National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9             1                        
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                   1                  
S     21                                      
T     30               2                 1    
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Serbia 27394 A 147 147
1 Serbia 27395 T 147 147
2 Serbia 27396 G 147 147
3 Serbia 27397 A 147 147
4 Serbia 27398 A 147 147
5 Serbia 27399 A 147 147
6 Serbia 27400 A 147 147
7 Serbia 27401 T 147 147
8 Serbia 27402 T 147 147
9 Serbia 27403 A 147 147
10 Serbia 27404 T 147 147
11 Serbia 27405 T 147 147
12 Serbia 27406 C 147 147
13 Serbia 27407 T 147 147
14 Serbia 27408 T 147 147
15 Serbia 27409 T 147 147
16 Serbia 27410 T 147 147
17 Serbia 27411 C 147 147
18 Serbia 27412 T 147 147
19 Serbia 27413 T 147 147
20 Serbia 27414 G 147 147
21 Serbia 27415 G 147 147
22 Serbia 27416 C 147 147
23 Serbia 27417 A 147 147
24 Serbia 27418 C 147 147
25 Serbia 27419 T 147 147
26 Serbia 27420 G 147 147
27 Serbia 27421 A 147 147
28 Serbia 27422 T 147 147
29 Serbia 27423 A 147 147
30 Serbia 27424 A 147 147
31 Serbia 27425 C 147 147
32 Serbia 27426 A G 147 146 Thr11Thr
33 Serbia 27427 C 147 147
34 Serbia 27428 T 147 147
35 Serbia 27429 C 147 147
36 Serbia 27430 G 147 147
37 Serbia 27431 C 147 147
38 Serbia 27432 T 147 147
39 Serbia 27433 A 147 147
40 Serbia 27434 C T 147 146 Thr14Ile
41 Serbia 27435 T 147 147
42 Serbia 27436 T 147 147
43 Serbia 27437 G 147 147
44 Serbia 27438 T 147 147
45 Serbia 27439 G 147 147
46 Serbia 27440 A 147 147
47 Serbia 27441 G 147 147
48 Serbia 27442 C 147 147
49 Serbia 27443 T 147 147
50 Serbia 27444 T 147 147
51 Serbia 27445 T 147 147
52 Serbia 27446 A 147 147
53 Serbia 27447 T 147 147
54 Serbia 27448 C 147 147
55 Serbia 27449 A 147 147
56 Serbia 27450 C T 147 145 His19His
57 Serbia 27451 T 147 147
58 Serbia 27452 A 147 147
59 Serbia 27453 C 147 147
60 Serbia 27454 C 147 147
61 Serbia 27455 A 147 147
62 Serbia 27456 A 147 147
63 Serbia 27457 G 147 147
64 Serbia 27458 A 147 147
65 Serbia 27459 G 147 147
66 Serbia 27460 T 147 147
67 Serbia 27461 G 147 147
68 Serbia 27462 T 147 147
69 Serbia 27463 G 147 147
70 Serbia 27464 T 147 147
71 Serbia 27465 T 147 147
72 Serbia 27466 A 147 147
73 Serbia 27467 G 147 147
74 Serbia 27468 A 147 147
75 Serbia 27469 G 147 147
76 Serbia 27470 G 147 147
77 Serbia 27471 T 147 147
78 Serbia 27472 A 147 147
79 Serbia 27473 C 147 147
80 Serbia 27474 A 147 147
81 Serbia 27475 A 147 147
82 Serbia 27476 C 147 147
83 Serbia 27477 A 147 147
84 Serbia 27478 G 147 147
85 Serbia 27479 T 147 147
86 Serbia 27480 A 147 147
87 Serbia 27481 C 147 147
88 Serbia 27482 T 147 147
89 Serbia 27483 T 147 147
90 Serbia 27484 T 147 147
91 Serbia 27485 T 147 147
92 Serbia 27486 A 147 147
93 Serbia 27487 A 147 147
94 Serbia 27488 A 147 147
95 Serbia 27489 A 147 147
96 Serbia 27490 G 147 147
97 Serbia 27491 A 147 147
98 Serbia 27492 A 147 147
99 Serbia 27493 C 147 147
100 Serbia 27494 C 147 147
101 Serbia 27495 T 147 147
102 Serbia 27496 T 147 147
103 Serbia 27497 G 147 147
104 Serbia 27498 C 147 147
105 Serbia 27499 T 147 147
106 Serbia 27500 C 147 147
107 Serbia 27501 T 147 147
108 Serbia 27502 T 147 147
109 Serbia 27503 C 147 147
110 Serbia 27504 T 147 147
111 Serbia 27505 G 147 147
112 Serbia 27506 G 147 147
113 Serbia 27507 A 147 147
114 Serbia 27508 A 147 147
115 Serbia 27509 C T 147 146 Thr39Ile
116 Serbia 27510 A 147 147
117 Serbia 27511 T 147 147
118 Serbia 27512 A 147 147
119 Serbia 27513 C 147 147
120 Serbia 27514 G 147 147
121 Serbia 27515 A 147 147
122 Serbia 27516 G 147 147
123 Serbia 27517 G 147 147
124 Serbia 27518 G 147 147
125 Serbia 27519 C 147 147
126 Serbia 27520 A 147 147
127 Serbia 27521 A 147 147
128 Serbia 27522 T 147 147
129 Serbia 27523 T 147 147
130 Serbia 27524 C 147 147
131 Serbia 27525 A 147 147
132 Serbia 27526 C 147 147
133 Serbia 27527 C 147 147
134 Serbia 27528 A 147 147
135 Serbia 27529 T 147 147
136 Serbia 27530 T 147 147
137 Serbia 27531 T 147 147
138 Serbia 27532 C 147 147
139 Serbia 27533 A 147 147
140 Serbia 27534 T 147 147
141 Serbia 27535 C 147 147
142 Serbia 27536 C 147 147
143 Serbia 27537 T 147 147
144 Serbia 27538 C 147 147
145 Serbia 27539 T 147 147
146 Serbia 27540 A 147 147
147 Serbia 27541 G 147 147
148 Serbia 27542 C 147 147
149 Serbia 27543 T 147 147
150 Serbia 27544 G 147 147
151 Serbia 27545 A 147 147
152 Serbia 27546 T 147 147
153 Serbia 27547 A 147 147
154 Serbia 27548 A 147 147
155 Serbia 27549 C 147 147
156 Serbia 27550 A 147 147
157 Serbia 27551 A 147 147
158 Serbia 27552 A 147 147
159 Serbia 27553 T 147 147
160 Serbia 27554 T 147 147
161 Serbia 27555 T 147 147
162 Serbia 27556 G 147 147
163 Serbia 27557 C 147 147
164 Serbia 27558 A 147 147
165 Serbia 27559 C 147 147
166 Serbia 27560 T 147 147
167 Serbia 27561 G 147 147
168 Serbia 27562 A 147 147
169 Serbia 27563 C 147 147
170 Serbia 27564 T 147 147
171 Serbia 27565 T 147 147
172 Serbia 27566 G 147 147
173 Serbia 27567 C 147 147
174 Serbia 27568 T 147 147
175 Serbia 27569 T 147 147
176 Serbia 27570 T 147 147
177 Serbia 27571 A 147 147
178 Serbia 27572 G 147 147
179 Serbia 27573 C 147 147
180 Serbia 27574 A 147 147
181 Serbia 27575 C 147 147
182 Serbia 27576 T 147 147
183 Serbia 27577 C 147 147
184 Serbia 27578 A 147 147
185 Serbia 27579 A 147 147
186 Serbia 27580 T 147 147
187 Serbia 27581 T 147 147
188 Serbia 27582 T 147 147
189 Serbia 27583 G 147 147
190 Serbia 27584 C 147 147
191 Serbia 27585 T 147 147
192 Serbia 27586 T 147 147
193 Serbia 27587 T 147 147
194 Serbia 27588 T 147 147
195 Serbia 27589 G 147 147
196 Serbia 27590 C 147 147
197 Serbia 27591 T 147 147
198 Serbia 27592 T 147 147
199 Serbia 27593 G 147 147
200 Serbia 27594 T 147 147
201 Serbia 27595 C 147 147
202 Serbia 27596 C 147 147
203 Serbia 27597 T 147 147
204 Serbia 27598 G 147 147
205 Serbia 27599 A 147 147
206 Serbia 27600 C 147 147
207 Serbia 27601 G 147 147
208 Serbia 27602 G 147 147
209 Serbia 27603 C 147 147
210 Serbia 27604 G 147 147
211 Serbia 27605 T 147 147
212 Serbia 27606 A 147 147
213 Serbia 27607 A 147 147
214 Serbia 27608 A 147 147
215 Serbia 27609 A 147 147
216 Serbia 27610 C 147 147
217 Serbia 27611 A 147 147
218 Serbia 27612 C 147 147
219 Serbia 27613 G 147 147
220 Serbia 27614 T 147 147
221 Serbia 27615 C 147 147
222 Serbia 27616 T 147 147
223 Serbia 27617 A 147 147
224 Serbia 27618 T 147 147
225 Serbia 27619 C 147 147
226 Serbia 27620 A 147 147
227 Serbia 27621 G 147 147
228 Serbia 27622 T 147 147
229 Serbia 27623 T 147 147
230 Serbia 27624 A 147 147
231 Serbia 27625 C 147 147
232 Serbia 27626 G T 147 146 Arg78Leu
233 Serbia 27627 T 147 147
234 Serbia 27628 G 147 147
235 Serbia 27629 C 147 147
236 Serbia 27630 C 147 147
237 Serbia 27631 A 147 147
238 Serbia 27632 G 147 147
239 Serbia 27633 A 147 147
240 Serbia 27634 T 147 147
241 Serbia 27635 C 147 147
242 Serbia 27636 A 147 147
243 Serbia 27637 G 147 147
244 Serbia 27638 T 147 147
245 Serbia 27639 T 147 147
246 Serbia 27640 T 147 147
247 Serbia 27641 C 147 147
248 Serbia 27642 A 147 147
249 Serbia 27643 C 147 147
250 Serbia 27644 C 147 147
251 Serbia 27645 T 147 147
252 Serbia 27646 A 147 147
253 Serbia 27647 A 147 147
254 Serbia 27648 A 147 147
255 Serbia 27649 C 147 147
256 Serbia 27650 T 147 147
257 Serbia 27651 G 147 147
258 Serbia 27652 T 147 147
259 Serbia 27653 T 147 147
260 Serbia 27654 C 147 147
261 Serbia 27655 A 147 147
262 Serbia 27656 T 147 147
263 Serbia 27657 C 147 147
264 Serbia 27658 A 147 147
265 Serbia 27659 G 147 147
266 Serbia 27660 A 147 147
267 Serbia 27661 C 147 147
268 Serbia 27662 A 147 147
269 Serbia 27663 A 147 147
270 Serbia 27664 G 147 147
271 Serbia 27665 A 147 147
272 Serbia 27666 G 147 147
273 Serbia 27667 G 147 147
274 Serbia 27668 A 147 147
275 Serbia 27669 A 147 147
276 Serbia 27670 G 147 147
277 Serbia 27671 T 147 147
278 Serbia 27672 T 147 147
279 Serbia 27673 C 147 147
280 Serbia 27674 A 147 147
281 Serbia 27675 A 147 147
282 Serbia 27676 G 147 147
283 Serbia 27677 A 147 147
284 Serbia 27678 A 147 147
285 Serbia 27679 C 147 147
286 Serbia 27680 T 147 147
287 Serbia 27681 T 147 147
288 Serbia 27682 T 147 147
289 Serbia 27683 A 147 147
290 Serbia 27684 C 147 147
291 Serbia 27685 T 147 147
292 Serbia 27686 C 147 147
293 Serbia 27687 T 147 147
294 Serbia 27688 C 147 147
295 Serbia 27689 C 147 147
296 Serbia 27690 A 147 147
297 Serbia 27691 A 147 147
298 Serbia 27692 T 147 147
299 Serbia 27693 T 147 147
300 Serbia 27694 T 147 147
301 Serbia 27695 T 147 147
302 Serbia 27696 T 147 147
303 Serbia 27697 C 147 147
304 Serbia 27698 T 147 147
305 Serbia 27699 T 147 147
306 Serbia 27700 A 147 147
307 Serbia 27701 T 147 147
308 Serbia 27702 T 147 147
309 Serbia 27703 G 147 147
310 Serbia 27704 T 147 147
311 Serbia 27705 T 147 147
312 Serbia 27706 G 147 147
313 Serbia 27707 C 147 147
314 Serbia 27708 G 147 147
315 Serbia 27709 G 147 147
316 Serbia 27710 C 147 147
317 Serbia 27711 A 147 147
318 Serbia 27712 A 147 147
319 Serbia 27713 T 147 147
320 Serbia 27714 A 147 147
321 Serbia 27715 G 147 147
322 Serbia 27716 T 147 147
323 Serbia 27717 G 147 147
324 Serbia 27718 T 147 147
325 Serbia 27719 T 147 147
326 Serbia 27720 T 147 147
327 Serbia 27721 A 147 147
328 Serbia 27722 T 147 147
329 Serbia 27723 A 147 147
330 Serbia 27724 A 147 147
331 Serbia 27725 C 147 147
332 Serbia 27726 A 147 147
333 Serbia 27727 C 147 147
334 Serbia 27728 T 147 147
335 Serbia 27729 T 147 147
336 Serbia 27730 T 147 147
337 Serbia 27731 G 147 147
338 Serbia 27732 C 147 147
339 Serbia 27733 T 147 147
340 Serbia 27734 T 147 147
341 Serbia 27735 C 147 147
342 Serbia 27736 A 147 147
343 Serbia 27737 C 147 147
344 Serbia 27738 A 147 147
345 Serbia 27739 C 147 147
346 Serbia 27740 T 147 147
347 Serbia 27741 C 147 147
348 Serbia 27742 A 147 147
349 Serbia 27743 A 147 147
350 Serbia 27744 A 147 147
351 Serbia 27745 A 147 147
352 Serbia 27746 G 147 147
353 Serbia 27747 A 147 147
354 Serbia 27748 A 147 147
355 Serbia 27749 A 147 147
356 Serbia 27750 G 147 147
357 Serbia 27751 A 147 147
358 Serbia 27752 C 147 147
359 Serbia 27753 A 147 147
360 Serbia 27754 G 147 147
361 Serbia 27755 A 147 147
362 Serbia 27756 A 147 147
363 Serbia 27757 T 147 147
364 Serbia 27758 G 147 147
365 Serbia 27759 A 147 147