National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1     1                       3 3 2  
C     18                                      
D     6     1                                
E 1   24 1   1 1                              
F     30         1         2                  
G     12           1                       1  
H     9                                     1
I     25               2                      
K     21               1 1               1    
L     45         1         4                  
M     6                                      
N     6                       1              
P     18                   1     1            
Q 1   15             1             2          
R     15               2                 1    
S     21           1       1     1            
T     30 1             2                      
V     24               1   1                  
Y     15             1                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 27394 A 1731 1731
1 Singapore 27395 T 1731 1731
2 Singapore 27396 G 1731 1731
3 Singapore 27397 A 1731 1731
4 Singapore 27398 A 1731 1731
5 Singapore 27399 A 1731 1731
6 Singapore 27400 A 1731 1731
7 Singapore 27401 T 1731 1731
8 Singapore 27402 T 1731 1731
9 Singapore 27403 A 1731 1731
10 Singapore 27404 T 1731 1731
11 Singapore 27405 T C 1731 1729 Ile4Ile
12 Singapore 27406 C 1731 1731
13 Singapore 27407 T 1731 1731
14 Singapore 27408 T 1731 1731
15 Singapore 27409 T 1731 1731
16 Singapore 27410 T 1731 1731
17 Singapore 27411 C 1731 1731
18 Singapore 27412 T 1731 1731
19 Singapore 27413 T 1731 1731
20 Singapore 27414 G 1731 1731
21 Singapore 27415 G A 1731 1718 Ala8Thr
22 Singapore 27416 C A,T 1731 1723 Ala8Glu-p.Ala8Val
23 Singapore 27417 A 1731 1731
24 Singapore 27418 C 1731 1731
25 Singapore 27419 T 1731 1731
26 Singapore 27420 G 1731 1731
27 Singapore 27421 A 1731 1731
28 Singapore 27422 T 1731 1731
29 Singapore 27423 A 1731 1731
30 Singapore 27424 A 1731 1731
31 Singapore 27425 C 1731 1731
32 Singapore 27426 A 1731 1731
33 Singapore 27427 C 1731 1731
34 Singapore 27428 T 1731 1731
35 Singapore 27429 C 1731 1731
36 Singapore 27430 G A 1731 1728 Ala13Thr
37 Singapore 27431 C 1731 1731
38 Singapore 27432 T 1731 1731
39 Singapore 27433 A 1731 1731
40 Singapore 27434 C 1731 1729
41 Singapore 27435 T 1731 1731
42 Singapore 27436 T 1731 1731
43 Singapore 27437 G 1731 1731
44 Singapore 27438 T 1731 1731
45 Singapore 27439 G 1731 1731
46 Singapore 27440 A C 1731 1730 Glu16Ala
47 Singapore 27441 G 1731 1731
48 Singapore 27442 C 1731 1731
49 Singapore 27443 T 1731 1731
50 Singapore 27444 T 1731 1731
51 Singapore 27445 T 1731 1731
52 Singapore 27446 A 1731 1731
53 Singapore 27447 T 1731 1731
54 Singapore 27448 C 1731 1731
55 Singapore 27449 A 1731 1731
56 Singapore 27450 C 1731 1731
57 Singapore 27451 T 1731 1731
58 Singapore 27452 A 1731 1731
59 Singapore 27453 C 1731 1731
60 Singapore 27454 C 1731 1731
61 Singapore 27455 A 1731 1731
62 Singapore 27456 A 1731 1731
63 Singapore 27457 G 1731 1731
64 Singapore 27458 A 1731 1731
65 Singapore 27459 G T 1731 1730 Glu22Asp
66 Singapore 27460 T 1731 1731
67 Singapore 27461 G 1731 1731
68 Singapore 27462 T 1731 1731
69 Singapore 27463 G 1731 1731
70 Singapore 27464 T 1731 1731
71 Singapore 27465 T 1731 1731
72 Singapore 27466 A 1731 1731
73 Singapore 27467 G C 1731 1730 Arg25Thr
74 Singapore 27468 A 1731 1731
75 Singapore 27469 G 1731 1731
76 Singapore 27470 G 1731 1731
77 Singapore 27471 T 1731 1731
78 Singapore 27472 A 1731 1731
79 Singapore 27473 C 1731 1731
80 Singapore 27474 A 1731 1731
81 Singapore 27475 A 1731 1731
82 Singapore 27476 C 1731 1731
83 Singapore 27477 A 1731 1731
84 Singapore 27478 G A 1731 1730 Val29Ile
85 Singapore 27479 T 1731 1731
86 Singapore 27480 A 1731 1731
87 Singapore 27481 C 1731 1731
88 Singapore 27482 T 1731 1731
89 Singapore 27483 T 1731 1731
90 Singapore 27484 T 1731 1731
91 Singapore 27485 T 1731 1731
92 Singapore 27486 A G 1731 1730 Leu31Leu
93 Singapore 27487 A 1731 1731
94 Singapore 27488 A 1731 1731
95 Singapore 27489 A G 1731 1730 Lys32Lys
96 Singapore 27490 G 1731 1731
97 Singapore 27491 A 1731 1730
98 Singapore 27492 A 1731 1731
99 Singapore 27493 C 1731 1730
100 Singapore 27494 C 1731 1730
101 Singapore 27495 T 1731 1731
102 Singapore 27496 T 1731 1731
103 Singapore 27497 G 1731 1731
104 Singapore 27498 C 1731 1731
105 Singapore 27499 T C 1731 1726 Ser36Pro
106 Singapore 27500 C 1731 1731
107 Singapore 27501 T 1731 1731
108 Singapore 27502 T 1731 1731
109 Singapore 27503 C 1731 1731
110 Singapore 27504 T 1731 1731
111 Singapore 27505 G 1731 1731
112 Singapore 27506 G T 1731 1730 Gly38Val
113 Singapore 27507 A 1731 1731
114 Singapore 27508 A 1730 1730
115 Singapore 27509 C 1730 1730
116 Singapore 27510 A 1730 1730
117 Singapore 27511 T 1730 1730
118 Singapore 27512 A 1730 1730
119 Singapore 27513 C T 1730 1726 Tyr40Tyr
120 Singapore 27514 G 1730 1729
121 Singapore 27515 A 1730 1729
122 Singapore 27516 G A 1730 1728 Glu41Glu
123 Singapore 27517 G 1730 1729
124 Singapore 27518 G 1730 1729
125 Singapore 27519 C 1730 1729
126 Singapore 27520 A 1730 1729
127 Singapore 27521 A 1730 1729
128 Singapore 27522 T 1730 1729
129 Singapore 27523 T 1730 1729
130 Singapore 27524 C 1730 1729
131 Singapore 27525 A 1730 1729
132 Singapore 27526 C 1730 1729
133 Singapore 27527 C 1730 1729
134 Singapore 27528 A 1730 1729
135 Singapore 27529 T 1730 1729
136 Singapore 27530 T 1730 1729
137 Singapore 27531 T 1730 1729
138 Singapore 27532 C T 1730 1728 His47Tyr
139 Singapore 27533 A 1730 1728
140 Singapore 27534 T 1730 1728
141 Singapore 27535 C 1730 1729
142 Singapore 27536 C 1730 1729
143 Singapore 27537 T 1730 1729
144 Singapore 27538 C T 1730 1728 Leu49Leu
145 Singapore 27539 T 1730 1730
146 Singapore 27540 A 1730 1730
147 Singapore 27541 G T 1730 1729 Ala50Ser
148 Singapore 27542 C T 1730 1729 Ala50Val
149 Singapore 27543 T 1730 1730
150 Singapore 27544 G 1730 1730
151 Singapore 27545 A 1730 1730
152 Singapore 27546 T 1730 1730
153 Singapore 27547 A 1730 1730
154 Singapore 27548 A 1730 1730
155 Singapore 27549 C T 1730 1728 Asn52Asn
156 Singapore 27550 A 1730 1730
157 Singapore 27551 A 1730 1730
158 Singapore 27552 A 1730 1730
159 Singapore 27553 T 1730 1730
160 Singapore 27554 T 1730 1730
161 Singapore 27555 T 1730 1730
162 Singapore 27556 G 1730 1730
163 Singapore 27557 C 1730 1730
164 Singapore 27558 A 1730 1730
165 Singapore 27559 C 1730 1730
166 Singapore 27560 T 1730 1729
167 Singapore 27561 G 1730 1730
168 Singapore 27562 A 1730 1730
169 Singapore 27563 C 1730 1730
170 Singapore 27564 T 1730 1730
171 Singapore 27565 T 1730 1730
172 Singapore 27566 G 1730 1730
173 Singapore 27567 C 1730 1730
174 Singapore 27568 T 1730 1730
175 Singapore 27569 T 1730 1730
176 Singapore 27570 T 1730 1730
177 Singapore 27571 A G 1730 1729 Ser60Gly
178 Singapore 27572 G 1730 1730
179 Singapore 27573 C 1730 1730
180 Singapore 27574 A 1730 1730
181 Singapore 27575 C T 1730 1729 Thr61Ile
182 Singapore 27576 T 1730 1730
183 Singapore 27577 C T 1730 1727 Gln62*
184 Singapore 27578 A 1730 1730
185 Singapore 27579 A G 1730 1728 Gln62Gln
186 Singapore 27580 T C 1730 1729 Phe63Leu
187 Singapore 27581 T 1730 1730
188 Singapore 27582 T 1730 1730
189 Singapore 27583 G 1730 1730
190 Singapore 27584 C 1730 1730
191 Singapore 27585 T 1730 1729
192 Singapore 27586 T 1730 1729
193 Singapore 27587 T 1730 1729
194 Singapore 27588 T A 1730 1703 Phe65Leu
195 Singapore 27589 G T 1730 1728 Ala66Ser
196 Singapore 27590 C 1730 1729
197 Singapore 27591 T 1730 1729
198 Singapore 27592 T 1730 1729
199 Singapore 27593 G 1730 1729
200 Singapore 27594 T 1730 1729
201 Singapore 27595 C 1730 1729
202 Singapore 27596 C T 1730 1728 Pro68Leu
203 Singapore 27597 T 1730 1729
204 Singapore 27598 G 1730 1729
205 Singapore 27599 A 1730 1729
206 Singapore 27600 C T 1730 1722 Asp69Asp
207 Singapore 27601 G 1730 1729
208 Singapore 27602 G 1730 1729
209 Singapore 27603 C T 1730 1727 Gly70Gly
210 Singapore 27604 G 1730 1729
211 Singapore 27605 T 1730 1729
212 Singapore 27606 A 1730 1729
213 Singapore 27607 A 1730 1729
214 Singapore 27608 A C 1730 1728 Lys72Thr
215 Singapore 27609 A 1730 1729
216 Singapore 27610 C 1730 1729
217 Singapore 27611 A 1730 1729
218 Singapore 27612 C 1730 1729
219 Singapore 27613 G 1730 1729
220 Singapore 27614 T 1730 1729
221 Singapore 27615 C 1730 1729
222 Singapore 27616 T 1730 1729
223 Singapore 27617 A 1730 1729
224 Singapore 27618 T 1730 1730
225 Singapore 27619 C 1730 1730
226 Singapore 27620 A 1730 1730
227 Singapore 27621 G 1730 1730
228 Singapore 27622 T 1730 1730
229 Singapore 27623 T 1730 1730
230 Singapore 27624 A G 1730 1729 Leu77Leu
231 Singapore 27625 C 1730 1730
232 Singapore 27626 G 1730 1730
233 Singapore 27627 T 1730 1730
234 Singapore 27628 G 1730 1730
235 Singapore 27629 C 1730 1729
236 Singapore 27630 C T 1730 1726 Ala79Ala
237 Singapore 27631 A 1730 1730
238 Singapore 27632 G T 1730 1729 Arg80Ile
239 Singapore 27633 A 1730 1730
240 Singapore 27634 T 1730 1730
241 Singapore 27635 C T 1730 1723 Ser81Leu
242 Singapore 27636 A 1730 1730
243 Singapore 27637 G 1730 1730
244 Singapore 27638 T 1730 1730
245 Singapore 27639 T 1730 1730
246 Singapore 27640 T 1730 1730
247 Singapore 27641 C 1730 1730
248 Singapore 27642 A 1730 1730
249 Singapore 27643 C 1730 1730
250 Singapore 27644 C 1730 1730
251 Singapore 27645 T C 1730 1729 Pro84Pro
252 Singapore 27646 A 1730 1730
253 Singapore 27647 A T 1730 1728 Lys85Ile
254 Singapore 27648 A 1730 1730
255 Singapore 27649 C 1730 1730
256 Singapore 27650 T 1730 1730
257 Singapore 27651 G 1730 1730
258 Singapore 27652 T 1730 1730
259 Singapore 27653 T 1730 1730
260 Singapore 27654 C T 1730 1729 Phe87Phe
261 Singapore 27655 A 1730 1730
262 Singapore 27656 T 1730 1730
263 Singapore 27657 C T 1730 1728 Ile88Ile
264 Singapore 27658 A 1730 1730
265 Singapore 27659 G 1730 1730
266 Singapore 27660 A 1730 1730
267 Singapore 27661 C 1730 1730
268 Singapore 27662 A 1730 1730
269 Singapore 27663 A G 1730 1721 Gln90Gln
270 Singapore 27664 G 1730 1730
271 Singapore 27665 A 1730 1730
272 Singapore 27666 G 1730 1730
273 Singapore 27667 G 1730 1730
274 Singapore 27668 A 1730 1730
275 Singapore 27669 A 1730 1730
276 Singapore 27670 G 1730 1730
277 Singapore 27671 T 1730 1730
278 Singapore 27672 T 1730 1730
279 Singapore 27673 C 1730 1730
280 Singapore 27674 A 1730 1730
281 Singapore 27675 A C 1730 1728 Gln94His
282 Singapore 27676 G 1730 1730
283 Singapore 27677 A 1730 1730
284 Singapore 27678 A 1730 1730
285 Singapore 27679 C T 1730 1729 Leu96Phe
286 Singapore 27680 T 1730 1730
287 Singapore 27681 T 1730 1730
288 Singapore 27682 T C 1730 1729 Tyr97His
289 Singapore 27683 A 1730 1730
290 Singapore 27684 C 1730 1730
291 Singapore 27685 T 1730 1730
292 Singapore 27686 C 1730 1730
293 Singapore 27687 T 1730 1730
294 Singapore 27688 C 1730 1730
295 Singapore 27689 C 1730 1730
296 Singapore 27690 A 1730 1730
297 Singapore 27691 A 1730 1730
298 Singapore 27692 T 1730 1730
299 Singapore 27693 T 1730 1730
300 Singapore 27694 T 1730 1730
301 Singapore 27695 T 1730 1730
302 Singapore 27696 T 1730 1730
303 Singapore 27697 C 1730 1730
304 Singapore 27698 T 1730 1730
305 Singapore 27699 T 1730 1730
306 Singapore 27700 A 1730 1730
307 Singapore 27701 T 1730 1730
308 Singapore 27702 T 1730 1730
309 Singapore 27703 G 1730 1730
310 Singapore 27704 T 1730 1730
311 Singapore 27705 T 1730 1730
312 Singapore 27706 G T,A 1730 1728 Ala105Ser-p.Ala105Thr
313 Singapore 27707 C 1730 1730
314 Singapore 27708 G 1730 1730
315 Singapore 27709 G 1730 1730
316 Singapore 27710 C 1730 1730
317 Singapore 27711 A 1730 1730
318 Singapore 27712 A 1730 1730
319 Singapore 27713 T 1730 1730
320 Singapore 27714 A 1730 1730
321 Singapore 27715 G T 1730 1728 Val108Leu
322 Singapore 27716 T 1730 1730
323 Singapore 27717 G 1730 1730
324 Singapore 27718 T 1730 1730
325 Singapore 27719 T 1729 1729
326 Singapore 27720 T 1729 1729
327 Singapore 27721 A 1729 1729
328 Singapore 27722 T 1729 1728
329 Singapore 27723 A 1729 1729
330 Singapore 27724 A 1729 1729
331 Singapore 27725 C 1729 1729
332 Singapore 27726 A 1729 1729
333 Singapore 27727 C 1729 1729
334 Singapore 27728 T 1729 1729
335 Singapore 27729 T 1729 1729
336 Singapore 27730 T 1729 1729
337 Singapore 27731 G 1729 1729
338 Singapore 27732 C 1729 1729
339 Singapore 27733 T 1729 1729
340 Singapore 27734 T 1729 1729
341 Singapore 27735 C 1729 1729
342 Singapore 27736 A G 1729 1726 Thr115Ala
343 Singapore 27737 C 1729 1729
344 Singapore 27738 A 1729 1728
345 Singapore 27739 C 1729 1728
346 Singapore 27740 T 1729 1729
347 Singapore 27741 C T 1729 1728 Leu116Leu
348 Singapore 27742 A 1729 1729
349 Singapore 27743 A 1729 1729
350 Singapore 27744 A 1729 1729
351 Singapore 27745 A 1729 1729
352 Singapore 27746 G T 1729 1727 Arg118Ile
353 Singapore 27747 A 1729 1728
354 Singapore 27748 A 1729 1729
355 Singapore 27749 A 1729 1729
356 Singapore 27750 G 1729 1729
357 Singapore 27751 A 1729 1729
358 Singapore 27752 C T 1729 1727 Thr120Ile
359 Singapore 27753 A 1729 1729
360 Singapore 27754 G T 1729 1728 Glu121*
361 Singapore 27755 A 1729 1729
362 Singapore 27756 A 1729 1729
363 Singapore 27757 T 1729 1729
364 Singapore 27758 G 1729 1729
365 Singapore 27759 A 1729 1729