africa 27519 C 3040 3040
126 South_Africa 27520 A 3029 3029
127 South_Africa 27521 A 3028 3028
128 South_Africa 27522 T 3028 3028
129 South_Africa 27523 T 3028 3028
130 South_Africa 27524 C 3028 3028
131 South_Africa 27525 A 3011 3011
132 South_Africa 27526 C T 3011 3010 Pro45Ser
133 South_Africa 27527 C T 2999 2997 Pro45Leu
134 South_Africa 27528 A 2883 2877
135 South_Africa 27529 T 2868 2862
136 South_Africa 27530 T 2866 2860
137 South_Africa 27531 T 2863 2857
138 South_Africa 27532 C A 2859 2850 His47Asn
139 South_Africa 27533 A 2859 2851
140 South_Africa 27534 T 2859 2850
141 South_Africa 27535 C 2854 2844
142 South_Africa 27536 C 2853 2843
143 South_Africa 27537 T 2854 2844
144 South_Africa 27538 C 2853 2843
145 South_Africa 27539 T 2852 2841
146 South_Africa 27540 A 2852 2841
147 South_Africa 27541 G A 2851 2839 Ala50Thr
148 South_Africa 27542 C A 2847 2831 Ala50Asp
149 South_Africa 27543 T 2844 2831
150 South_Africa 27544 G 2844 2831
151 South_Africa 27545 A 2843 2829
152 South_Africa 27546 T C 2843 2828 Asp51Asp
153 South_Africa 27547 A 2842 2826
154 South_Africa 27548 A 2841 2825
155 South_Africa 27549 C T,A 2841 2822 Asn52Lys-p.Asn52Asn
156 South_Africa 27550 A 2841 2825
157 South_Africa 27551 A 2841 2826
158 South_Africa 27552 A 2841 2826
159 South_Africa 27553 T 2840 2825
160 South_Africa 27554 T 2838 2822
161 South_Africa 27555 T 2820 2804
162 South_Africa 27556 G T 2820 2804 Ala55Ser
163 South_Africa 27557 C 2820 2808
164 South_Africa 27558 A 2820 2808
165 South_Africa 27559 C 2820 2808
166 South_Africa 27560 T 2818 2806
167 South_Africa 27561 G T 2818 2757 Leu56Leu
168 South_Africa 27562 A 2817 2809
169 South_Africa 27563 C 2817 2809
170 South_Africa 27564 T 2817 2809
171 South_Africa 27565 T 2817 2809
172 South_Africa 27566 G 2817 2808
173 South_Africa 27567 C 2817 2809
174 South_Africa 27568 T 2817 2809
175 South_Africa 27569 T 2817 2809
176 South_Africa 27570 T 2817 2809
177 South_Africa 27571 A 2817 2808
178 South_Africa 27572 G 2817 2808
179 South_Africa 27573 C 2817 2805
180 South_Africa 27574 A 2816 2804
181 South_Africa 27575 C 2816 2803
182 South_Africa 27576 T 2816 2804
183 South_Africa 27577 C T 2816 2806 Gln62*
184 South_Africa 27578 A G 2816 2806 Gln62Arg
185 South_Africa 27579 A 2813 2804
186 South_Africa 27580 T 2813 2802
187 South_Africa 27581 T 2813 2802
188 South_Africa 27582 T 2813 2802
189 South_Africa 27583 G 2813 2802
190 South_Africa 27584 C 2813 2801
191 South_Africa 27585 T 2813 2801
192 South_Africa 27586 T 2813 2801
193 South_Africa 27587 T 2813 2801
194 South_Africa 27588 T 2813 2804
195 South_Africa 27589 G 2813 2803
196 South_Africa 27590 C 2813 2804
197 South_Africa 27591 T 2813 2804
198 South_Africa 27592 T 2813 2802
199 South_Africa 27593 G 2813 2802
200 South_Africa 27594 T 2813 2808
201 South_Africa 27595 C 2812 2807
202 South_Africa 27596 C 2811 2806
203 South_Africa 27597 T 2811 2806
204 South_Africa 27598 G 2811 2806
205 South_Africa 27599 A 2811 2806
206 South_Africa 27600 C T 2811 2801 Asp69Asp
207 South_Africa 27601 G 2811 2802
208 South_Africa 27602 G 2811 2805
209 South_Africa 27603 C T 2811 2804 Gly70Gly
210 South_Africa 27604 G 2811 2807
211 South_Africa 27605 T 2811 2807
212 South_Africa 27606 A 2811 2807
213 South_Africa 27607 A 2812 2808
214 South_Africa 27608 A 2811 2807
215 South_Africa 27609 A 2811 2807
216 South_Africa 27610 C 2811 2805
217 South_Africa 27611 A 2811 2803
218 South_Africa 27612 C T 2811 2804 His73His
219 South_Africa 27613 G T 2811 2804 Val74Phe
220 South_Africa 27614 T 2811 2805
221 South_Africa 27615 C 2811 2805
222 South_Africa 27616 T 2811 2806
223 South_Africa 27617 A 2812 2807
224 South_Africa 27618 T 2812 2807
225 South_Africa 27619 C T 2812 2806 Gln76*
226 South_Africa 27620 A 2812 2808
227 South_Africa 27621 G 2812 2808
228 South_Africa 27622 T 2812 2808
229 South_Africa 27623 T 2812 2808
230 South_Africa 27624 A 2812 2808
231 South_Africa 27625 C 2811 2804
232 South_Africa 27626 G 2811 2803
233 South_Africa 27627 T 2811 2804
234 South_Africa 27628 G T 2811 2802 Ala79Ser
235 South_Africa 27629 C 2810 2801
236 South_Africa 27630 C T 2809 2792 Ala79Ala
237 South_Africa 27631 A 2809 2799
238 South_Africa 27632 G T 2809 2801 Arg80Ile
239 South_Africa 27633 A 2808 2801
240 South_Africa 27634 T 2809 2802
241 South_Africa 27635 C 2809 2798
242 South_Africa 27636 A 2806 2793
243 South_Africa 27637 G 2806 2795
244 South_Africa 27638 T 2806 2795
245 South_Africa 27639 T 2806 2795
246 South_Africa 27640 T 2806 2794
247 South_Africa 27641 C 2806 2804
248 South_Africa 27642 A 2806 2804
249 South_Africa 27643 C 2806 2804
250 South_Africa 27644 C T 2806 2803 Pro84Leu
251 South_Africa 27645 T C 2806 2800 Pro84Pro
252 South_Africa 27646 A 2806 2804
253 South_Africa 27647 A 2806 2804
254 South_Africa 27648 A 2806 2804
255 South_Africa 27649 C 2805 2803
256 South_Africa 27650 T 2803 2798
257 South_Africa 27651 G A 2803 2798 Leu86Leu
258 South_Africa 27652 T 2802 2800
259 South_Africa 27653 T 2802 2801
260 South_Africa 27654 C T 2802 2799 Phe87Phe
261 South_Africa 27655 A 2802 2802
262 South_Africa 27656 T 2802 2802
263 South_Africa 27657 C 2802 2802
264 South_Africa 27658 A 2802 2802
265 South_Africa 27659 G T 2802 2799 Arg89Ile
266 South_Africa 27660 A 2802 2802
267 South_Africa 27661 C 2802 2802
268 South_Africa 27662 A 2802 2802
269 South_Africa 27663 A 2802 2802
270 South_Africa 27664 G 2802 2802
271 South_Africa 27665 A 2802 2802
272 South_Africa 27666 G 2802 2802
273 South_Africa 27667 G 2802 2802
274 South_Africa 27668 A 2802 2802
275 South_Africa 27669 A C,G 2802 2795 Glu92Asp-p.Glu92Glu
276 South_Africa 27670 G T 2802 2794 Val93Phe
277 South_Africa 27671 T 2802 2802
278 South_Africa 27672 T 2802 2802
279 South_Africa 27673 C 2802 2801
280 South_Africa 27674 A 2802 2801
281 South_Africa 27675 A G,C 2802 2798 Gln94His-p.Gln94Gln
282 South_Africa 27676 G T 2802 2800 Glu95*
283 South_Africa 27677 A 2801 2801
284 South_Africa 27678 A 2801 2801
285 South_Africa 27679 C T 2801 2799 Leu96Phe
286 South_Africa 27680 T 2801 2799
287 South_Africa 27681 T 2801 2800
288 South_Africa 27682 T 2801 2800
289 South_Africa 27683 A T 2801 2799 Tyr97Phe
290 South_Africa 27684 C 2800 2798
291 South_Africa 27685 T 2798 2797
292 South_Africa 27686 C 2798 2796
293 South_Africa 27687 T 2797 2795
294 South_Africa 27688 C 2797 2795
295 South_Africa 27689 C 2797 2795
296 South_Africa 27690 A T 2797 2794 Pro99Pro
297 South_Africa 27691 A 2797 2795
298 South_Africa 27692 T 2797 2795
299 South_Africa 27693 T 2797 2795
300 South_Africa 27694 T 2797 2795
301 South_Africa 27695 T 2797 2795
302 South_Africa 27696 T 2796 2794
303 South_Africa 27697 C 2796 2795
304 South_Africa 27698 T 2796 2795
305 South_Africa 27699 T 2796 2795
306 South_Africa 27700 A 2796 2795
307 South_Africa 27701 T 2796 2795
308 South_Africa 27702 T 2796 2795
309 South_Africa 27703 G 2796 2796
310 South_Africa 27704 T 2796 2795
311 South_Africa 27705 T 2796 2795
312 South_Africa 27706 G 2796 2794
313 South_Africa 27707 C 2796 2794
314 South_Africa 27708 G T 2796 2793 Ala105Ala
315 South_Africa 27709 G 2796 2795
316 South_Africa 27710 C 2795 2793
317 South_Africa 27711 A 2795 2793
318 South_Africa 27712 A 2795 2793
319 South_Africa 27713 T 2795 2793
320 South_Africa 27714 A 2795 2792
321 South_Africa 27715 G 2795 2790
322 South_Africa 27716 T 2793 2790
323 South_Africa 27717 G 2793 2792
324 South_Africa 27718 T 2793 2791
325 South_Africa 27719 T 2793 2793
326 South_Africa 27720 T 2792 2792
327 South_Africa 27721 A 2792 2792
328 South_Africa 27722 T 2791 2791
329 South_Africa 27723 A 2791 2791
330 South_Africa 27724 A 2791 2791
331 South_Africa 27725 C 2791 2790
332 South_Africa 27726 A 2786 2785
333 South_Africa 27727 C 2786 2785
334 South_Africa 27728 T 2785 2784
335 South_Africa 27729 T 2785 2784
336 South_Africa 27730 T 2785 2784
337 South_Africa 27731 G 2785 2784
338 South_Africa 27732 C 2785 2784
339 South_Africa 27733 T 2784 2783
340 South_Africa 27734 T 2784 2783
341 South_Africa 27735 C 2784 2783
342 South_Africa 27736 A G 2784 2782 Thr115Ala
343 South_Africa 27737 C 2784 2783
344 South_Africa 27738 A 2784 2783
345 South_Africa 27739 C T 2784 2782 Leu116Phe
346 South_Africa 27740 T 2784 2784
347 South_Africa 27741 C T 2784 2780 Leu116Leu
348 South_Africa 27742 A 2784 2784
349 South_Africa 27743 A 2784 2784
350 South_Africa 27744 A 2784 2784
351 South_Africa 27745 A 2782 2782
352 South_Africa 27746 G 2782 2782
353 South_Africa 27747 A T 2782 2781 Arg118Ser
354 South_Africa 27748 A 2781 2781
355 South_Africa 27749 A 2781 2781
356 South_Africa 27750 G T 2781 2780 Lys119Asn
357 South_Africa 27751 A 2781 2781
358 South_Africa 27752 C T 2781 2780 Thr120Ile
359 South_Africa 27753 A C 2780 2771 Thr120Thr
360 South_Africa 27754 G T 2780 2779 Glu121*
361 South_Africa 27755 A 2780 2780
362 South_Africa 27756 A G 2780 2779 -p.Met1?
363 South_Africa 27757 T C 2780 2779 -p.Ter122Argext*?
364 South_Africa 27758 G 2780 2780
365 South_Africa 27759 A 2779 2779