National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 2                                 1  
C     18   1                                  
D     6     1                 1              
E     24     1 2                   1          
F     30                   2                  
G     12           1                       1  
H     9                                     2
I     25               1                      
K     21       1       1             1        
L     45                   3                  
M     6                                      
N     6                       1              
P     18                   3     1     1      
Q 2   15             1                        
R     15               2                      
S     21         1         1     1     1      
T     30               4               1      
V     24         2     1   2               1  
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Portugal 27394 A 2421 2421
1 Portugal 27395 T 2421 2421
2 Portugal 27396 G 2421 2421
3 Portugal 27397 A G 2421 2420 Lys2Glu
4 Portugal 27398 A 2421 2421
5 Portugal 27399 A 2421 2421
6 Portugal 27400 A 2421 2421
7 Portugal 27401 T 2421 2421
8 Portugal 27402 T 2421 2421
9 Portugal 27403 A 2421 2421
10 Portugal 27404 T 2421 2421
11 Portugal 27405 T 2421 2421
12 Portugal 27406 C 2421 2421
13 Portugal 27407 T 2421 2421
14 Portugal 27408 T 2421 2421
15 Portugal 27409 T 2421 2421
16 Portugal 27410 T 2421 2421
17 Portugal 27411 C 2421 2421
18 Portugal 27412 T 2421 2421
19 Portugal 27413 T 2421 2421
20 Portugal 27414 G 2421 2421
21 Portugal 27415 G 2421 2421
22 Portugal 27416 C 2421 2421
23 Portugal 27417 A 2421 2421
24 Portugal 27418 C 2421 2421
25 Portugal 27419 T 2421 2421
26 Portugal 27420 G 2421 2421
27 Portugal 27421 A 2421 2421
28 Portugal 27422 T 2421 2421
29 Portugal 27423 A 2421 2421
30 Portugal 27424 A 2421 2421
31 Portugal 27425 C 2421 2421
32 Portugal 27426 A 2421 2421
33 Portugal 27427 C 2421 2421
34 Portugal 27428 T 2421 2421
35 Portugal 27429 C 2421 2421
36 Portugal 27430 G 2421 2421
37 Portugal 27431 C T 2421 2420 Ala13Val
38 Portugal 27432 T 2421 2421
39 Portugal 27433 A 2421 2421
40 Portugal 27434 C T 2421 2405 Thr14Ile
41 Portugal 27435 T 2421 2421
42 Portugal 27436 T 2421 2421
43 Portugal 27437 G 2421 2421
44 Portugal 27438 T 2421 2421
45 Portugal 27439 G 2421 2421
46 Portugal 27440 A 2421 2421
47 Portugal 27441 G 2421 2421
48 Portugal 27442 C 2421 2421
49 Portugal 27443 T 2421 2421
50 Portugal 27444 T 2421 2421
51 Portugal 27445 T 2421 2421
52 Portugal 27446 A 2421 2421
53 Portugal 27447 T 2421 2421
54 Portugal 27448 C 2421 2421
55 Portugal 27449 A 2421 2421
56 Portugal 27450 C 2421 2421
57 Portugal 27451 T 2421 2421
58 Portugal 27452 A 2421 2421
59 Portugal 27453 C 2421 2421
60 Portugal 27454 C 2421 2421
61 Portugal 27455 A 2421 2421
62 Portugal 27456 A 2421 2421
63 Portugal 27457 G 2421 2421
64 Portugal 27458 A 2421 2421
65 Portugal 27459 G T 2421 2419 Glu22Asp
66 Portugal 27460 T 2421 2421
67 Portugal 27461 G 2421 2421
68 Portugal 27462 T 2421 2421
69 Portugal 27463 G T 2421 2420 Val24Phe
70 Portugal 27464 T 2421 2421
71 Portugal 27465 T 2421 2421
72 Portugal 27466 A 2421 2421
73 Portugal 27467 G 2421 2421
74 Portugal 27468 A 2421 2421
75 Portugal 27469 G 2421 2421
76 Portugal 27470 G 2421 2421
77 Portugal 27471 T 2421 2421
78 Portugal 27472 A 2421 2421
79 Portugal 27473 C 2421 2421
80 Portugal 27474 A 2421 2421
81 Portugal 27475 A 2421 2421
82 Portugal 27476 C T 2421 2418 Thr28Ile
83 Portugal 27477 A 2421 2421
84 Portugal 27478 G T 2421 2420 Val29Leu
85 Portugal 27479 T 2421 2421
86 Portugal 27480 A 2421 2421
87 Portugal 27481 C 2421 2421
88 Portugal 27482 T 2421 2421
89 Portugal 27483 T 2421 2421
90 Portugal 27484 T C 2421 2420 Leu31Leu
91 Portugal 27485 T 2421 2421
92 Portugal 27486 A 2421 2421
93 Portugal 27487 A 2421 2421
94 Portugal 27488 A 2421 2421
95 Portugal 27489 A 2420 2420
96 Portugal 27490 G 2420 2420
97 Portugal 27491 A 2420 2420
98 Portugal 27492 A G 2420 2417 Glu33Glu
99 Portugal 27493 C T 2420 2419 Pro34Ser
100 Portugal 27494 C T 2419 2418 Pro34Leu
101 Portugal 27495 T 2418 2418
102 Portugal 27496 T 2418 2418
103 Portugal 27497 G 2417 2417
104 Portugal 27498 C 2417 2417
105 Portugal 27499 T 2417 2417
106 Portugal 27500 C 2417 2417
107 Portugal 27501 T 2417 2417
108 Portugal 27502 T 2417 2417
109 Portugal 27503 C T 2417 2416 Ser37Phe
110 Portugal 27504 T 2417 2417
111 Portugal 27505 G 2417 2417
112 Portugal 27506 G T 2417 2414 Gly38Val
113 Portugal 27507 A 2417 2417
114 Portugal 27508 A 2417 2417
115 Portugal 27509 C T 2414 2410 Thr39Ile
116 Portugal 27510 A 2414 2412
117 Portugal 27511 T 2414 2414
118 Portugal 27512 A 2414 2413
119 Portugal 27513 C 2414 2414
120 Portugal 27514 G 2412 2411
121 Portugal 27515 A 2405 2405
122 Portugal 27516 G 2405 2404
123 Portugal 27517 G 2404 2404
124 Portugal 27518 G 2403 2403
125 Portugal 27519 C 2396 2396
126 Portugal 27520 A 2377 2375
127 Portugal 27521 A 2376 2374
128 Portugal 27522 T 2375 2374
129 Portugal 27523 T 2374 2373
130 Portugal 27524 C 2373 2372
131 Portugal 27525 A 2361 2355
132 Portugal 27526 C 2360 2353
133 Portugal 27527 C T 2308 2286 Pro45Leu
134 Portugal 27528 A 2291 2263
135 Portugal 27529 T 2291 2264
136 Portugal 27530 T 2291 2270
137 Portugal 27531 T 2291 2270
138 Portugal 27532 C T 2291 2268 His47Tyr
139 Portugal 27533 A 2291 2269
140 Portugal 27534 T 2290 2270
141 Portugal 27535 C 2289 2269
142 Portugal 27536 C 2289 2271
143 Portugal 27537 T 2289 2270
144 Portugal 27538 C 2289 2272
145 Portugal 27539 T 2289 2267
146 Portugal 27540 A 2289 2273
147 Portugal 27541 G 2289 2275
148 Portugal 27542 C 2289 2275
149 Portugal 27543 T 2289 2274
150 Portugal 27544 G 2289 2275
151 Portugal 27545 A 2289 2273
152 Portugal 27546 T 2289 2274
153 Portugal 27547 A 2289 2275
154 Portugal 27548 A 2288 2273
155 Portugal 27549 C T 2288 2272 Asn52Asn
156 Portugal 27550 A 2288 2277
157 Portugal 27551 A 2288 2279
158 Portugal 27552 A 2288 2279
159 Portugal 27553 T 2288 2277
160 Portugal 27554 T 2288 2278
161 Portugal 27555 T A 2288 2274 Phe54Leu
162 Portugal 27556 G 2288 2279
163 Portugal 27557 C 2288 2280
164 Portugal 27558 A 2288 2282
165 Portugal 27559 C 2288 2281
166 Portugal 27560 T 2288 2282
167 Portugal 27561 G T 2288 2281 Leu56Leu
168 Portugal 27562 A 2288 2273
169 Portugal 27563 C 2288 2282
170 Portugal 27564 T 2288 2283
171 Portugal 27565 T 2288 2283
172 Portugal 27566 G 2288 2285
173 Portugal 27567 C 2288 2285
174 Portugal 27568 T 2288 2286
175 Portugal 27569 T 2288 2286
176 Portugal 27570 T 2288 2286
177 Portugal 27571 A 2288 2284
178 Portugal 27572 G 2288 2285
179 Portugal 27573 C 2288 2284
180 Portugal 27574 A 2287 2281
181 Portugal 27575 C T 2287 2281 Thr61Ile
182 Portugal 27576 T 2287 2282
183 Portugal 27577 C T 2287 2284 Gln62*
184 Portugal 27578 A 2287 2286
185 Portugal 27579 A 2287 2286
186 Portugal 27580 T 2286 2285
187 Portugal 27581 T 2286 2285
188 Portugal 27582 T 2286 2285
189 Portugal 27583 G 2285 2284
190 Portugal 27584 C 2285 2284
191 Portugal 27585 T 2285 2284
192 Portugal 27586 T 2285 2283
193 Portugal 27587 T 2285 2284
194 Portugal 27588 T 2285 2284
195 Portugal 27589 G 2285 2284
196 Portugal 27590 C 2285 2284
197 Portugal 27591 T 2285 2285
198 Portugal 27592 T 2285 2285
199 Portugal 27593 G 2285 2285
200 Portugal 27594 T 2285 2285
201 Portugal 27595 C 2285 2285
202 Portugal 27596 C 2285 2285
203 Portugal 27597 T 2285 2285
204 Portugal 27598 G A 2285 2283 Asp69Asn
205 Portugal 27599 A 2285 2280
206 Portugal 27600 C T 2285 2272 Asp69Asp
207 Portugal 27601 G 2285 2284
208 Portugal 27602 G 2285 2285
209 Portugal 27603 C T 2285 2283 Gly70Gly
210 Portugal 27604 G 2285 2284
211 Portugal 27605 T 2285 2285
212 Portugal 27606 A 2283 2283
213 Portugal 27607 A 2282 2282
214 Portugal 27608 A T 2281 2279 Lys72Ile
215 Portugal 27609 A 2280 2280
216 Portugal 27610 C T 2280 2275 His73Tyr
217 Portugal 27611 A 2279 2278
218 Portugal 27612 C 2279 2278
219 Portugal 27613 G 2279 2278
220 Portugal 27614 T 2279 2278
221 Portugal 27615 C 2279 2277
222 Portugal 27616 T 2279 2277
223 Portugal 27617 A 2279 2277
224 Portugal 27618 T 2278 2274
225 Portugal 27619 C 2278 2275
226 Portugal 27620 A 2277 2274
227 Portugal 27621 G T 2276 2270 Gln76His
228 Portugal 27622 T 2276 2270
229 Portugal 27623 T 2276 2272
230 Portugal 27624 A 2276 2268
231 Portugal 27625 C 2276 2270
232 Portugal 27626 G 2276 2268
233 Portugal 27627 T 2275 2267
234 Portugal 27628 G 2275 2269
235 Portugal 27629 C 2275 2267
236 Portugal 27630 C T 2274 2263 Ala79Ala
237 Portugal 27631 A 2274 2267
238 Portugal 27632 G T 2274 2263 Arg80Ile
239 Portugal 27633 A 2273 2266
240 Portugal 27634 T C 2274 2265 Ser81Pro
241 Portugal 27635 C T 2274 2265 Ser81Leu
242 Portugal 27636 A T 2274 2266 Ser81Ser
243 Portugal 27637 G A 2274 2267 Val82Ile
244 Portugal 27638 T 2274 2267
245 Portugal 27639 T C 2274 2262 Val82Val
246 Portugal 27640 T 2274 2267
247 Portugal 27641 C 2274 2270
248 Portugal 27642 A 2274 2269
249 Portugal 27643 C 2274 2270
250 Portugal 27644 C 2274 2270
251 Portugal 27645 T 2274 2270
252 Portugal 27646 A 2274 2268
253 Portugal 27647 A G 2274 2266 Lys85Arg
254 Portugal 27648 A 2273 2266
255 Portugal 27649 C 2273 2269
256 Portugal 27650 T 2273 2264
257 Portugal 27651 G 2273 2262
258 Portugal 27652 T 2273 2265
259 Portugal 27653 T 2273 2264
260 Portugal 27654 C 2273 2264
261 Portugal 27655 A 2273 2263
262 Portugal 27656 T 2273 2264
263 Portugal 27657 C 2273 2262
264 Portugal 27658 A 2273 2262
265 Portugal 27659 G T 2273 2260 Arg89Ile
266 Portugal 27660 A 2273 2263
267 Portugal 27661 C 2273 2259
268 Portugal 27662 A 2273 2264
269 Portugal 27663 A 2273 2265
270 Portugal 27664 G 2273 2265
271 Portugal 27665 A 2273 2263
272 Portugal 27666 G A 2273 2262 Glu91Glu
273 Portugal 27667 G 2273 2266
274 Portugal 27668 A 2273 2265
275 Portugal 27669 A 2273 2266
276 Portugal 27670 G 2273 2265
277 Portugal 27671 T 2273 2261
278 Portugal 27672 T 2273 2265
279 Portugal 27673 C T 2273 2265 Gln94*
280 Portugal 27674 A 2273 2267
281 Portugal 27675 A 2273 2267
282 Portugal 27676 G C 2273 2266 Glu95Gln
283 Portugal 27677 A 2273 2269
284 Portugal 27678 A 2273 2268
285 Portugal 27679 C 2273 2268
286 Portugal 27680 T 2273 2267
287 Portugal 27681 T 2273 2270
288 Portugal 27682 T 2273 2270
289 Portugal 27683 A 2273 2270
290 Portugal 27684 C T 2273 2269 Tyr97Tyr
291 Portugal 27685 T 2273 2271
292 Portugal 27686 C 2272 2269
293 Portugal 27687 T 2272 2269
294 Portugal 27688 C 2272 2270
295 Portugal 27689 C T 2272 2264 Pro99Leu
296 Portugal 27690 A T 2272 2268 Pro99Pro
297 Portugal 27691 A 2271 2269
298 Portugal 27692 T 2271 2270
299 Portugal 27693 T C 2271 2270 Ile100Ile
300 Portugal 27694 T C 2271 2270 Phe101Leu
301 Portugal 27695 T 2271 2270
302 Portugal 27696 T 2271 2270
303 Portugal 27697 C 2271 2270
304 Portugal 27698 T 2271 2269
305 Portugal 27699 T 2271 2269
306 Portugal 27700 A 2271 2271
307 Portugal 27701 T 2271 2271
308 Portugal 27702 T 2271 2269
309 Portugal 27703 G T 2271 2263 Val104Phe
310 Portugal 27704 T 2271 2270
311 Portugal 27705 T 2271 2271
312 Portugal 27706 G 2271 2270
313 Portugal 27707 C 2271 2271
314 Portugal 27708 G 2271 2271
315 Portugal 27709 G 2271 2271
316 Portugal 27710 C 2270 2269
317 Portugal 27711 A T 2270 2266 Ala106Ala
318 Portugal 27712 A 2269 2269
319 Portugal 27713 T 2268 2268
320 Portugal 27714 A 2268 2268
321 Portugal 27715 G T 2268 2267 Val108Leu
322 Portugal 27716 T 2268 2268
323 Portugal 27717 G 2268 2268
324 Portugal 27718 T 2268 2266
325 Portugal 27719 T 2268 2268
326 Portugal 27720 T 2268 2268
327 Portugal 27721 A 2268 2265
328 Portugal 27722 T 2268 2266
329 Portugal 27723 A 2268 2265
330 Portugal 27724 A 2268 2265
331 Portugal 27725 C 2267 2265
332 Portugal 27726 A 2266 2265
333 Portugal 27727 C 2266 2265
334 Portugal 27728 T 2266 2265
335 Portugal 27729 T 2266 2266
336 Portugal 27730 T 2266 2265
337 Portugal 27731 G 2266 2264
338 Portugal 27732 C T 2266 2263 Cys113Cys
339 Portugal 27733 T 2266 2263
340 Portugal 27734 T 2266 2265
341 Portugal 27735 C 2266 2265
342 Portugal 27736 A 2265 2261
343 Portugal 27737 C 2264 2263
344 Portugal 27738 A 2264 2260
345 Portugal 27739 C 2264 2264
346 Portugal 27740 T 2264 2264
347 Portugal 27741 C T 2264 2262 Leu116Leu
348 Portugal 27742 A 2264 2263
349 Portugal 27743 A 2264 2263
350 Portugal 27744 A 2263 2261
351 Portugal 27745 A 2262 2261
352 Portugal 27746 G 2262 2261
353 Portugal 27747 A 2262 2261
354 Portugal 27748 A 2261 2258
355 Portugal 27749 A 2261 2261
356 Portugal 27750 G 2261 2260
357 Portugal 27751 A T 2261 2236 Thr120Ser
358 Portugal 27752 C 2261 2261
359 Portugal 27753 A 2261 2261
360 Portugal 27754 G 2261 2260
361 Portugal 27755 A 2261 2259
362 Portugal 27756 A 2260 2260
363 Portugal 27757 T 2259 2259
364 Portugal 27758 G 2258 2258
365 Portugal 27759 A 2255 2255