National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                   1  
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45         1                            
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24     1   1                            
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Philippines 27394 A 33 33
1 Philippines 27395 T 33 33
2 Philippines 27396 G 33 33
3 Philippines 27397 A 33 33
4 Philippines 27398 A 33 33
5 Philippines 27399 A 33 33
6 Philippines 27400 A 33 33
7 Philippines 27401 T 33 33
8 Philippines 27402 T 33 33
9 Philippines 27403 A 33 33
10 Philippines 27404 T 33 33
11 Philippines 27405 T 33 33
12 Philippines 27406 C 33 33
13 Philippines 27407 T 33 33
14 Philippines 27408 T 33 33
15 Philippines 27409 T 33 33
16 Philippines 27410 T 33 33
17 Philippines 27411 C 33 33
18 Philippines 27412 T 33 33
19 Philippines 27413 T 33 33
20 Philippines 27414 G 33 33
21 Philippines 27415 G 33 33
22 Philippines 27416 C T 33 32 Ala8Val
23 Philippines 27417 A 33 33
24 Philippines 27418 C 33 33
25 Philippines 27419 T 33 33
26 Philippines 27420 G 33 33
27 Philippines 27421 A 33 33
28 Philippines 27422 T 33 33
29 Philippines 27423 A 33 33
30 Philippines 27424 A 33 33
31 Philippines 27425 C 33 33
32 Philippines 27426 A 33 33
33 Philippines 27427 C 33 33
34 Philippines 27428 T 33 33
35 Philippines 27429 C 33 33
36 Philippines 27430 G 33 33
37 Philippines 27431 C 33 33
38 Philippines 27432 T 33 33
39 Philippines 27433 A 33 33
40 Philippines 27434 C 33 33
41 Philippines 27435 T 33 33
42 Philippines 27436 T 33 33
43 Philippines 27437 G 33 33
44 Philippines 27438 T 33 33
45 Philippines 27439 G 33 33
46 Philippines 27440 A 33 33
47 Philippines 27441 G 33 33
48 Philippines 27442 C 33 33
49 Philippines 27443 T 33 33
50 Philippines 27444 T 33 33
51 Philippines 27445 T 33 33
52 Philippines 27446 A 33 33
53 Philippines 27447 T 33 33
54 Philippines 27448 C 33 33
55 Philippines 27449 A 33 33
56 Philippines 27450 C 33 33
57 Philippines 27451 T 33 33
58 Philippines 27452 A 33 33
59 Philippines 27453 C 33 33
60 Philippines 27454 C 33 33
61 Philippines 27455 A 33 33
62 Philippines 27456 A 33 33
63 Philippines 27457 G 33 33
64 Philippines 27458 A 33 33
65 Philippines 27459 G 33 33
66 Philippines 27460 T 33 33
67 Philippines 27461 G 33 33
68 Philippines 27462 T 33 33
69 Philippines 27463 G T 33 32 Val24Phe
70 Philippines 27464 T 33 33
71 Philippines 27465 T 33 33
72 Philippines 27466 A 33 33
73 Philippines 27467 G 33 33
74 Philippines 27468 A 33 33
75 Philippines 27469 G 33 33
76 Philippines 27470 G 33 33
77 Philippines 27471 T 33 33
78 Philippines 27472 A 33 33
79 Philippines 27473 C 33 33
80 Philippines 27474 A 33 33
81 Philippines 27475 A 33 33
82 Philippines 27476 C 33 33
83 Philippines 27477 A 33 33
84 Philippines 27478 G 33 33
85 Philippines 27479 T 33 33
86 Philippines 27480 A 33 33
87 Philippines 27481 C T 33 32 Leu30Phe
88 Philippines 27482 T 33 33
89 Philippines 27483 T 33 33
90 Philippines 27484 T 33 33
91 Philippines 27485 T 33 33
92 Philippines 27486 A 33 33
93 Philippines 27487 A 33 33
94 Philippines 27488 A 33 33
95 Philippines 27489 A 33 33
96 Philippines 27490 G 33 33
97 Philippines 27491 A 33 33
98 Philippines 27492 A 33 33
99 Philippines 27493 C 33 33
100 Philippines 27494 C 33 33
101 Philippines 27495 T 33 33
102 Philippines 27496 T 33 33
103 Philippines 27497 G 33 33
104 Philippines 27498 C 33 33
105 Philippines 27499 T 33 33
106 Philippines 27500 C 33 33
107 Philippines 27501 T 33 33
108 Philippines 27502 T 33 33
109 Philippines 27503 C 33 33
110 Philippines 27504 T 33 33
111 Philippines 27505 G 33 33
112 Philippines 27506 G 33 33
113 Philippines 27507 A 33 33
114 Philippines 27508 A 33 33
115 Philippines 27509 C 33 33
116 Philippines 27510 A 33 33
117 Philippines 27511 T 33 33
118 Philippines 27512 A 8 8
119 Philippines 27513 C 7 7
120 Philippines 27514 G 7 7
121 Philippines 27515 A 7 7
122 Philippines 27516 G 7 7
123 Philippines 27517 G 7 7
124 Philippines 27518 G 7 7
125 Philippines 27519 C 7 7
126 Philippines 27520 A 7 7
127 Philippines 27521 A 7 7
128 Philippines 27522 T 7 7
129 Philippines 27523 T 7 7
130 Philippines 27524 C 7 7
131 Philippines 27525 A 7 7
132 Philippines 27526 C 7 7
133 Philippines 27527 C 7 7
134 Philippines 27528 A 7 7
135 Philippines 27529 T 7 7
136 Philippines 27530 T 7 7
137 Philippines 27531 T 7 7
138 Philippines 27532 C 7 7
139 Philippines 27533 A 7 7
140 Philippines 27534 T 7 7
141 Philippines 27535 C 7 7
142 Philippines 27536 C 7 7
143 Philippines 27537 T 7 7
144 Philippines 27538 C 7 7
145 Philippines 27539 T 7 7
146 Philippines 27540 A 7 7
147 Philippines 27541 G 7 7
148 Philippines 27542 C 7 7
149 Philippines 27543 T 7 7
150 Philippines 27544 G 7 7
151 Philippines 27545 A 7 7
152 Philippines 27546 T 7 7
153 Philippines 27547 A 7 7
154 Philippines 27548 A 7 7
155 Philippines 27549 C 7 7
156 Philippines 27550 A 7 7
157 Philippines 27551 A 7 7
158 Philippines 27552 A 7 7
159 Philippines 27553 T 7 7
160 Philippines 27554 T 7 7
161 Philippines 27555 T 7 7
162 Philippines 27556 G 7 7
163 Philippines 27557 C 7 7
164 Philippines 27558 A 7 7
165 Philippines 27559 C 7 7
166 Philippines 27560 T 7 7
167 Philippines 27561 G 7 7
168 Philippines 27562 A 7 7
169 Philippines 27563 C 7 7
170 Philippines 27564 T 7 7
171 Philippines 27565 T 7 7
172 Philippines 27566 G 7 7
173 Philippines 27567 C 7 7
174 Philippines 27568 T 7 7
175 Philippines 27569 T 7 7
176 Philippines 27570 T 7 7
177 Philippines 27571 A 7 7
178 Philippines 27572 G 7 7
179 Philippines 27573 C 7 7
180 Philippines 27574 A 7 7
181 Philippines 27575 C 7 7
182 Philippines 27576 T 7 7
183 Philippines 27577 C 7 7
184 Philippines 27578 A 7 7
185 Philippines 27579 A 7 7
186 Philippines 27580 T 7 7
187 Philippines 27581 T 7 7
188 Philippines 27582 T 7 7
189 Philippines 27583 G 7 7
190 Philippines 27584 C 7 7
191 Philippines 27585 T 7 7
192 Philippines 27586 T 7 7
193 Philippines 27587 T 7 7
194 Philippines 27588 T 7 7
195 Philippines 27589 G 7 7
196 Philippines 27590 C 7 7
197 Philippines 27591 T 7 7
198 Philippines 27592 T 7 7
199 Philippines 27593 G 7 7
200 Philippines 27594 T 7 7
201 Philippines 27595 C 7 7
202 Philippines 27596 C 7 7
203 Philippines 27597 T 7 7
204 Philippines 27598 G 7 7
205 Philippines 27599 A 7 7
206 Philippines 27600 C 7 7
207 Philippines 27601 G 7 7
208 Philippines 27602 G 7 7
209 Philippines 27603 C 7 7
210 Philippines 27604 G 7 7
211 Philippines 27605 T 7 7
212 Philippines 27606 A 7 7
213 Philippines 27607 A 7 7
214 Philippines 27608 A 7 7
215 Philippines 27609 A 7 7
216 Philippines 27610 C 7 7
217 Philippines 27611 A 7 7
218 Philippines 27612 C 7 7
219 Philippines 27613 G 7 7
220 Philippines 27614 T 7 7
221 Philippines 27615 C 7 7
222 Philippines 27616 T 7 7
223 Philippines 27617 A 7 7
224 Philippines 27618 T 7 7
225 Philippines 27619 C 7 7
226 Philippines 27620 A 7 7
227 Philippines 27621 G 7 7
228 Philippines 27622 T 7 7
229 Philippines 27623 T 7 7
230 Philippines 27624 A 7 7
231 Philippines 27625 C 7 7
232 Philippines 27626 G 7 7
233 Philippines 27627 T 7 7
234 Philippines 27628 G 7 7
235 Philippines 27629 C 7 7
236 Philippines 27630 C 7 7
237 Philippines 27631 A 7 7
238 Philippines 27632 G 7 7
239 Philippines 27633 A 7 7
240 Philippines 27634 T 7 7
241 Philippines 27635 C 7 7
242 Philippines 27636 A 7 7
243 Philippines 27637 G 7 7
244 Philippines 27638 T 7 7
245 Philippines 27639 T 7 7
246 Philippines 27640 T 7 7
247 Philippines 27641 C 7 7
248 Philippines 27642 A 7 7
249 Philippines 27643 C 7 7
250 Philippines 27644 C 7 7
251 Philippines 27645 T 7 7
252 Philippines 27646 A 7 7
253 Philippines 27647 A 7 7
254 Philippines 27648 A 7 7
255 Philippines 27649 C 7 7
256 Philippines 27650 T 7 7
257 Philippines 27651 G 7 7
258 Philippines 27652 T 7 7
259 Philippines 27653 T 7 7
260 Philippines 27654 C 7 7
261 Philippines 27655 A 7 7
262 Philippines 27656 T 7 7
263 Philippines 27657 C 7 7
264 Philippines 27658 A 7 7
265 Philippines 27659 G 7 7
266 Philippines 27660 A 7 7
267 Philippines 27661 C 7 7
268 Philippines 27662 A 7 7
269 Philippines 27663 A 7 7
270 Philippines 27664 G 7 7
271 Philippines 27665 A 7 7
272 Philippines 27666 G 7 7
273 Philippines 27667 G 7 7
274 Philippines 27668 A 7 7
275 Philippines 27669 A 7 7
276 Philippines 27670 G 7 7
277 Philippines 27671 T A 7 6 Val93Asp
278 Philippines 27672 T 7 7
279 Philippines 27673 C 7 7
280 Philippines 27674 A 7 7
281 Philippines 27675 A 7 7
282 Philippines 27676 G 7 7
283 Philippines 27677 A 7 7
284 Philippines 27678 A 7 7
285 Philippines 27679 C 7 7
286 Philippines 27680 T 7 7
287 Philippines 27681 T 7 7
288 Philippines 27682 T 7 7
289 Philippines 27683 A 7 7
290 Philippines 27684 C 7 7
291 Philippines 27685 T 7 7
292 Philippines 27686 C 7 7
293 Philippines 27687 T 7 7
294 Philippines 27688 C 7 7
295 Philippines 27689 C 7 7
296 Philippines 27690 A 7 7
297 Philippines 27691 A 7 7
298 Philippines 27692 T 7 7
299 Philippines 27693 T 7 7
300 Philippines 27694 T 7 7
301 Philippines 27695 T 7 7
302 Philippines 27696 T 7 7
303 Philippines 27697 C 7 7
304 Philippines 27698 T 7 7
305 Philippines 27699 T 7 7
306 Philippines 27700 A 7 7
307 Philippines 27701 T 7 7
308 Philippines 27702 T 7 7
309 Philippines 27703 G 7 7
310 Philippines 27704 T 7 7
311 Philippines 27705 T 7 7
312 Philippines 27706 G 7 7
313 Philippines 27707 C 7 7
314 Philippines 27708 G 7 7
315 Philippines 27709 G 7 7
316 Philippines 27710 C 7 7
317 Philippines 27711 A 7 7
318 Philippines 27712 A 7 7
319 Philippines 27713 T 7 7
320 Philippines 27714 A 7 7
321 Philippines 27715 G 7 7
322 Philippines 27716 T 7 7
323 Philippines 27717 G 7 7
324 Philippines 27718 T 7 7
325 Philippines 27719 T 7 7
326 Philippines 27720 T 7 7
327 Philippines 27721 A 7 7
328 Philippines 27722 T 7 7
329 Philippines 27723 A 7 7
330 Philippines 27724 A 7 7
331 Philippines 27725 C 7 7
332 Philippines 27726 A 7 7
333 Philippines 27727 C 7 7
334 Philippines 27728 T 7 7
335 Philippines 27729 T 7 7
336 Philippines 27730 T 7 7
337 Philippines 27731 G 7 7
338 Philippines 27732 C 7 7
339 Philippines 27733 T 7 7
340 Philippines 27734 T 7 7
341 Philippines 27735 C 7 7
342 Philippines 27736 A 7 7
343 Philippines 27737 C 7 7
344 Philippines 27738 A 7 7
345 Philippines 27739 C 7 7
346 Philippines 27740 T 7 7
347 Philippines 27741 C 7 7
348 Philippines 27742 A 7 7
349 Philippines 27743 A 7 7
350 Philippines 27744 A 7 7
351 Philippines 27745 A 7 7
352 Philippines 27746 G 7 7
353 Philippines 27747 A 7 7
354 Philippines 27748 A 7 7
355 Philippines 27749 A 7 7
356 Philippines 27750 G 7 7
357 Philippines 27751 A 7 7
358 Philippines 27752 C 7 7
359 Philippines 27753 A 7 7
360 Philippines 27754 G 7 7
361 Philippines 27755 A 7 7
362 Philippines 27756 A 7 7
363 Philippines 27757 T 7 7
364 Philippines 27758 G 7 7
365 Philippines 27759 A 7 7