National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 4         1                   3      
C     18                               1      
D     6                                      
E     24     2 1                              
F     30         1                     1      
G     12           2                       1  
H     9             1             1 2       1
I     25                     1           2    
K     21                       1              
L     45         4         5     1         1  
M     6                                      
N     6                                      
P     18                   3         1 2      
Q 1   15                                      
R     15               3   1             1    
S     21         1               1     1     1
T     30 2             6                 2    
V     24         1     1                      
Y     15   1         1                       3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 27394 A 1799 1799
1 Russia 27395 T 1802 1802
2 Russia 27396 G 1803 1803
3 Russia 27397 A 1803 1803
4 Russia 27398 A 1803 1803
5 Russia 27399 A 1803 1803
6 Russia 27400 A 1803 1803
7 Russia 27401 T 1803 1803
8 Russia 27402 T 1803 1803
9 Russia 27403 A 1803 1803
10 Russia 27404 T 1803 1803
11 Russia 27405 T 1803 1803
12 Russia 27406 C T 1803 1801 Leu5Phe
13 Russia 27407 T 1803 1803
14 Russia 27408 T 1803 1803
15 Russia 27409 T 1803 1803
16 Russia 27410 T 1803 1803
17 Russia 27411 C 1803 1803
18 Russia 27412 T 1803 1803
19 Russia 27413 T 1803 1803
20 Russia 27414 G 1803 1803
21 Russia 27415 G T 1803 1763 Ala8Ser
22 Russia 27416 C 1803 1803
23 Russia 27417 A 1803 1803
24 Russia 27418 C 1803 1803
25 Russia 27419 T 1803 1802
26 Russia 27420 G 1803 1802
27 Russia 27421 A 1803 1802
28 Russia 27422 T C 1803 1800 Ile10Thr
29 Russia 27423 A 1803 1802
30 Russia 27424 A 1803 1802
31 Russia 27425 C T 1803 1801 Thr11Ile
32 Russia 27426 A G 1803 1800 Thr11Thr
33 Russia 27427 C G 1803 1801 Leu12Val
34 Russia 27428 T C 1803 1802 Leu12Pro
35 Russia 27429 C 1803 1803
36 Russia 27430 G 1804 1804
37 Russia 27431 C 1804 1804
38 Russia 27432 T C 1804 1803 Ala13Ala
39 Russia 27433 A 1804 1804
40 Russia 27434 C T 1804 1790 Thr14Ile
41 Russia 27435 T 1804 1804
42 Russia 27436 T A 1804 1803 Cys15Ser
43 Russia 27437 G 1804 1804
44 Russia 27438 T 1804 1804
45 Russia 27439 G 1804 1804
46 Russia 27440 A 1804 1804
47 Russia 27441 G T 1804 1803 Glu16Asp
48 Russia 27442 C T 1804 1801 Leu17Phe
49 Russia 27443 T 1804 1803
50 Russia 27444 T 1804 1804
51 Russia 27445 T 1804 1803
52 Russia 27446 A G 1804 1802 Tyr18Cys
53 Russia 27447 T C 1804 1801 Tyr18Tyr
54 Russia 27448 C 1804 1803
55 Russia 27449 A 1804 1803
56 Russia 27450 C 1804 1800
57 Russia 27451 T 1804 1799
58 Russia 27452 A 1804 1799
59 Russia 27453 C 1804 1799
60 Russia 27454 C 1804 1799
61 Russia 27455 A 1804 1799
62 Russia 27456 A 1804 1799
63 Russia 27457 G 1804 1799
64 Russia 27458 A 1804 1799
65 Russia 27459 G 1804 1799
66 Russia 27460 T 1804 1798
67 Russia 27461 G 1804 1798
68 Russia 27462 T 1804 1798
69 Russia 27463 G T 1804 1796 Val24Phe
70 Russia 27464 T 1804 1798
71 Russia 27465 T 1804 1798
72 Russia 27466 A 1804 1797
73 Russia 27467 G C 1804 1792 Arg25Thr
74 Russia 27468 A 1804 1793
75 Russia 27469 G 1804 1790
76 Russia 27470 G 1804 1790
77 Russia 27471 T 1804 1790
78 Russia 27472 A 1803 1800
79 Russia 27473 C 1803 1800
80 Russia 27474 A 1803 1800
81 Russia 27475 A G 1803 1799 Thr28Ala
82 Russia 27476 C T 1803 1799 Thr28Ile
83 Russia 27477 A G 1803 1797 Thr28Thr
84 Russia 27478 G 1803 1801
85 Russia 27479 T 1804 1802
86 Russia 27480 A 1804 1803
87 Russia 27481 C 1804 1802
88 Russia 27482 T 1804 1802
89 Russia 27483 T 1804 1803
90 Russia 27484 T C 1804 1798 Leu31Leu
91 Russia 27485 T 1804 1803
92 Russia 27486 A 1804 1803
93 Russia 27487 A 1804 1803
94 Russia 27488 A 1804 1803
95 Russia 27489 A 1804 1803
96 Russia 27490 G 1804 1803
97 Russia 27491 A 1804 1803
98 Russia 27492 A 1804 1803
99 Russia 27493 C T 1804 1802 Pro34Ser
100 Russia 27494 C T 1804 1802 Pro34Leu
101 Russia 27495 T 1804 1803
102 Russia 27496 T 1804 1803
103 Russia 27497 G 1804 1803
104 Russia 27498 C 1804 1803
105 Russia 27499 T 1804 1803
106 Russia 27500 C 1804 1804
107 Russia 27501 T 1804 1804
108 Russia 27502 T 1804 1804
109 Russia 27503 C T,A 1804 1800 Ser37Phe-p.Ser37Tyr
110 Russia 27504 T C 1804 1803 Ser37Ser
111 Russia 27505 G 1803 1803
112 Russia 27506 G T 1803 1802 Gly38Val
113 Russia 27507 A G 1803 1802 Gly38Gly
114 Russia 27508 A 1803 1803
115 Russia 27509 C T 1803 1799 Thr39Ile
116 Russia 27510 A 1803 1803
117 Russia 27511 T 1803 1803
118 Russia 27512 A 1802 1801
119 Russia 27513 C 1802 1801
120 Russia 27514 G 1802 1801
121 Russia 27515 A 1802 1801
122 Russia 27516 G A 1802 1800 Glu41Glu
123 Russia 27517 G 1802 1801
124 Russia 27518 G 1802 1801
125 Russia 27519 C 1802 1802
126 Russia 27520 A 1802 1802
127 Russia 27521 A 1802 1802
128 Russia 27522 T 1802 1802
129 Russia 27523 T 1802 1802
130 Russia 27524 C 1802 1802
131 Russia 27525 A 1802 1802
132 Russia 27526 C 1802 1802
133 Russia 27527 C T 1802 1800 Pro45Leu
134 Russia 27528 A 1802 1802
135 Russia 27529 T 1802 1802
136 Russia 27530 T C 1802 1801 Phe46Ser
137 Russia 27531 T 1802 1802
138 Russia 27532 C T 1802 1798 His47Tyr
139 Russia 27533 A G 1802 1801 His47Arg
140 Russia 27534 T G,C 1802 1800 His47Gln-p.His47His
141 Russia 27535 C 1802 1802
142 Russia 27536 C 1802 1802
143 Russia 27537 T 1802 1802
144 Russia 27538 C 1802 1802
145 Russia 27539 T 1802 1802
146 Russia 27540 A G 1802 1801 Leu49Leu
147 Russia 27541 G T 1802 1799 Ala50Ser
148 Russia 27542 C 1802 1802
149 Russia 27543 T 1802 1802
150 Russia 27544 G 1802 1802
151 Russia 27545 A 1802 1802
152 Russia 27546 T 1802 1802
153 Russia 27547 A 1802 1802
154 Russia 27548 A 1802 1801
155 Russia 27549 C 1802 1802
156 Russia 27550 A 1802 1802
157 Russia 27551 A 1802 1802
158 Russia 27552 A 1802 1802
159 Russia 27553 T 1802 1802
160 Russia 27554 T 1802 1802
161 Russia 27555 T 1802 1802
162 Russia 27556 G T 1802 1801 Ala55Ser
163 Russia 27557 C 1802 1802
164 Russia 27558 A 1802 1802
165 Russia 27559 C T 1802 1800 Leu56Leu
166 Russia 27560 T 1802 1802
167 Russia 27561 G T 1802 1798 Leu56Leu
168 Russia 27562 A 1802 1802
169 Russia 27563 C 1802 1802
170 Russia 27564 T 1802 1802
171 Russia 27565 T 1802 1802
172 Russia 27566 G 1802 1802
173 Russia 27567 C 1802 1802
174 Russia 27568 T 1802 1802
175 Russia 27569 T 1802 1802
176 Russia 27570 T 1802 1802
177 Russia 27571 A 1802 1802
178 Russia 27572 G 1802 1802
179 Russia 27573 C 1802 1802
180 Russia 27574 A 1801 1801
181 Russia 27575 C 1801 1801
182 Russia 27576 T 1800 1800
183 Russia 27577 C T 1800 1799 Gln62*
184 Russia 27578 A 1800 1800
185 Russia 27579 A 1800 1800
186 Russia 27580 T 1800 1799
187 Russia 27581 T 1800 1800
188 Russia 27582 T 1800 1800
189 Russia 27583 G 1800 1800
190 Russia 27584 C G 1801 1800 Ala64Gly
191 Russia 27585 T 1801 1801
192 Russia 27586 T 1801 1801
193 Russia 27587 T 1802 1802
194 Russia 27588 T 1802 1802
195 Russia 27589 G 1802 1802
196 Russia 27590 C 1802 1802
197 Russia 27591 T C 1802 1801 Ala66Ala
198 Russia 27592 T 1802 1802
199 Russia 27593 G 1802 1802
200 Russia 27594 T 1802 1802
201 Russia 27595 C 1802 1802
202 Russia 27596 C 1802 1802
203 Russia 27597 T 1802 1802
204 Russia 27598 G 1802 1802
205 Russia 27599 A 1802 1802
206 Russia 27600 C 1802 1802
207 Russia 27601 G 1802 1802
208 Russia 27602 G 1802 1802
209 Russia 27603 C T 1802 1799 Gly70Gly
210 Russia 27604 G 1802 1802
211 Russia 27605 T 1802 1802
212 Russia 27606 A 1802 1802
213 Russia 27607 A 1802 1802
214 Russia 27608 A 1802 1802
215 Russia 27609 A 1802 1802
216 Russia 27610 C 1802 1802
217 Russia 27611 A G 1802 1801 His73Arg
218 Russia 27612 C 1803 1803
219 Russia 27613 G A 1803 1801 Val74Ile
220 Russia 27614 T 1803 1803
221 Russia 27615 C 1803 1803
222 Russia 27616 T 1803 1803
223 Russia 27617 A 1803 1803
224 Russia 27618 T C 1803 1784 Tyr75Tyr
225 Russia 27619 C 1803 1803
226 Russia 27620 A 1802 1802
227 Russia 27621 G 1801 1801
228 Russia 27622 T 1801 1801
229 Russia 27623 T 1801 1801
230 Russia 27624 A 1801 1801
231 Russia 27625 C 1801 1801
232 Russia 27626 G T 1801 1800 Arg78Leu
233 Russia 27627 T 1801 1801
234 Russia 27628 G 1801 1801
235 Russia 27629 C 1801 1801
236 Russia 27630 C T 1801 1797 Ala79Ala
237 Russia 27631 A 1801 1801
238 Russia 27632 G T 1801 1798 Arg80Ile
239 Russia 27633 A 1801 1801
240 Russia 27634 T 1802 1802
241 Russia 27635 C 1802 1802
242 Russia 27636 A 1802 1801
243 Russia 27637 G 1802 1801
244 Russia 27638 T 1802 1801
245 Russia 27639 T 1802 1801
246 Russia 27640 T 1801 1799
247 Russia 27641 C 1801 1799
248 Russia 27642 A 1801 1799
249 Russia 27643 C T 1801 1798 Pro84Ser
250 Russia 27644 C G 1801 1797 Pro84Arg
251 Russia 27645 T 1801 1799
252 Russia 27646 A 1801 1799
253 Russia 27647 A 1801 1798
254 Russia 27648 A 1801 1798
255 Russia 27649 C 1801 1798
256 Russia 27650 T 1801 1797
257 Russia 27651 G 1801 1798
258 Russia 27652 T 1801 1799
259 Russia 27653 T 1801 1799
260 Russia 27654 C T 1801 1796 Phe87Phe
261 Russia 27655 A 1801 1799
262 Russia 27656 T C 1801 1792 Ile88Thr
263 Russia 27657 C 1801 1799
264 Russia 27658 A 1801 1799
265 Russia 27659 G T 1801 1798 Arg89Ile
266 Russia 27660 A 1801 1799
267 Russia 27661 C 1801 1800
268 Russia 27662 A 1801 1800
269 Russia 27663 A 1801 1800
270 Russia 27664 G 1801 1801
271 Russia 27665 A 1801 1801
272 Russia 27666 G T 1801 1800 Glu91Asp
273 Russia 27667 G 1801 1801
274 Russia 27668 A 1801 1801
275 Russia 27669 A 1801 1801
276 Russia 27670 G 1801 1801
277 Russia 27671 T 1801 1801
278 Russia 27672 T 1801 1801
279 Russia 27673 C 1801 1801
280 Russia 27674 A 1801 1801
281 Russia 27675 A 1801 1801
282 Russia 27676 G 1801 1801
283 Russia 27677 A 1801 1801
284 Russia 27678 A 1801 1801
285 Russia 27679 C T 1801 1794 Leu96Phe
286 Russia 27680 T 1801 1801
287 Russia 27681 T 1801 1801
288 Russia 27682 T C 1801 1798 Tyr97His
289 Russia 27683 A 1801 1801
290 Russia 27684 C T 1801 1798 Tyr97Tyr
291 Russia 27685 T C 1801 1800 Ser98Pro
292 Russia 27686 C 1801 1801
293 Russia 27687 T 1801 1801
294 Russia 27688 C 1801 1801
295 Russia 27689 C T 1801 1799 Pro99Leu
296 Russia 27690 A 1801 1801
297 Russia 27691 A 1801 1801
298 Russia 27692 T 1801 1801
299 Russia 27693 T 1801 1801
300 Russia 27694 T 1800 1800
301 Russia 27695 T 1800 1800
302 Russia 27696 T 1800 1800
303 Russia 27697 C 1800 1800
304 Russia 27698 T 1800 1800
305 Russia 27699 T 1800 1800
306 Russia 27700 A 1799 1799
307 Russia 27701 T 1799 1799
308 Russia 27702 T G 1799 1798 Ile103Met
309 Russia 27703 G 1799 1799
310 Russia 27704 T 1799 1799
311 Russia 27705 T 1799 1799
312 Russia 27706 G 1799 1799
313 Russia 27707 C 1799 1799
314 Russia 27708 G A 1799 1796 Ala105Ala
315 Russia 27709 G 1799 1799
316 Russia 27710 C 1799 1799
317 Russia 27711 A 1799 1799
318 Russia 27712 A 1799 1799
319 Russia 27713 T 1799 1799
320 Russia 27714 A 1799 1799
321 Russia 27715 G 1799 1799
322 Russia 27716 T 1798 1798
323 Russia 27717 G 1798 1798
324 Russia 27718 T 1798 1798
325 Russia 27719 T 1798 1798
326 Russia 27720 T 1798 1798
327 Russia 27721 A 1798 1798
328 Russia 27722 T 1798 1798
329 Russia 27723 A 1798 1798
330 Russia 27724 A 1798 1798
331 Russia 27725 C 1798 1798
332 Russia 27726 A 1798 1798
333 Russia 27727 C 1798 1798
334 Russia 27728 T 1798 1798
335 Russia 27729 T 1798 1798
336 Russia 27730 T 1798 1798
337 Russia 27731 G 1798 1798
338 Russia 27732 C 1798 1798
339 Russia 27733 T 1798 1798
340 Russia 27734 T 1798 1798
341 Russia 27735 C 1798 1798
342 Russia 27736 A G 1798 1797 Thr115Ala
343 Russia 27737 C T 1798 1797 Thr115Ile
344 Russia 27738 A 1798 1798
345 Russia 27739 C T 1798 1797 Leu116Phe
346 Russia 27740 T 1798 1798
347 Russia 27741 C T 1798 1783 Leu116Leu
348 Russia 27742 A 1798 1798
349 Russia 27743 A 1798 1798
350 Russia 27744 A 1798 1798
351 Russia 27745 A 1798 1798
352 Russia 27746 G T 1798 1797 Arg118Ile
353 Russia 27747 A 1798 1798
354 Russia 27748 A 1798 1798
355 Russia 27749 A 1797 1797
356 Russia 27750 G T 1797 1796 Lys119Asn
357 Russia 27751 A 1797 1797
358 Russia 27752 C T 1797 1794 Thr120Ile
359 Russia 27753 A 1797 1797
360 Russia 27754 G 1797 1797
361 Russia 27755 A 1797 1797
362 Russia 27756 A 1797 1797
363 Russia 27757 T 1797 1797
364 Russia 27758 G 1796 1796
365 Russia 27759 A 1795 1795