National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                 1 2  
C     18                                      
D     6           1                          
E     24     1                                
F     30                                      
G     12           1                       1  
H     9                                      
I     25                                 1    
K     21                                      
L     45                   3               1  
M     6                                      
N     6                                      
P     18                   2     1            
Q 1   15                                      
R     15                                      
S     21               1                      
T     30 1             1                 1    
V     24                   1               1  
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 27394 A 528 528
1 Peru 27395 T 528 528
2 Peru 27396 G 528 528
3 Peru 27397 A 528 528
4 Peru 27398 A 528 528
5 Peru 27399 A 528 528
6 Peru 27400 A 528 528
7 Peru 27401 T 528 528
8 Peru 27402 T 528 528
9 Peru 27403 A 528 528
10 Peru 27404 T 528 528
11 Peru 27405 T 528 528
12 Peru 27406 C 528 528
13 Peru 27407 T 528 528
14 Peru 27408 T 528 528
15 Peru 27409 T 528 528
16 Peru 27410 T 528 528
17 Peru 27411 C 528 528
18 Peru 27412 T G 528 525 Leu7Val
19 Peru 27413 T 528 528
20 Peru 27414 G A 528 525 Leu7Leu
21 Peru 27415 G A 528 526 Ala8Thr
22 Peru 27416 C T 528 526 Ala8Val
23 Peru 27417 A 528 528
24 Peru 27418 C 528 528
25 Peru 27419 T 528 528
26 Peru 27420 G 528 528
27 Peru 27421 A 528 528
28 Peru 27422 T 528 528
29 Peru 27423 A 528 528
30 Peru 27424 A 528 528
31 Peru 27425 C T 528 527 Thr11Ile
32 Peru 27426 A 528 528
33 Peru 27427 C 528 528
34 Peru 27428 T 528 528
35 Peru 27429 C 528 528
36 Peru 27430 G 528 528
37 Peru 27431 C 528 528
38 Peru 27432 T 528 528
39 Peru 27433 A 528 528
40 Peru 27434 C 528 528
41 Peru 27435 T G 528 527 Thr14Thr
42 Peru 27436 T 528 528
43 Peru 27437 G 528 528
44 Peru 27438 T 528 528
45 Peru 27439 G 528 528
46 Peru 27440 A 528 528
47 Peru 27441 G 528 528
48 Peru 27442 C 528 528
49 Peru 27443 T 528 528
50 Peru 27444 T 528 528
51 Peru 27445 T 528 528
52 Peru 27446 A 528 528
53 Peru 27447 T 528 528
54 Peru 27448 C 528 528
55 Peru 27449 A 528 528
56 Peru 27450 C 528 528
57 Peru 27451 T 528 528
58 Peru 27452 A 528 528
59 Peru 27453 C 528 528
60 Peru 27454 C 528 528
61 Peru 27455 A 528 528
62 Peru 27456 A 528 528
63 Peru 27457 G 528 528
64 Peru 27458 A 528 528
65 Peru 27459 G T 528 525 Glu22Asp
66 Peru 27460 T 528 528
67 Peru 27461 G 528 528
68 Peru 27462 T 528 528
69 Peru 27463 G 528 528
70 Peru 27464 T 528 528
71 Peru 27465 T A 528 527 Val24Val
72 Peru 27466 A 528 528
73 Peru 27467 G 528 528
74 Peru 27468 A 528 528
75 Peru 27469 G 528 528
76 Peru 27470 G 528 528
77 Peru 27471 T C 528 526 Gly26Gly
78 Peru 27472 A 528 528
79 Peru 27473 C 528 528
80 Peru 27474 A 528 528
81 Peru 27475 A 528 528
82 Peru 27476 C 528 528
83 Peru 27477 A 528 528
84 Peru 27478 G T 528 503 Val29Leu
85 Peru 27479 T 528 528
86 Peru 27480 A 528 528
87 Peru 27481 C 528 528
88 Peru 27482 T 528 528
89 Peru 27483 T 528 528
90 Peru 27484 T 528 528
91 Peru 27485 T 528 528
92 Peru 27486 A 528 528
93 Peru 27487 A 528 528
94 Peru 27488 A 528 528
95 Peru 27489 A 528 528
96 Peru 27490 G 528 528
97 Peru 27491 A 528 528
98 Peru 27492 A 528 528
99 Peru 27493 C 528 528
100 Peru 27494 C 528 528
101 Peru 27495 T C 528 527 Pro34Pro
102 Peru 27496 T 528 528
103 Peru 27497 G 528 528
104 Peru 27498 C 528 528
105 Peru 27499 T 528 528
106 Peru 27500 C 528 528
107 Peru 27501 T 528 528
108 Peru 27502 T 528 528
109 Peru 27503 C 528 528
110 Peru 27504 T 528 528
111 Peru 27505 G 528 528
112 Peru 27506 G T 528 527 Gly38Val
113 Peru 27507 A 528 528
114 Peru 27508 A 528 528
115 Peru 27509 C 528 528
116 Peru 27510 A 528 528
117 Peru 27511 T 528 528
118 Peru 27512 A 528 528
119 Peru 27513 C T 528 525 Tyr40Tyr
120 Peru 27514 G 528 528
121 Peru 27515 A 528 528
122 Peru 27516 G 528 528
123 Peru 27517 G 528 528
124 Peru 27518 G 528 528
125 Peru 27519 C 528 528
126 Peru 27520 A 528 528
127 Peru 27521 A 528 528
128 Peru 27522 T 528 528
129 Peru 27523 T 528 528
130 Peru 27524 C 528 528
131 Peru 27525 A 528 528
132 Peru 27526 C 528 528
133 Peru 27527 C T 528 527 Pro45Leu
134 Peru 27528 A 528 528
135 Peru 27529 T 528 528
136 Peru 27530 T 528 528
137 Peru 27531 T 528 528
138 Peru 27532 C 528 528
139 Peru 27533 A 528 528
140 Peru 27534 T 528 528
141 Peru 27535 C 528 528
142 Peru 27536 C 528 528
143 Peru 27537 T 528 528
144 Peru 27538 C 528 528
145 Peru 27539 T 528 528
146 Peru 27540 A 528 528
147 Peru 27541 G 528 528
148 Peru 27542 C 528 528
149 Peru 27543 T 528 528
150 Peru 27544 G 528 528
151 Peru 27545 A G 528 527 Asp51Gly
152 Peru 27546 T 528 528
153 Peru 27547 A 528 528
154 Peru 27548 A 528 527
155 Peru 27549 C 526 525
156 Peru 27550 A 526 525
157 Peru 27551 A 526 525
158 Peru 27552 A 526 525
159 Peru 27553 T 526 525
160 Peru 27554 T 526 525
161 Peru 27555 T 525 525
162 Peru 27556 G 525 525
163 Peru 27557 C 525 525
164 Peru 27558 A 525 525
165 Peru 27559 C 525 525
166 Peru 27560 T 525 525
167 Peru 27561 G T 525 523 Leu56Leu
168 Peru 27562 A G 525 524 Thr57Ala
169 Peru 27563 C 525 525
170 Peru 27564 T 525 525
171 Peru 27565 T 525 525
172 Peru 27566 G 525 525
173 Peru 27567 C 525 525
174 Peru 27568 T 525 525
175 Peru 27569 T 525 525
176 Peru 27570 T 525 525
177 Peru 27571 A 525 525
178 Peru 27572 G T 525 522 Ser60Ile
179 Peru 27573 C 525 525
180 Peru 27574 A 525 525
181 Peru 27575 C 525 525
182 Peru 27576 T 525 525
183 Peru 27577 C T 525 523 Gln62*
184 Peru 27578 A 525 525
185 Peru 27579 A 525 525
186 Peru 27580 T 525 525
187 Peru 27581 T 525 525
188 Peru 27582 T 525 525
189 Peru 27583 G 525 525
190 Peru 27584 C 525 525
191 Peru 27585 T 525 525
192 Peru 27586 T 525 525
193 Peru 27587 T 525 525
194 Peru 27588 T 525 525
195 Peru 27589 G 525 525
196 Peru 27590 C 525 525
197 Peru 27591 T 525 525
198 Peru 27592 T 525 525
199 Peru 27593 G 525 525
200 Peru 27594 T 525 525
201 Peru 27595 C 525 525
202 Peru 27596 C 525 525
203 Peru 27597 T 525 525
204 Peru 27598 G 525 525
205 Peru 27599 A 525 525
206 Peru 27600 C 525 525
207 Peru 27601 G 525 525
208 Peru 27602 G 525 525
209 Peru 27603 C 525 525
210 Peru 27604 G 525 525
211 Peru 27605 T 525 525
212 Peru 27606 A 525 525
213 Peru 27607 A 525 525
214 Peru 27608 A 525 525
215 Peru 27609 A 525 525
216 Peru 27610 C 525 525
217 Peru 27611 A 525 525
218 Peru 27612 C 525 525
219 Peru 27613 G 525 525
220 Peru 27614 T 525 525
221 Peru 27615 C 525 525
222 Peru 27616 T 525 525
223 Peru 27617 A 525 525
224 Peru 27618 T 525 525
225 Peru 27619 C 525 525
226 Peru 27620 A 525 525
227 Peru 27621 G 525 525
228 Peru 27622 T 525 525
229 Peru 27623 T 525 525
230 Peru 27624 A 525 525
231 Peru 27625 C 525 525
232 Peru 27626 G 525 525
233 Peru 27627 T 525 525
234 Peru 27628 G 525 525
235 Peru 27629 C 525 525
236 Peru 27630 C 525 525
237 Peru 27631 A 525 525
238 Peru 27632 G 525 525
239 Peru 27633 A 525 525
240 Peru 27634 T 525 525
241 Peru 27635 C 525 525
242 Peru 27636 A 525 525
243 Peru 27637 G 525 525
244 Peru 27638 T 525 525
245 Peru 27639 T 525 525
246 Peru 27640 T 525 524
247 Peru 27641 C 525 524
248 Peru 27642 A 525 525
249 Peru 27643 C 525 525
250 Peru 27644 C 525 525
251 Peru 27645 T 525 525
252 Peru 27646 A 525 525
253 Peru 27647 A 525 525
254 Peru 27648 A 525 525
255 Peru 27649 C 525 525
256 Peru 27650 T 525 525
257 Peru 27651 G 525 525
258 Peru 27652 T 525 525
259 Peru 27653 T 525 525
260 Peru 27654 C 525 525
261 Peru 27655 A 525 525
262 Peru 27656 T C 525 524 Ile88Thr
263 Peru 27657 C 525 525
264 Peru 27658 A 525 525
265 Peru 27659 G 525 525
266 Peru 27660 A 525 525
267 Peru 27661 C 525 525
268 Peru 27662 A 525 525
269 Peru 27663 A 525 525
270 Peru 27664 G 525 525
271 Peru 27665 A 525 525
272 Peru 27666 G 525 525
273 Peru 27667 G 525 525
274 Peru 27668 A 525 525
275 Peru 27669 A 525 525
276 Peru 27670 G 525 525
277 Peru 27671 T 525 525
278 Peru 27672 T 525 525
279 Peru 27673 C 525 525
280 Peru 27674 A 525 525
281 Peru 27675 A 525 525
282 Peru 27676 G 525 524
283 Peru 27677 A 525 524
284 Peru 27678 A 525 524
285 Peru 27679 C 525 524
286 Peru 27680 T 525 524
287 Peru 27681 T 525 524
288 Peru 27682 T 525 524
289 Peru 27683 A 525 524
290 Peru 27684 C 525 524
291 Peru 27685 T 525 524
292 Peru 27686 C 525 524
293 Peru 27687 T 525 524
294 Peru 27688 C 525 524
295 Peru 27689 C T 525 522 Pro99Leu
296 Peru 27690 A 525 524
297 Peru 27691 A 525 524
298 Peru 27692 T 525 524
299 Peru 27693 T 525 524
300 Peru 27694 T 525 524
301 Peru 27695 T 525 525
302 Peru 27696 T 525 525
303 Peru 27697 C 525 525
304 Peru 27698 T 525 525
305 Peru 27699 T 525 525
306 Peru 27700 A 525 525
307 Peru 27701 T 525 525
308 Peru 27702 T 525 525
309 Peru 27703 G 525 525
310 Peru 27704 T 525 525
311 Peru 27705 T 525 525
312 Peru 27706 G 525 525
313 Peru 27707 C T 525 521 Ala105Val
314 Peru 27708 G 525 525
315 Peru 27709 G 525 525
316 Peru 27710 C 525 525
317 Peru 27711 A 525 525
318 Peru 27712 A 525 525
319 Peru 27713 T 525 525
320 Peru 27714 A 525 525
321 Peru 27715 G 525 525
322 Peru 27716 T 525 525
323 Peru 27717 G 525 525
324 Peru 27718 T 525 525
325 Peru 27719 T 525 525
326 Peru 27720 T 525 525
327 Peru 27721 A 525 525
328 Peru 27722 T 525 525
329 Peru 27723 A 525 525
330 Peru 27724 A 525 525
331 Peru 27725 C 525 525
332 Peru 27726 A 525 525
333 Peru 27727 C 525 525
334 Peru 27728 T 525 525
335 Peru 27729 T 525 525
336 Peru 27730 T 525 525
337 Peru 27731 G 525 525
338 Peru 27732 C 525 525
339 Peru 27733 T 525 525
340 Peru 27734 T 525 525
341 Peru 27735 C 525 525
342 Peru 27736 A 525 525
343 Peru 27737 C 525 525
344 Peru 27738 A 525 525
345 Peru 27739 C 525 525
346 Peru 27740 T 525 525
347 Peru 27741 C T 525 524 Leu116Leu
348 Peru 27742 A 525 525
349 Peru 27743 A 525 525
350 Peru 27744 A 525 525
351 Peru 27745 A 525 525
352 Peru 27746 G 525 525
353 Peru 27747 A 525 525
354 Peru 27748 A 525 525
355 Peru 27749 A 525 525
356 Peru 27750 G 525 525
357 Peru 27751 A 525 525
358 Peru 27752 C 525 525
359 Peru 27753 A 525 525
360 Peru 27754 G 525 525
361 Peru 27755 A 525 525
362 Peru 27756 A 524 524
363 Peru 27757 T 524 524
364 Peru 27758 G 524 524
365 Peru 27759 A 523 523