National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18         1                            
D     6     1                                
E 1   24     1           1                    
F     30         1                            
G     12 1                                    
H     9                                      
I     25                                   1  
K     21                                      
L     45         1         2                  
M     6                                      
N     6                                      
P     18                               1      
Q     15             1                        
R     15           1                          
S     21                                      
T     30               3             1        
V     24         1                            
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 27394 A 434 434
1 Poland 27395 T 434 434
2 Poland 27396 G 434 434
3 Poland 27397 A 434 434
4 Poland 27398 A 434 434
5 Poland 27399 A 434 434
6 Poland 27400 A 434 434
7 Poland 27401 T 434 434
8 Poland 27402 T 434 434
9 Poland 27403 A 434 434
10 Poland 27404 T 434 434
11 Poland 27405 T 434 434
12 Poland 27406 C 434 434
13 Poland 27407 T 434 434
14 Poland 27408 T 434 434
15 Poland 27409 T 434 434
16 Poland 27410 T 434 434
17 Poland 27411 C 434 434
18 Poland 27412 T 434 434
19 Poland 27413 T 434 434
20 Poland 27414 G 434 434
21 Poland 27415 G 434 434
22 Poland 27416 C 434 434
23 Poland 27417 A 434 434
24 Poland 27418 C 434 434
25 Poland 27419 T 434 434
26 Poland 27420 G 434 434
27 Poland 27421 A 434 434
28 Poland 27422 T 434 434
29 Poland 27423 A 434 434
30 Poland 27424 A 434 434
31 Poland 27425 C T 434 433 Thr11Ile
32 Poland 27426 A 434 434
33 Poland 27427 C 434 434
34 Poland 27428 T 434 434
35 Poland 27429 C T 434 433 Leu12Leu
36 Poland 27430 G 434 434
37 Poland 27431 C 434 434
38 Poland 27432 T 434 434
39 Poland 27433 A 434 434
40 Poland 27434 C T 434 428 Thr14Ile
41 Poland 27435 T 434 434
42 Poland 27436 T 434 434
43 Poland 27437 G 434 434
44 Poland 27438 T 434 434
45 Poland 27439 G 434 434
46 Poland 27440 A 434 434
47 Poland 27441 G 434 434
48 Poland 27442 C 434 434
49 Poland 27443 T 434 434
50 Poland 27444 T 434 434
51 Poland 27445 T 434 434
52 Poland 27446 A 434 434
53 Poland 27447 T 434 434
54 Poland 27448 C 434 434
55 Poland 27449 A 434 434
56 Poland 27450 C 434 434
57 Poland 27451 T 434 434
58 Poland 27452 A 434 434
59 Poland 27453 C 434 434
60 Poland 27454 C 434 434
61 Poland 27455 A 434 434
62 Poland 27456 A 434 434
63 Poland 27457 G 434 434
64 Poland 27458 A 434 434
65 Poland 27459 G 434 434
66 Poland 27460 T 434 434
67 Poland 27461 G 434 434
68 Poland 27462 T 434 434
69 Poland 27463 G 434 434
70 Poland 27464 T 434 434
71 Poland 27465 T 434 434
72 Poland 27466 A 434 434
73 Poland 27467 G 434 434
74 Poland 27468 A 434 434
75 Poland 27469 G 434 434
76 Poland 27470 G 434 434
77 Poland 27471 T 434 434
78 Poland 27472 A 434 434
79 Poland 27473 C 434 434
80 Poland 27474 A 434 434
81 Poland 27475 A 434 434
82 Poland 27476 C G 434 433 Thr28Arg
83 Poland 27477 A 434 434
84 Poland 27478 G 434 434
85 Poland 27479 T 434 434
86 Poland 27480 A 434 434
87 Poland 27481 C 434 434
88 Poland 27482 T 434 434
89 Poland 27483 T 434 434
90 Poland 27484 T 434 434
91 Poland 27485 T 434 434
92 Poland 27486 A 434 434
93 Poland 27487 A 434 434
94 Poland 27488 A 434 434
95 Poland 27489 A 434 434
96 Poland 27490 G A 434 433 Glu33Lys
97 Poland 27491 A 434 434
98 Poland 27492 A 434 434
99 Poland 27493 C 434 434
100 Poland 27494 C 434 434
101 Poland 27495 T 434 434
102 Poland 27496 T 434 434
103 Poland 27497 G 434 434
104 Poland 27498 C 434 434
105 Poland 27499 T 434 434
106 Poland 27500 C 434 434
107 Poland 27501 T 434 434
108 Poland 27502 T 434 434
109 Poland 27503 C 434 434
110 Poland 27504 T 434 434
111 Poland 27505 G 434 434
112 Poland 27506 G C 434 433 Gly38Ala
113 Poland 27507 A 434 434
114 Poland 27508 A 434 434
115 Poland 27509 C 434 434
116 Poland 27510 A 434 434
117 Poland 27511 T 434 434
118 Poland 27512 A 433 433
119 Poland 27513 C 433 433
120 Poland 27514 G 433 433
121 Poland 27515 A 433 433
122 Poland 27516 G T 433 432 Glu41Asp
123 Poland 27517 G 433 433
124 Poland 27518 G 433 433
125 Poland 27519 C 433 433
126 Poland 27520 A 433 433
127 Poland 27521 A 433 433
128 Poland 27522 T 433 433
129 Poland 27523 T 433 433
130 Poland 27524 C 433 433
131 Poland 27525 A 433 433
132 Poland 27526 C 433 433
133 Poland 27527 C 433 433
134 Poland 27528 A 433 433
135 Poland 27529 T 433 433
136 Poland 27530 T 433 433
137 Poland 27531 T 433 433
138 Poland 27532 C 433 433
139 Poland 27533 A 433 433
140 Poland 27534 T 433 433
141 Poland 27535 C 433 433
142 Poland 27536 C 433 433
143 Poland 27537 T 433 433
144 Poland 27538 C 433 433
145 Poland 27539 T 433 433
146 Poland 27540 A 433 433
147 Poland 27541 G 433 433
148 Poland 27542 C 433 433
149 Poland 27543 T 433 433
150 Poland 27544 G 433 433
151 Poland 27545 A 433 433
152 Poland 27546 T 433 433
153 Poland 27547 A 433 433
154 Poland 27548 A 433 433
155 Poland 27549 C 433 433
156 Poland 27550 A 433 433
157 Poland 27551 A 433 433
158 Poland 27552 A 433 433
159 Poland 27553 T 433 433
160 Poland 27554 T 433 433
161 Poland 27555 T 433 433
162 Poland 27556 G 433 433
163 Poland 27557 C 433 433
164 Poland 27558 A 433 433
165 Poland 27559 C 433 433
166 Poland 27560 T 433 433
167 Poland 27561 G 433 433
168 Poland 27562 A 433 433
169 Poland 27563 C 433 433
170 Poland 27564 T 433 433
171 Poland 27565 T 433 433
172 Poland 27566 G T 433 432 Cys58Phe
173 Poland 27567 C 433 433
174 Poland 27568 T 433 433
175 Poland 27569 T 433 433
176 Poland 27570 T 433 433
177 Poland 27571 A 433 433
178 Poland 27572 G 433 433
179 Poland 27573 C 433 433
180 Poland 27574 A 431 431
181 Poland 27575 C 431 431
182 Poland 27576 T 431 431
183 Poland 27577 C 431 431
184 Poland 27578 A 431 431
185 Poland 27579 A 431 431
186 Poland 27580 T 431 431
187 Poland 27581 T 431 431
188 Poland 27582 T 431 431
189 Poland 27583 G 431 431
190 Poland 27584 C 431 431
191 Poland 27585 T 431 431
192 Poland 27586 T 431 431
193 Poland 27587 T 431 431
194 Poland 27588 T 431 431
195 Poland 27589 G 431 431
196 Poland 27590 C 431 430
197 Poland 27591 T 431 431
198 Poland 27592 T 431 431
199 Poland 27593 G 431 431
200 Poland 27594 T 431 431
201 Poland 27595 C 431 431
202 Poland 27596 C 431 431
203 Poland 27597 T 431 431
204 Poland 27598 G 431 431
205 Poland 27599 A 431 429
206 Poland 27600 C T 431 428 Asp69Asp
207 Poland 27601 G 431 429
208 Poland 27602 G 431 429
209 Poland 27603 C 431 429
210 Poland 27604 G 431 429
211 Poland 27605 T 431 429
212 Poland 27606 A 431 429
213 Poland 27607 A 431 429
214 Poland 27608 A 431 429
215 Poland 27609 A 431 429
216 Poland 27610 C 431 429
217 Poland 27611 A 431 429
218 Poland 27612 C 431 429
219 Poland 27613 G 431 429
220 Poland 27614 T 431 429
221 Poland 27615 C 431 429
222 Poland 27616 T 431 429
223 Poland 27617 A 431 429
224 Poland 27618 T 431 429
225 Poland 27619 C 431 429
226 Poland 27620 A 431 429
227 Poland 27621 G T 431 428 Gln76His
228 Poland 27622 T 431 429
229 Poland 27623 T 431 429
230 Poland 27624 A G 431 429 Leu77Leu
231 Poland 27625 C 431 431
232 Poland 27626 G 431 431
233 Poland 27627 T 431 431
234 Poland 27628 G 431 431
235 Poland 27629 C 431 431
236 Poland 27630 C 431 431
237 Poland 27631 A 431 431
238 Poland 27632 G 431 431
239 Poland 27633 A 431 431
240 Poland 27634 T 433 433
241 Poland 27635 C 433 433
242 Poland 27636 A 433 433
243 Poland 27637 G 433 433
244 Poland 27638 T 433 433
245 Poland 27639 T 433 433
246 Poland 27640 T 433 433
247 Poland 27641 C 433 433
248 Poland 27642 A 433 433
249 Poland 27643 C 433 433
250 Poland 27644 C 433 433
251 Poland 27645 T 433 433
252 Poland 27646 A 433 433
253 Poland 27647 A 433 433
254 Poland 27648 A 433 433
255 Poland 27649 C 433 433
256 Poland 27650 T 433 433
257 Poland 27651 G 433 433
258 Poland 27652 T 433 433
259 Poland 27653 T 433 433
260 Poland 27654 C 433 433
261 Poland 27655 A G 433 427 Ile88Val
262 Poland 27656 T 433 433
263 Poland 27657 C 433 433
264 Poland 27658 A G 433 432 Arg89Gly
265 Poland 27659 G 433 433
266 Poland 27660 A 433 433
267 Poland 27661 C 433 433
268 Poland 27662 A 433 433
269 Poland 27663 A 433 433
270 Poland 27664 G 433 433
271 Poland 27665 A 433 433
272 Poland 27666 G 433 433
273 Poland 27667 G 433 433
274 Poland 27668 A 433 433
275 Poland 27669 A 433 433
276 Poland 27670 G 433 433
277 Poland 27671 T 433 433
278 Poland 27672 T 433 433
279 Poland 27673 C 433 433
280 Poland 27674 A 433 433
281 Poland 27675 A 433 433
282 Poland 27676 G 433 433
283 Poland 27677 A 433 433
284 Poland 27678 A 433 433
285 Poland 27679 C 433 433
286 Poland 27680 T 433 433
287 Poland 27681 T 433 433
288 Poland 27682 T 433 433
289 Poland 27683 A 433 433
290 Poland 27684 C T 433 428 Tyr97Tyr
291 Poland 27685 T 433 433
292 Poland 27686 C 433 433
293 Poland 27687 T 433 433
294 Poland 27688 C T 433 432 Pro99Ser
295 Poland 27689 C 433 433
296 Poland 27690 A 433 433
297 Poland 27691 A 433 433
298 Poland 27692 T 433 433
299 Poland 27693 T 433 433
300 Poland 27694 T 433 433
301 Poland 27695 T 433 433
302 Poland 27696 T 433 433
303 Poland 27697 C T 433 432 Leu102Phe
304 Poland 27698 T 433 433
305 Poland 27699 T 433 433
306 Poland 27700 A 433 433
307 Poland 27701 T 433 433
308 Poland 27702 T 433 433
309 Poland 27703 G T 433 432 Val104Phe
310 Poland 27704 T 433 433
311 Poland 27705 T 433 433
312 Poland 27706 G 433 433
313 Poland 27707 C 433 433
314 Poland 27708 G 433 433
315 Poland 27709 G 433 433
316 Poland 27710 C 433 433
317 Poland 27711 A 433 433
318 Poland 27712 A 433 433
319 Poland 27713 T 433 433
320 Poland 27714 A 433 433
321 Poland 27715 G 433 433
322 Poland 27716 T 433 433
323 Poland 27717 G 433 433
324 Poland 27718 T 433 433
325 Poland 27719 T 433 433
326 Poland 27720 T 433 433
327 Poland 27721 A 433 433
328 Poland 27722 T 433 433
329 Poland 27723 A 433 433
330 Poland 27724 A 433 433
331 Poland 27725 C 433 433
332 Poland 27726 A 433 433
333 Poland 27727 C 433 433
334 Poland 27728 T 433 433
335 Poland 27729 T 433 433
336 Poland 27730 T 433 433
337 Poland 27731 G 433 433
338 Poland 27732 C 433 433
339 Poland 27733 T 433 433
340 Poland 27734 T 433 433
341 Poland 27735 C T 433 432 Phe114Phe
342 Poland 27736 A 433 433
343 Poland 27737 C T 433 432 Thr115Ile
344 Poland 27738 A 433 433
345 Poland 27739 C 433 433
346 Poland 27740 T 433 433
347 Poland 27741 C 433 433
348 Poland 27742 A 433 433
349 Poland 27743 A 433 433
350 Poland 27744 A 433 433
351 Poland 27745 A 433 433
352 Poland 27746 G 433 433
353 Poland 27747 A 433 433
354 Poland 27748 A 433 433
355 Poland 27749 A 433 433
356 Poland 27750 G 433 433
357 Poland 27751 A 433 433
358 Poland 27752 C 433 433
359 Poland 27753 A 433 433
360 Poland 27754 G T 433 431 Glu121*
361 Poland 27755 A 433 433
362 Poland 27756 A 433 433
363 Poland 27757 T 433 433
364 Poland 27758 G 433 433
365 Poland 27759 A 433 433