National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 27394 A 16 16
1 Qatar 27395 T 16 16
2 Qatar 27396 G 16 16
3 Qatar 27397 A 16 16
4 Qatar 27398 A 16 16
5 Qatar 27399 A 16 16
6 Qatar 27400 A 16 16
7 Qatar 27401 T 16 16
8 Qatar 27402 T 16 16
9 Qatar 27403 A 16 16
10 Qatar 27404 T 16 16
11 Qatar 27405 T 16 16
12 Qatar 27406 C 16 16
13 Qatar 27407 T 16 16
14 Qatar 27408 T 16 16
15 Qatar 27409 T 16 16
16 Qatar 27410 T 16 16
17 Qatar 27411 C 16 16
18 Qatar 27412 T 16 16
19 Qatar 27413 T 16 16
20 Qatar 27414 G 16 16
21 Qatar 27415 G 16 16
22 Qatar 27416 C 16 16
23 Qatar 27417 A 16 16
24 Qatar 27418 C 16 16
25 Qatar 27419 T 16 16
26 Qatar 27420 G 16 16
27 Qatar 27421 A 16 16
28 Qatar 27422 T 16 16
29 Qatar 27423 A 16 16
30 Qatar 27424 A 16 16
31 Qatar 27425 C 16 16
32 Qatar 27426 A 16 16
33 Qatar 27427 C 16 16
34 Qatar 27428 T 16 16
35 Qatar 27429 C 16 16
36 Qatar 27430 G 16 16
37 Qatar 27431 C 16 16
38 Qatar 27432 T 16 16
39 Qatar 27433 A 16 16
40 Qatar 27434 C 16 16
41 Qatar 27435 T 16 16
42 Qatar 27436 T 16 16
43 Qatar 27437 G 16 16
44 Qatar 27438 T 16 16
45 Qatar 27439 G 16 16
46 Qatar 27440 A 16 16
47 Qatar 27441 G 16 16
48 Qatar 27442 C 16 16
49 Qatar 27443 T 16 16
50 Qatar 27444 T 16 16
51 Qatar 27445 T 16 16
52 Qatar 27446 A 16 16
53 Qatar 27447 T 16 16
54 Qatar 27448 C 16 16
55 Qatar 27449 A 16 16
56 Qatar 27450 C 16 16
57 Qatar 27451 T 16 16
58 Qatar 27452 A 16 16
59 Qatar 27453 C 16 16
60 Qatar 27454 C 16 16
61 Qatar 27455 A 16 16
62 Qatar 27456 A 16 16
63 Qatar 27457 G 16 16
64 Qatar 27458 A 16 16
65 Qatar 27459 G 16 16
66 Qatar 27460 T 16 16
67 Qatar 27461 G 16 16
68 Qatar 27462 T 16 16
69 Qatar 27463 G 16 16
70 Qatar 27464 T 16 16
71 Qatar 27465 T 16 16
72 Qatar 27466 A 16 16
73 Qatar 27467 G 16 16
74 Qatar 27468 A 16 16
75 Qatar 27469 G 16 16
76 Qatar 27470 G 16 16
77 Qatar 27471 T 16 16
78 Qatar 27472 A 16 16
79 Qatar 27473 C 16 16
80 Qatar 27474 A 16 16
81 Qatar 27475 A 16 16
82 Qatar 27476 C 16 16
83 Qatar 27477 A 16 16
84 Qatar 27478 G 16 16
85 Qatar 27479 T 16 16
86 Qatar 27480 A 16 16
87 Qatar 27481 C 16 16
88 Qatar 27482 T 16 16
89 Qatar 27483 T 16 16
90 Qatar 27484 T 16 16
91 Qatar 27485 T 16 16
92 Qatar 27486 A 16 16
93 Qatar 27487 A 16 16
94 Qatar 27488 A 16 16
95 Qatar 27489 A 16 16
96 Qatar 27490 G 16 16
97 Qatar 27491 A 16 16
98 Qatar 27492 A 16 16
99 Qatar 27493 C 16 16
100 Qatar 27494 C 16 16
101 Qatar 27495 T 16 16
102 Qatar 27496 T 16 16
103 Qatar 27497 G 16 16
104 Qatar 27498 C 16 16
105 Qatar 27499 T 16 16
106 Qatar 27500 C 16 16
107 Qatar 27501 T 16 16
108 Qatar 27502 T 16 16
109 Qatar 27503 C 16 16
110 Qatar 27504 T 16 16
111 Qatar 27505 G 16 16
112 Qatar 27506 G 16 16
113 Qatar 27507 A 16 16
114 Qatar 27508 A 16 16
115 Qatar 27509 C 16 16
116 Qatar 27510 A 16 16
117 Qatar 27511 T 16 16
118 Qatar 27512 A 16 16
119 Qatar 27513 C 16 16
120 Qatar 27514 G 16 16
121 Qatar 27515 A 16 16
122 Qatar 27516 G 16 16
123 Qatar 27517 G 16 16
124 Qatar 27518 G 16 16
125 Qatar 27519 C 16 16
126 Qatar 27520 A 16 16
127 Qatar 27521 A 16 16
128 Qatar 27522 T 16 16
129 Qatar 27523 T 16 16
130 Qatar 27524 C 16 16
131 Qatar 27525 A 16 16
132 Qatar 27526 C 16 16
133 Qatar 27527 C 16 16
134 Qatar 27528 A 16 16
135 Qatar 27529 T 15 15
136 Qatar 27530 T 15 15
137 Qatar 27531 T 15 15
138 Qatar 27532 C 15 15
139 Qatar 27533 A 15 15
140 Qatar 27534 T 15 15
141 Qatar 27535 C 15 15
142 Qatar 27536 C 15 15
143 Qatar 27537 T 15 15
144 Qatar 27538 C 15 15
145 Qatar 27539 T 15 15
146 Qatar 27540 A 15 15
147 Qatar 27541 G 15 15
148 Qatar 27542 C 15 15
149 Qatar 27543 T 15 15
150 Qatar 27544 G 15 15
151 Qatar 27545 A 15 15
152 Qatar 27546 T 15 15
153 Qatar 27547 A 15 15
154 Qatar 27548 A 15 15
155 Qatar 27549 C 15 15
156 Qatar 27550 A 15 15
157 Qatar 27551 A 15 15
158 Qatar 27552 A 15 15
159 Qatar 27553 T 15 15
160 Qatar 27554 T 15 15
161 Qatar 27555 T 15 15
162 Qatar 27556 G 15 15
163 Qatar 27557 C 15 15
164 Qatar 27558 A 15 15
165 Qatar 27559 C 15 15
166 Qatar 27560 T 15 15
167 Qatar 27561 G 15 15
168 Qatar 27562 A 15 15
169 Qatar 27563 C 15 15
170 Qatar 27564 T 15 15
171 Qatar 27565 T 15 15
172 Qatar 27566 G 15 15
173 Qatar 27567 C 15 15
174 Qatar 27568 T 15 15
175 Qatar 27569 T 15 15
176 Qatar 27570 T 15 15
177 Qatar 27571 A 15 15
178 Qatar 27572 G 15 15
179 Qatar 27573 C 15 15
180 Qatar 27574 A 15 15
181 Qatar 27575 C 15 15
182 Qatar 27576 T 15 15
183 Qatar 27577 C 15 15
184 Qatar 27578 A 15 15
185 Qatar 27579 A 15 15
186 Qatar 27580 T 15 15
187 Qatar 27581 T 15 15
188 Qatar 27582 T 15 15
189 Qatar 27583 G 15 15
190 Qatar 27584 C 15 15
191 Qatar 27585 T 15 15
192 Qatar 27586 T 15 15
193 Qatar 27587 T 15 15
194 Qatar 27588 T 15 15
195 Qatar 27589 G 15 15
196 Qatar 27590 C 15 15
197 Qatar 27591 T 15 15
198 Qatar 27592 T 15 15
199 Qatar 27593 G 15 15
200 Qatar 27594 T 15 15
201 Qatar 27595 C 15 15
202 Qatar 27596 C 15 15
203 Qatar 27597 T 15 15
204 Qatar 27598 G 15 15
205 Qatar 27599 A 15 15
206 Qatar 27600 C 15 15
207 Qatar 27601 G 15 15
208 Qatar 27602 G 15 15
209 Qatar 27603 C 15 15
210 Qatar 27604 G 15 15
211 Qatar 27605 T 15 15
212 Qatar 27606 A 15 15
213 Qatar 27607 A 15 15
214 Qatar 27608 A 15 15
215 Qatar 27609 A 15 15
216 Qatar 27610 C 15 15
217 Qatar 27611 A 15 15
218 Qatar 27612 C 15 15
219 Qatar 27613 G 15 15
220 Qatar 27614 T 15 15
221 Qatar 27615 C 15 15
222 Qatar 27616 T 15 15
223 Qatar 27617 A 15 15
224 Qatar 27618 T 15 15
225 Qatar 27619 C 15 15
226 Qatar 27620 A 15 15
227 Qatar 27621 G 15 15
228 Qatar 27622 T 15 15
229 Qatar 27623 T 15 15
230 Qatar 27624 A 15 15
231 Qatar 27625 C 15 15
232 Qatar 27626 G 15 15
233 Qatar 27627 T 15 15
234 Qatar 27628 G 15 15
235 Qatar 27629 C 15 15
236 Qatar 27630 C 15 15
237 Qatar 27631 A 15 15
238 Qatar 27632 G 15 15
239 Qatar 27633 A 15 15
240 Qatar 27634 T 15 15
241 Qatar 27635 C 15 15
242 Qatar 27636 A 15 15
243 Qatar 27637 G 15 15
244 Qatar 27638 T 15 15
245 Qatar 27639 T 15 15
246 Qatar 27640 T 15 15
247 Qatar 27641 C 15 15
248 Qatar 27642 A 15 15
249 Qatar 27643 C 15 15
250 Qatar 27644 C 15 15
251 Qatar 27645 T 15 15
252 Qatar 27646 A 15 15
253 Qatar 27647 A 15 15
254 Qatar 27648 A 15 15
255 Qatar 27649 C 15 15
256 Qatar 27650 T 15 15
257 Qatar 27651 G 15 15
258 Qatar 27652 T 15 15
259 Qatar 27653 T 15 15
260 Qatar 27654 C 15 15
261 Qatar 27655 A 15 15
262 Qatar 27656 T 15 15
263 Qatar 27657 C 15 15
264 Qatar 27658 A 15 15
265 Qatar 27659 G 15 15
266 Qatar 27660 A 15 15
267 Qatar 27661 C 15 15
268 Qatar 27662 A 15 15
269 Qatar 27663 A 15 15
270 Qatar 27664 G 15 15
271 Qatar 27665 A 15 15
272 Qatar 27666 G 15 15
273 Qatar 27667 G 15 15
274 Qatar 27668 A 15 15
275 Qatar 27669 A 15 15
276 Qatar 27670 G 15 15
277 Qatar 27671 T 15 15
278 Qatar 27672 T 15 15
279 Qatar 27673 C 15 15
280 Qatar 27674 A 15 15
281 Qatar 27675 A 15 15
282 Qatar 27676 G 15 15
283 Qatar 27677 A 15 15
284 Qatar 27678 A 15 15
285 Qatar 27679 C 15 15
286 Qatar 27680 T 15 15
287 Qatar 27681 T 15 15
288 Qatar 27682 T 15 15
289 Qatar 27683 A 15 15
290 Qatar 27684 C 15 15
291 Qatar 27685 T 15 15
292 Qatar 27686 C 15 15
293 Qatar 27687 T 15 15
294 Qatar 27688 C 15 15
295 Qatar 27689 C 15 15
296 Qatar 27690 A 15 15
297 Qatar 27691 A 15 15
298 Qatar 27692 T 15 15
299 Qatar 27693 T 15 15
300 Qatar 27694 T 15 15
301 Qatar 27695 T 15 15
302 Qatar 27696 T 15 15
303 Qatar 27697 C 15 15
304 Qatar 27698 T 15 15
305 Qatar 27699 T 15 15
306 Qatar 27700 A 15 15
307 Qatar 27701 T 15 15
308 Qatar 27702 T 15 15
309 Qatar 27703 G 15 15
310 Qatar 27704 T 15 15
311 Qatar 27705 T 15 15
312 Qatar 27706 G 15 15
313 Qatar 27707 C 15 15
314 Qatar 27708 G 15 15
315 Qatar 27709 G 15 15
316 Qatar 27710 C 15 15
317 Qatar 27711 A 15 15
318 Qatar 27712 A 15 15
319 Qatar 27713 T 15 15
320 Qatar 27714 A 15 15
321 Qatar 27715 G 15 15
322 Qatar 27716 T 15 15
323 Qatar 27717 G 15 15
324 Qatar 27718 T 15 15
325 Qatar 27719 T 15 15
326 Qatar 27720 T 15 15
327 Qatar 27721 A 15 15
328 Qatar 27722 T 15 15
329 Qatar 27723 A 15 15
330 Qatar 27724 A 15 15
331 Qatar 27725 C 15 15
332 Qatar 27726 A 15 15
333 Qatar 27727 C 15 15
334 Qatar 27728 T 15 15
335 Qatar 27729 T 15 15
336 Qatar 27730 T 15 15
337 Qatar 27731 G 15 15
338 Qatar 27732 C 15 15
339 Qatar 27733 T 15 15
340 Qatar 27734 T 15 15
341 Qatar 27735 C 15 15
342 Qatar 27736 A 15 15
343 Qatar 27737 C 15 15
344 Qatar 27738 A 15 15
345 Qatar 27739 C 15 15
346 Qatar 27740 T 15 15
347 Qatar 27741 C 15 15
348 Qatar 27742 A 15 15
349 Qatar 27743 A 15 15
350 Qatar 27744 A 15 15
351 Qatar 27745 A 15 15
352 Qatar 27746 G 15 15
353 Qatar 27747 A 15 15
354 Qatar 27748 A 15 15
355 Qatar 27749 A 15 15
356 Qatar 27750 G 15 15
357 Qatar 27751 A 15 15
358 Qatar 27752 C 15 15
359 Qatar 27753 A 15 15
360 Qatar 27754 G 15 15
361 Qatar 27755 A 15 15
362 Qatar 27756 A 15 15
363 Qatar 27757 T 15 15
364 Qatar 27758 G 15 15
365 Qatar 27759 A 15 15