National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                   1                  
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                           1          
R     15               1                      
S     21                                      
T     30                                      
V     24                                      
Y     15             1                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 27394 A 96 96
1 Slovakia 27395 T 96 96
2 Slovakia 27396 G 96 96
3 Slovakia 27397 A 96 96
4 Slovakia 27398 A 96 96
5 Slovakia 27399 A 96 96
6 Slovakia 27400 A 96 96
7 Slovakia 27401 T 96 96
8 Slovakia 27402 T 96 96
9 Slovakia 27403 A 96 96
10 Slovakia 27404 T 96 96
11 Slovakia 27405 T 96 96
12 Slovakia 27406 C 96 96
13 Slovakia 27407 T 96 96
14 Slovakia 27408 T 96 96
15 Slovakia 27409 T C 96 85 Phe6Leu
16 Slovakia 27410 T 96 96
17 Slovakia 27411 C 96 96
18 Slovakia 27412 T 96 96
19 Slovakia 27413 T 96 96
20 Slovakia 27414 G 96 96
21 Slovakia 27415 G 96 96
22 Slovakia 27416 C 96 96
23 Slovakia 27417 A 96 96
24 Slovakia 27418 C 96 96
25 Slovakia 27419 T 96 96
26 Slovakia 27420 G 96 96
27 Slovakia 27421 A 96 96
28 Slovakia 27422 T 96 96
29 Slovakia 27423 A 96 96
30 Slovakia 27424 A 96 96
31 Slovakia 27425 C 96 96
32 Slovakia 27426 A 96 96
33 Slovakia 27427 C 96 96
34 Slovakia 27428 T 96 96
35 Slovakia 27429 C 96 96
36 Slovakia 27430 G 96 96
37 Slovakia 27431 C 96 96
38 Slovakia 27432 T 96 96
39 Slovakia 27433 A 96 96
40 Slovakia 27434 C 96 96
41 Slovakia 27435 T 96 96
42 Slovakia 27436 T 96 96
43 Slovakia 27437 G 96 96
44 Slovakia 27438 T 96 96
45 Slovakia 27439 G 96 96
46 Slovakia 27440 A 96 96
47 Slovakia 27441 G 96 96
48 Slovakia 27442 C 96 96
49 Slovakia 27443 T 96 96
50 Slovakia 27444 T 96 96
51 Slovakia 27445 T 96 96
52 Slovakia 27446 A 96 96
53 Slovakia 27447 T 96 96
54 Slovakia 27448 C 96 96
55 Slovakia 27449 A 96 96
56 Slovakia 27450 C 96 96
57 Slovakia 27451 T 96 96
58 Slovakia 27452 A 96 96
59 Slovakia 27453 C 96 96
60 Slovakia 27454 C 96 96
61 Slovakia 27455 A 96 96
62 Slovakia 27456 A 96 96
63 Slovakia 27457 G 96 96
64 Slovakia 27458 A 96 96
65 Slovakia 27459 G 96 96
66 Slovakia 27460 T 96 96
67 Slovakia 27461 G 96 96
68 Slovakia 27462 T 96 96
69 Slovakia 27463 G 96 96
70 Slovakia 27464 T 96 96
71 Slovakia 27465 T 96 96
72 Slovakia 27466 A 96 96
73 Slovakia 27467 G T 96 95 Arg25Ile
74 Slovakia 27468 A 96 96
75 Slovakia 27469 G 96 96
76 Slovakia 27470 G 96 96
77 Slovakia 27471 T 96 96
78 Slovakia 27472 A 96 96
79 Slovakia 27473 C 96 96
80 Slovakia 27474 A 96 96
81 Slovakia 27475 A 96 96
82 Slovakia 27476 C 96 96
83 Slovakia 27477 A 96 96
84 Slovakia 27478 G 96 96
85 Slovakia 27479 T 96 96
86 Slovakia 27480 A 96 96
87 Slovakia 27481 C 96 96
88 Slovakia 27482 T 96 96
89 Slovakia 27483 T 96 96
90 Slovakia 27484 T 96 96
91 Slovakia 27485 T 96 96
92 Slovakia 27486 A 96 96
93 Slovakia 27487 A 96 96
94 Slovakia 27488 A 96 96
95 Slovakia 27489 A 96 96
96 Slovakia 27490 G 96 96
97 Slovakia 27491 A 96 96
98 Slovakia 27492 A 96 96
99 Slovakia 27493 C 96 96
100 Slovakia 27494 C 96 96
101 Slovakia 27495 T 96 96
102 Slovakia 27496 T 96 96
103 Slovakia 27497 G 96 96
104 Slovakia 27498 C 96 96
105 Slovakia 27499 T 96 96
106 Slovakia 27500 C 96 96
107 Slovakia 27501 T 96 96
108 Slovakia 27502 T 96 96
109 Slovakia 27503 C 96 96
110 Slovakia 27504 T 96 96
111 Slovakia 27505 G 96 96
112 Slovakia 27506 G 96 96
113 Slovakia 27507 A 96 96
114 Slovakia 27508 A 96 96
115 Slovakia 27509 C 96 96
116 Slovakia 27510 A 96 96
117 Slovakia 27511 T 96 96
118 Slovakia 27512 A 96 96
119 Slovakia 27513 C 96 96
120 Slovakia 27514 G 96 96
121 Slovakia 27515 A 96 96
122 Slovakia 27516 G 96 96
123 Slovakia 27517 G 96 96
124 Slovakia 27518 G 96 96
125 Slovakia 27519 C 96 96
126 Slovakia 27520 A 96 96
127 Slovakia 27521 A 96 96
128 Slovakia 27522 T 96 96
129 Slovakia 27523 T 96 96
130 Slovakia 27524 C 96 96
131 Slovakia 27525 A 96 96
132 Slovakia 27526 C 96 96
133 Slovakia 27527 C 96 96
134 Slovakia 27528 A 96 96
135 Slovakia 27529 T 96 96
136 Slovakia 27530 T 96 96
137 Slovakia 27531 T 96 96
138 Slovakia 27532 C 96 96
139 Slovakia 27533 A 96 96
140 Slovakia 27534 T 96 96
141 Slovakia 27535 C 96 96
142 Slovakia 27536 C 96 96
143 Slovakia 27537 T 96 96
144 Slovakia 27538 C 96 96
145 Slovakia 27539 T 96 96
146 Slovakia 27540 A 96 96
147 Slovakia 27541 G 96 96
148 Slovakia 27542 C 96 96
149 Slovakia 27543 T 96 96
150 Slovakia 27544 G 96 96
151 Slovakia 27545 A 96 96
152 Slovakia 27546 T 96 96
153 Slovakia 27547 A 96 96
154 Slovakia 27548 A 96 96
155 Slovakia 27549 C 96 96
156 Slovakia 27550 A 96 96
157 Slovakia 27551 A 96 96
158 Slovakia 27552 A 96 96
159 Slovakia 27553 T 96 96
160 Slovakia 27554 T 96 96
161 Slovakia 27555 T 96 96
162 Slovakia 27556 G 96 96
163 Slovakia 27557 C 96 96
164 Slovakia 27558 A 96 96
165 Slovakia 27559 C 96 96
166 Slovakia 27560 T 96 96
167 Slovakia 27561 G 96 96
168 Slovakia 27562 A 96 96
169 Slovakia 27563 C 96 96
170 Slovakia 27564 T 96 96
171 Slovakia 27565 T 96 96
172 Slovakia 27566 G 96 96
173 Slovakia 27567 C 96 96
174 Slovakia 27568 T 96 96
175 Slovakia 27569 T 96 96
176 Slovakia 27570 T 96 96
177 Slovakia 27571 A 96 96
178 Slovakia 27572 G 96 96
179 Slovakia 27573 C 96 96
180 Slovakia 27574 A 96 96
181 Slovakia 27575 C 96 96
182 Slovakia 27576 T 96 96
183 Slovakia 27577 C 96 96
184 Slovakia 27578 A 96 96
185 Slovakia 27579 A G 96 95 Gln62Gln
186 Slovakia 27580 T 96 96
187 Slovakia 27581 T 96 96
188 Slovakia 27582 T 96 96
189 Slovakia 27583 G 96 96
190 Slovakia 27584 C 96 96
191 Slovakia 27585 T 96 96
192 Slovakia 27586 T 96 96
193 Slovakia 27587 T 96 96
194 Slovakia 27588 T 96 96
195 Slovakia 27589 G 96 96
196 Slovakia 27590 C 96 96
197 Slovakia 27591 T 96 96
198 Slovakia 27592 T 96 96
199 Slovakia 27593 G 96 96
200 Slovakia 27594 T 96 96
201 Slovakia 27595 C 96 96
202 Slovakia 27596 C 96 96
203 Slovakia 27597 T 96 96
204 Slovakia 27598 G 96 96
205 Slovakia 27599 A 96 96
206 Slovakia 27600 C 96 96
207 Slovakia 27601 G 96 96
208 Slovakia 27602 G 96 96
209 Slovakia 27603 C 96 96
210 Slovakia 27604 G 96 96
211 Slovakia 27605 T 96 96
212 Slovakia 27606 A 96 96
213 Slovakia 27607 A 96 96
214 Slovakia 27608 A 96 96
215 Slovakia 27609 A 96 96
216 Slovakia 27610 C 96 96
217 Slovakia 27611 A 96 96
218 Slovakia 27612 C 96 96
219 Slovakia 27613 G 96 96
220 Slovakia 27614 T 96 96
221 Slovakia 27615 C 96 96
222 Slovakia 27616 T C 96 91 Tyr75His
223 Slovakia 27617 A 96 96
224 Slovakia 27618 T 96 96
225 Slovakia 27619 C 96 96
226 Slovakia 27620 A 96 96
227 Slovakia 27621 G 96 96
228 Slovakia 27622 T 96 96
229 Slovakia 27623 T 96 96
230 Slovakia 27624 A 96 96
231 Slovakia 27625 C 96 96
232 Slovakia 27626 G 96 96
233 Slovakia 27627 T 96 96
234 Slovakia 27628 G 96 96
235 Slovakia 27629 C 96 96
236 Slovakia 27630 C 96 96
237 Slovakia 27631 A 96 96
238 Slovakia 27632 G 96 96
239 Slovakia 27633 A 96 96
240 Slovakia 27634 T 96 96
241 Slovakia 27635 C 96 96
242 Slovakia 27636 A 96 96
243 Slovakia 27637 G 96 96
244 Slovakia 27638 T 96 96
245 Slovakia 27639 T 96 96
246 Slovakia 27640 T 96 96
247 Slovakia 27641 C 96 96
248 Slovakia 27642 A 96 96
249 Slovakia 27643 C 96 96
250 Slovakia 27644 C 96 96
251 Slovakia 27645 T 96 96
252 Slovakia 27646 A 96 96
253 Slovakia 27647 A 96 96
254 Slovakia 27648 A 96 96
255 Slovakia 27649 C 96 96
256 Slovakia 27650 T 96 96
257 Slovakia 27651 G 96 96
258 Slovakia 27652 T 96 96
259 Slovakia 27653 T 96 96
260 Slovakia 27654 C 96 96
261 Slovakia 27655 A 96 96
262 Slovakia 27656 T 96 96
263 Slovakia 27657 C 96 96
264 Slovakia 27658 A 96 96
265 Slovakia 27659 G 96 96
266 Slovakia 27660 A 96 96
267 Slovakia 27661 C 96 96
268 Slovakia 27662 A 96 96
269 Slovakia 27663 A 96 96
270 Slovakia 27664 G 96 96
271 Slovakia 27665 A 96 96
272 Slovakia 27666 G 96 96
273 Slovakia 27667 G 96 96
274 Slovakia 27668 A 96 96
275 Slovakia 27669 A 96 96
276 Slovakia 27670 G 96 96
277 Slovakia 27671 T 96 96
278 Slovakia 27672 T 96 96
279 Slovakia 27673 C 96 96
280 Slovakia 27674 A 96 96
281 Slovakia 27675 A 96 96
282 Slovakia 27676 G 96 96
283 Slovakia 27677 A 96 96
284 Slovakia 27678 A 96 96
285 Slovakia 27679 C 96 96
286 Slovakia 27680 T 96 96
287 Slovakia 27681 T 96 96
288 Slovakia 27682 T 96 96
289 Slovakia 27683 A 96 96
290 Slovakia 27684 C 96 96
291 Slovakia 27685 T 96 96
292 Slovakia 27686 C 96 96
293 Slovakia 27687 T 96 96
294 Slovakia 27688 C 96 96
295 Slovakia 27689 C 96 96
296 Slovakia 27690 A 96 96
297 Slovakia 27691 A 96 96
298 Slovakia 27692 T 96 96
299 Slovakia 27693 T 96 96
300 Slovakia 27694 T 96 96
301 Slovakia 27695 T 96 96
302 Slovakia 27696 T 96 96
303 Slovakia 27697 C 96 96
304 Slovakia 27698 T 96 96
305 Slovakia 27699 T 96 96
306 Slovakia 27700 A 96 96
307 Slovakia 27701 T 96 96
308 Slovakia 27702 T 96 96
309 Slovakia 27703 G 96 96
310 Slovakia 27704 T 96 96
311 Slovakia 27705 T 96 96
312 Slovakia 27706 G 96 96
313 Slovakia 27707 C 96 96
314 Slovakia 27708 G 96 96
315 Slovakia 27709 G 96 96
316 Slovakia 27710 C 96 96
317 Slovakia 27711 A 96 96
318 Slovakia 27712 A 96 96
319 Slovakia 27713 T 96 96
320 Slovakia 27714 A 96 96
321 Slovakia 27715 G 96 96
322 Slovakia 27716 T 96 96
323 Slovakia 27717 G 96 96
324 Slovakia 27718 T 96 96
325 Slovakia 27719 T 96 96
326 Slovakia 27720 T 96 96
327 Slovakia 27721 A 96 96
328 Slovakia 27722 T 96 96
329 Slovakia 27723 A 96 96
330 Slovakia 27724 A 96 96
331 Slovakia 27725 C 96 96
332 Slovakia 27726 A 96 96
333 Slovakia 27727 C 96 96
334 Slovakia 27728 T 96 96
335 Slovakia 27729 T 96 96
336 Slovakia 27730 T 96 96
337 Slovakia 27731 G 96 96
338 Slovakia 27732 C 96 96
339 Slovakia 27733 T 96 96
340 Slovakia 27734 T 96 96
341 Slovakia 27735 C 96 96
342 Slovakia 27736 A 96 96
343 Slovakia 27737 C 96 96
344 Slovakia 27738 A 96 96
345 Slovakia 27739 C 96 96
346 Slovakia 27740 T 96 96
347 Slovakia 27741 C 96 96
348 Slovakia 27742 A 96 96
349 Slovakia 27743 A 96 96
350 Slovakia 27744 A 96 96
351 Slovakia 27745 A 96 96
352 Slovakia 27746 G 96 96
353 Slovakia 27747 A 96 96
354 Slovakia 27748 A 96 96
355 Slovakia 27749 A 96 96
356 Slovakia 27750 G 96 96
357 Slovakia 27751 A 96 96
358 Slovakia 27752 C 96 96
359 Slovakia 27753 A 96 96
360 Slovakia 27754 G 96 96
361 Slovakia 27755 A 96 96
362 Slovakia 27756 A 96 96
363 Slovakia 27757 T 96 96
364 Slovakia 27758 G 96 96
365 Slovakia 27759 A 96 96