National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27       1                              
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                           1          
Q     15                                      
R     15                                      
S     21                   1                  
T     30               1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 27394 A 134 134
1 Senegal 27395 T 134 134
2 Senegal 27396 G 134 134
3 Senegal 27397 A 134 134
4 Senegal 27398 A 134 134
5 Senegal 27399 A 134 134
6 Senegal 27400 A 134 134
7 Senegal 27401 T 134 134
8 Senegal 27402 T 134 134
9 Senegal 27403 A 134 134
10 Senegal 27404 T 134 134
11 Senegal 27405 T 134 134
12 Senegal 27406 C 134 134
13 Senegal 27407 T 134 134
14 Senegal 27408 T 134 134
15 Senegal 27409 T 134 134
16 Senegal 27410 T 134 134
17 Senegal 27411 C 134 134
18 Senegal 27412 T 134 134
19 Senegal 27413 T 134 134
20 Senegal 27414 G 134 134
21 Senegal 27415 G 134 134
22 Senegal 27416 C A 134 133 Ala8Glu
23 Senegal 27417 A 134 134
24 Senegal 27418 C 134 134
25 Senegal 27419 T 134 134
26 Senegal 27420 G 134 134
27 Senegal 27421 A 134 134
28 Senegal 27422 T 134 134
29 Senegal 27423 A 134 134
30 Senegal 27424 A 134 134
31 Senegal 27425 C 134 134
32 Senegal 27426 A 134 134
33 Senegal 27427 C 134 134
34 Senegal 27428 T 134 134
35 Senegal 27429 C 134 134
36 Senegal 27430 G 134 134
37 Senegal 27431 C 134 134
38 Senegal 27432 T 134 134
39 Senegal 27433 A 134 134
40 Senegal 27434 C 134 134
41 Senegal 27435 T 134 134
42 Senegal 27436 T 134 134
43 Senegal 27437 G 134 134
44 Senegal 27438 T 134 134
45 Senegal 27439 G 134 134
46 Senegal 27440 A 134 134
47 Senegal 27441 G 134 134
48 Senegal 27442 C 134 134
49 Senegal 27443 T 134 134
50 Senegal 27444 T 134 134
51 Senegal 27445 T 134 134
52 Senegal 27446 A 134 134
53 Senegal 27447 T 134 134
54 Senegal 27448 C 134 134
55 Senegal 27449 A 134 134
56 Senegal 27450 C 134 134
57 Senegal 27451 T 134 134
58 Senegal 27452 A 134 134
59 Senegal 27453 C 134 134
60 Senegal 27454 C 134 134
61 Senegal 27455 A 134 134
62 Senegal 27456 A 134 134
63 Senegal 27457 G 134 134
64 Senegal 27458 A 134 134
65 Senegal 27459 G 134 134
66 Senegal 27460 T 134 134
67 Senegal 27461 G 134 134
68 Senegal 27462 T 134 134
69 Senegal 27463 G 134 134
70 Senegal 27464 T 134 134
71 Senegal 27465 T 134 134
72 Senegal 27466 A 134 134
73 Senegal 27467 G 134 134
74 Senegal 27468 A 134 134
75 Senegal 27469 G 134 134
76 Senegal 27470 G 134 134
77 Senegal 27471 T 134 134
78 Senegal 27472 A 134 134
79 Senegal 27473 C 134 134
80 Senegal 27474 A 134 134
81 Senegal 27475 A 134 134
82 Senegal 27476 C 134 134
83 Senegal 27477 A 134 134
84 Senegal 27478 G 134 134
85 Senegal 27479 T 134 134
86 Senegal 27480 A 134 134
87 Senegal 27481 C 134 134
88 Senegal 27482 T 134 134
89 Senegal 27483 T 134 134
90 Senegal 27484 T 134 134
91 Senegal 27485 T 134 134
92 Senegal 27486 A 134 134
93 Senegal 27487 A 134 134
94 Senegal 27488 A 134 134
95 Senegal 27489 A 134 134
96 Senegal 27490 G 134 134
97 Senegal 27491 A 134 134
98 Senegal 27492 A 134 134
99 Senegal 27493 C 134 134
100 Senegal 27494 C 134 134
101 Senegal 27495 T 134 134
102 Senegal 27496 T 134 134
103 Senegal 27497 G 134 134
104 Senegal 27498 C 134 134
105 Senegal 27499 T 134 134
106 Senegal 27500 C 134 134
107 Senegal 27501 T 134 134
108 Senegal 27502 T 134 134
109 Senegal 27503 C 134 134
110 Senegal 27504 T 134 134
111 Senegal 27505 G 134 134
112 Senegal 27506 G 134 134
113 Senegal 27507 A 134 134
114 Senegal 27508 A 134 134
115 Senegal 27509 C 134 134
116 Senegal 27510 A 134 134
117 Senegal 27511 T 134 134
118 Senegal 27512 A 134 134
119 Senegal 27513 C 134 134
120 Senegal 27514 G 133 133
121 Senegal 27515 A 132 132
122 Senegal 27516 G 132 132
123 Senegal 27517 G 132 132
124 Senegal 27518 G 132 132
125 Senegal 27519 C 132 132
126 Senegal 27520 A 132 132
127 Senegal 27521 A 132 132
128 Senegal 27522 T 132 132
129 Senegal 27523 T 132 132
130 Senegal 27524 C 132 132
131 Senegal 27525 A 131 131
132 Senegal 27526 C 131 131
133 Senegal 27527 C A 126 125 Pro45Gln
134 Senegal 27528 A 112 107
135 Senegal 27529 T 112 107
136 Senegal 27530 T 110 106
137 Senegal 27531 T 110 103
138 Senegal 27532 C 109 105
139 Senegal 27533 A 109 105
140 Senegal 27534 T 109 105
141 Senegal 27535 C 109 106
142 Senegal 27536 C 108 104
143 Senegal 27537 T 108 104
144 Senegal 27538 C 108 104
145 Senegal 27539 T 108 104
146 Senegal 27540 A 107 101
147 Senegal 27541 G 107 102
148 Senegal 27542 C 106 101
149 Senegal 27543 T 106 102
150 Senegal 27544 G 106 102
151 Senegal 27545 A 106 102
152 Senegal 27546 T 106 101
153 Senegal 27547 A 106 100
154 Senegal 27548 A 106 100
155 Senegal 27549 C 106 101
156 Senegal 27550 A 106 100
157 Senegal 27551 A 106 99
158 Senegal 27552 A 106 101
159 Senegal 27553 T 105 99
160 Senegal 27554 T 103 97
161 Senegal 27555 T 103 95
162 Senegal 27556 G 102 96
163 Senegal 27557 C 102 96
164 Senegal 27558 A 102 96
165 Senegal 27559 C 102 96
166 Senegal 27560 T 102 95
167 Senegal 27561 G 101 94
168 Senegal 27562 A 101 94
169 Senegal 27563 C T 101 93 Thr57Ile
170 Senegal 27564 T 100 93
171 Senegal 27565 T 100 94
172 Senegal 27566 G 100 94
173 Senegal 27567 C 100 95
174 Senegal 27568 T 100 96
175 Senegal 27569 T 100 96
176 Senegal 27570 T 99 95
177 Senegal 27571 A 99 95
178 Senegal 27572 G 99 95
179 Senegal 27573 C 99 95
180 Senegal 27574 A 99 96
181 Senegal 27575 C 99 94
182 Senegal 27576 T 99 94
183 Senegal 27577 C 99 94
184 Senegal 27578 A 99 95
185 Senegal 27579 A 99 94
186 Senegal 27580 T 99 95
187 Senegal 27581 T 99 95
188 Senegal 27582 T 99 95
189 Senegal 27583 G 99 95
190 Senegal 27584 C 98 95
191 Senegal 27585 T 98 95
192 Senegal 27586 T 98 93
193 Senegal 27587 T 98 94
194 Senegal 27588 T 98 96
195 Senegal 27589 G 98 95
196 Senegal 27590 C 98 96
197 Senegal 27591 T 98 95
198 Senegal 27592 T 98 95
199 Senegal 27593 G 98 94
200 Senegal 27594 T 98 96
201 Senegal 27595 C 98 96
202 Senegal 27596 C 97 93
203 Senegal 27597 T 97 96
204 Senegal 27598 G 97 95
205 Senegal 27599 A 97 95
206 Senegal 27600 C 97 94
207 Senegal 27601 G 96 94
208 Senegal 27602 G 96 95
209 Senegal 27603 C 96 93
210 Senegal 27604 G 96 94
211 Senegal 27605 T 96 94
212 Senegal 27606 A 96 94
213 Senegal 27607 A 96 94
214 Senegal 27608 A 96 94
215 Senegal 27609 A 96 94
216 Senegal 27610 C 96 94
217 Senegal 27611 A 96 94
218 Senegal 27612 C 96 95
219 Senegal 27613 G 96 95
220 Senegal 27614 T 96 94
221 Senegal 27615 C 96 95
222 Senegal 27616 T 96 95
223 Senegal 27617 A 96 95
224 Senegal 27618 T 96 95
225 Senegal 27619 C 96 96
226 Senegal 27620 A 96 95
227 Senegal 27621 G 96 95
228 Senegal 27622 T 96 95
229 Senegal 27623 T 96 96
230 Senegal 27624 A 96 96
231 Senegal 27625 C 96 95
232 Senegal 27626 G 96 95
233 Senegal 27627 T 96 95
234 Senegal 27628 G 96 95
235 Senegal 27629 C 96 94
236 Senegal 27630 C 96 95
237 Senegal 27631 A 96 95
238 Senegal 27632 G 96 95
239 Senegal 27633 A 96 95
240 Senegal 27634 T 96 95
241 Senegal 27635 C 96 94
242 Senegal 27636 A 96 93
243 Senegal 27637 G 96 92
244 Senegal 27638 T 96 93
245 Senegal 27639 T 96 93
246 Senegal 27640 T 96 93
247 Senegal 27641 C T 96 92 Ser83Leu
248 Senegal 27642 A 96 92
249 Senegal 27643 C 96 92
250 Senegal 27644 C 95 91
251 Senegal 27645 T 95 92
252 Senegal 27646 A 95 92
253 Senegal 27647 A 95 92
254 Senegal 27648 A 95 91
255 Senegal 27649 C 95 92
256 Senegal 27650 T 95 94
257 Senegal 27651 G 95 94
258 Senegal 27652 T 95 94
259 Senegal 27653 T 95 94
260 Senegal 27654 C 95 94
261 Senegal 27655 A 95 94
262 Senegal 27656 T 95 94
263 Senegal 27657 C 95 95
264 Senegal 27658 A 95 95
265 Senegal 27659 G 95 95
266 Senegal 27660 A 95 95
267 Senegal 27661 C 95 95
268 Senegal 27662 A 95 95
269 Senegal 27663 A 95 95
270 Senegal 27664 G 95 95
271 Senegal 27665 A 95 95
272 Senegal 27666 G 95 95
273 Senegal 27667 G 95 95
274 Senegal 27668 A 95 95
275 Senegal 27669 A 94 94
276 Senegal 27670 G 94 94
277 Senegal 27671 T 94 93
278 Senegal 27672 T 94 93
279 Senegal 27673 C 93 92
280 Senegal 27674 A 93 91
281 Senegal 27675 A 93 92
282 Senegal 27676 G 93 92
283 Senegal 27677 A 93 92
284 Senegal 27678 A 93 92
285 Senegal 27679 C 93 93
286 Senegal 27680 T 93 92
287 Senegal 27681 T 93 92
288 Senegal 27682 T 93 93
289 Senegal 27683 A 93 93
290 Senegal 27684 C 93 92
291 Senegal 27685 T 92 91
292 Senegal 27686 C 92 90
293 Senegal 27687 T 92 89
294 Senegal 27688 C 92 91
295 Senegal 27689 C 92 90
296 Senegal 27690 A 92 91
297 Senegal 27691 A 92 91
298 Senegal 27692 T 92 91
299 Senegal 27693 T 92 91
300 Senegal 27694 T 92 90
301 Senegal 27695 T 92 91
302 Senegal 27696 T 92 91
303 Senegal 27697 C 92 91
304 Senegal 27698 T 92 91
305 Senegal 27699 T 92 90
306 Senegal 27700 A 92 91
307 Senegal 27701 T 92 91
308 Senegal 27702 T 92 91
309 Senegal 27703 G 92 91
310 Senegal 27704 T 92 91
311 Senegal 27705 T 92 91
312 Senegal 27706 G 92 91
313 Senegal 27707 C 92 91
314 Senegal 27708 G 92 91
315 Senegal 27709 G 92 91
316 Senegal 27710 C 92 91
317 Senegal 27711 A 92 91
318 Senegal 27712 A 92 91
319 Senegal 27713 T 92 91
320 Senegal 27714 A 92 92
321 Senegal 27715 G 92 92
322 Senegal 27716 T 92 90
323 Senegal 27717 G 92 91
324 Senegal 27718 T 92 92
325 Senegal 27719 T 92 90
326 Senegal 27720 T 92 91
327 Senegal 27721 A 92 91
328 Senegal 27722 T 92 90
329 Senegal 27723 A 92 91
330 Senegal 27724 A 92 91
331 Senegal 27725 C 92 91
332 Senegal 27726 A 92 90
333 Senegal 27727 C 92 90
334 Senegal 27728 T 92 90
335 Senegal 27729 T 92 90
336 Senegal 27730 T 92 90
337 Senegal 27731 G 92 89
338 Senegal 27732 C 92 92
339 Senegal 27733 T 92 92
340 Senegal 27734 T 92 90
341 Senegal 27735 C 92 91
342 Senegal 27736 A 92 91
343 Senegal 27737 C 92 91
344 Senegal 27738 A 92 91
345 Senegal 27739 C 92 92
346 Senegal 27740 T 91 90
347 Senegal 27741 C 91 91
348 Senegal 27742 A 91 90
349 Senegal 27743 A 91 90
350 Senegal 27744 A 91 91
351 Senegal 27745 A 91 91
352 Senegal 27746 G 91 91
353 Senegal 27747 A 91 91
354 Senegal 27748 A 90 90
355 Senegal 27749 A 89 89
356 Senegal 27750 G 89 88
357 Senegal 27751 A 89 89
358 Senegal 27752 C 89 89
359 Senegal 27753 A 89 89
360 Senegal 27754 G 89 88
361 Senegal 27755 A 89 89
362 Senegal 27756 A 89 89
363 Senegal 27757 T 89 89
364 Senegal 27758 G 89 89
365 Senegal 27759 A 89 89