National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                   1                  
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 27394 A 57 57
1 Pakistan 27395 T 57 57
2 Pakistan 27396 G 57 57
3 Pakistan 27397 A 57 57
4 Pakistan 27398 A 57 57
5 Pakistan 27399 A 57 57
6 Pakistan 27400 A 57 57
7 Pakistan 27401 T 57 57
8 Pakistan 27402 T 57 57
9 Pakistan 27403 A 57 57
10 Pakistan 27404 T 57 57
11 Pakistan 27405 T 57 57
12 Pakistan 27406 C 57 57
13 Pakistan 27407 T 57 57
14 Pakistan 27408 T 57 57
15 Pakistan 27409 T 57 57
16 Pakistan 27410 T 57 57
17 Pakistan 27411 C 57 57
18 Pakistan 27412 T 57 57
19 Pakistan 27413 T 57 57
20 Pakistan 27414 G 57 57
21 Pakistan 27415 G 57 57
22 Pakistan 27416 C 57 57
23 Pakistan 27417 A 57 57
24 Pakistan 27418 C 57 57
25 Pakistan 27419 T 57 57
26 Pakistan 27420 G 57 57
27 Pakistan 27421 A 57 57
28 Pakistan 27422 T 57 57
29 Pakistan 27423 A 57 57
30 Pakistan 27424 A 57 57
31 Pakistan 27425 C 57 57
32 Pakistan 27426 A 57 57
33 Pakistan 27427 C 57 57
34 Pakistan 27428 T 57 57
35 Pakistan 27429 C 57 57
36 Pakistan 27430 G 57 57
37 Pakistan 27431 C 57 57
38 Pakistan 27432 T 57 57
39 Pakistan 27433 A 57 57
40 Pakistan 27434 C 57 57
41 Pakistan 27435 T 57 57
42 Pakistan 27436 T 57 57
43 Pakistan 27437 G 57 57
44 Pakistan 27438 T 57 57
45 Pakistan 27439 G 57 57
46 Pakistan 27440 A 57 57
47 Pakistan 27441 G 57 57
48 Pakistan 27442 C 57 57
49 Pakistan 27443 T 57 57
50 Pakistan 27444 T 57 57
51 Pakistan 27445 T 57 57
52 Pakistan 27446 A 57 57
53 Pakistan 27447 T 57 57
54 Pakistan 27448 C 57 57
55 Pakistan 27449 A 57 57
56 Pakistan 27450 C 57 57
57 Pakistan 27451 T 57 57
58 Pakistan 27452 A 57 57
59 Pakistan 27453 C 57 57
60 Pakistan 27454 C 57 57
61 Pakistan 27455 A 57 57
62 Pakistan 27456 A 57 57
63 Pakistan 27457 G 57 57
64 Pakistan 27458 A 57 57
65 Pakistan 27459 G 57 57
66 Pakistan 27460 T 57 57
67 Pakistan 27461 G 57 57
68 Pakistan 27462 T 57 57
69 Pakistan 27463 G 57 57
70 Pakistan 27464 T 57 57
71 Pakistan 27465 T 57 57
72 Pakistan 27466 A 57 57
73 Pakistan 27467 G 57 57
74 Pakistan 27468 A 57 57
75 Pakistan 27469 G 57 57
76 Pakistan 27470 G 57 57
77 Pakistan 27471 T 57 57
78 Pakistan 27472 A 57 57
79 Pakistan 27473 C 57 57
80 Pakistan 27474 A 57 57
81 Pakistan 27475 A 57 57
82 Pakistan 27476 C 57 57
83 Pakistan 27477 A 57 57
84 Pakistan 27478 G 57 57
85 Pakistan 27479 T 57 57
86 Pakistan 27480 A 57 57
87 Pakistan 27481 C 57 57
88 Pakistan 27482 T 57 57
89 Pakistan 27483 T 57 57
90 Pakistan 27484 T 57 57
91 Pakistan 27485 T 57 57
92 Pakistan 27486 A 57 57
93 Pakistan 27487 A 57 57
94 Pakistan 27488 A 57 57
95 Pakistan 27489 A 57 57
96 Pakistan 27490 G 57 57
97 Pakistan 27491 A 57 57
98 Pakistan 27492 A 57 57
99 Pakistan 27493 C 57 57
100 Pakistan 27494 C 57 57
101 Pakistan 27495 T 57 57
102 Pakistan 27496 T 57 57
103 Pakistan 27497 G 57 57
104 Pakistan 27498 C 57 57
105 Pakistan 27499 T 57 57
106 Pakistan 27500 C 57 57
107 Pakistan 27501 T 57 57
108 Pakistan 27502 T 57 57
109 Pakistan 27503 C 57 57
110 Pakistan 27504 T 57 57
111 Pakistan 27505 G 57 57
112 Pakistan 27506 G 57 57
113 Pakistan 27507 A 57 57
114 Pakistan 27508 A 57 57
115 Pakistan 27509 C 57 57
116 Pakistan 27510 A 57 57
117 Pakistan 27511 T 57 57
118 Pakistan 27512 A 57 57
119 Pakistan 27513 C 57 57
120 Pakistan 27514 G 57 57
121 Pakistan 27515 A 57 57
122 Pakistan 27516 G 57 57
123 Pakistan 27517 G 57 57
124 Pakistan 27518 G 57 57
125 Pakistan 27519 C 57 57
126 Pakistan 27520 A 57 57
127 Pakistan 27521 A 57 57
128 Pakistan 27522 T 57 57
129 Pakistan 27523 T 57 57
130 Pakistan 27524 C 57 57
131 Pakistan 27525 A 57 57
132 Pakistan 27526 C 57 57
133 Pakistan 27527 C 57 57
134 Pakistan 27528 A 57 57
135 Pakistan 27529 T 57 57
136 Pakistan 27530 T 57 57
137 Pakistan 27531 T 57 57
138 Pakistan 27532 C 57 57
139 Pakistan 27533 A 57 57
140 Pakistan 27534 T 57 57
141 Pakistan 27535 C 57 57
142 Pakistan 27536 C 57 57
143 Pakistan 27537 T 57 57
144 Pakistan 27538 C 57 57
145 Pakistan 27539 T 57 57
146 Pakistan 27540 A 57 57
147 Pakistan 27541 G 57 57
148 Pakistan 27542 C 57 57
149 Pakistan 27543 T 57 57
150 Pakistan 27544 G 57 57
151 Pakistan 27545 A 57 57
152 Pakistan 27546 T 57 57
153 Pakistan 27547 A 57 57
154 Pakistan 27548 A 57 57
155 Pakistan 27549 C 57 57
156 Pakistan 27550 A 57 57
157 Pakistan 27551 A 57 57
158 Pakistan 27552 A 57 57
159 Pakistan 27553 T 57 57
160 Pakistan 27554 T 57 57
161 Pakistan 27555 T 57 57
162 Pakistan 27556 G 57 57
163 Pakistan 27557 C 57 57
164 Pakistan 27558 A 57 57
165 Pakistan 27559 C 57 57
166 Pakistan 27560 T 57 57
167 Pakistan 27561 G T 57 56 Leu56Leu
168 Pakistan 27562 A 57 57
169 Pakistan 27563 C 57 57
170 Pakistan 27564 T 57 57
171 Pakistan 27565 T 57 57
172 Pakistan 27566 G 57 57
173 Pakistan 27567 C 57 57
174 Pakistan 27568 T 57 57
175 Pakistan 27569 T 57 57
176 Pakistan 27570 T 57 57
177 Pakistan 27571 A 57 57
178 Pakistan 27572 G 57 57
179 Pakistan 27573 C 57 57
180 Pakistan 27574 A 57 57
181 Pakistan 27575 C 57 57
182 Pakistan 27576 T 57 57
183 Pakistan 27577 C 57 57
184 Pakistan 27578 A 57 57
185 Pakistan 27579 A 57 57
186 Pakistan 27580 T 57 57
187 Pakistan 27581 T 57 57
188 Pakistan 27582 T 57 57
189 Pakistan 27583 G 57 57
190 Pakistan 27584 C 57 57
191 Pakistan 27585 T 57 57
192 Pakistan 27586 T 57 57
193 Pakistan 27587 T 57 57
194 Pakistan 27588 T 57 57
195 Pakistan 27589 G 57 57
196 Pakistan 27590 C 57 57
197 Pakistan 27591 T 57 57
198 Pakistan 27592 T 57 57
199 Pakistan 27593 G 57 57
200 Pakistan 27594 T 57 57
201 Pakistan 27595 C 57 57
202 Pakistan 27596 C 57 57
203 Pakistan 27597 T 57 57
204 Pakistan 27598 G 57 57
205 Pakistan 27599 A 57 57
206 Pakistan 27600 C 57 57
207 Pakistan 27601 G 57 57
208 Pakistan 27602 G 57 57
209 Pakistan 27603 C 57 57
210 Pakistan 27604 G 57 57
211 Pakistan 27605 T 57 57
212 Pakistan 27606 A 57 57
213 Pakistan 27607 A 57 57
214 Pakistan 27608 A 57 57
215 Pakistan 27609 A 57 57
216 Pakistan 27610 C 57 56
217 Pakistan 27611 A 57 56
218 Pakistan 27612 C 57 56
219 Pakistan 27613 G 57 56
220 Pakistan 27614 T 57 56
221 Pakistan 27615 C 57 57
222 Pakistan 27616 T 57 57
223 Pakistan 27617 A 57 57
224 Pakistan 27618 T 57 57
225 Pakistan 27619 C 57 57
226 Pakistan 27620 A 57 57
227 Pakistan 27621 G 57 57
228 Pakistan 27622 T 57 57
229 Pakistan 27623 T 57 57
230 Pakistan 27624 A 57 57
231 Pakistan 27625 C 57 57
232 Pakistan 27626 G 57 57
233 Pakistan 27627 T 57 57
234 Pakistan 27628 G 57 57
235 Pakistan 27629 C 57 57
236 Pakistan 27630 C 57 57
237 Pakistan 27631 A 57 57
238 Pakistan 27632 G 57 57
239 Pakistan 27633 A 57 57
240 Pakistan 27634 T 57 57
241 Pakistan 27635 C 57 57
242 Pakistan 27636 A 57 57
243 Pakistan 27637 G 57 57
244 Pakistan 27638 T 57 57
245 Pakistan 27639 T 57 57
246 Pakistan 27640 T 57 57
247 Pakistan 27641 C 57 57
248 Pakistan 27642 A 57 57
249 Pakistan 27643 C 57 57
250 Pakistan 27644 C 57 57
251 Pakistan 27645 T 57 57
252 Pakistan 27646 A 57 57
253 Pakistan 27647 A 57 57
254 Pakistan 27648 A 57 57
255 Pakistan 27649 C 57 57
256 Pakistan 27650 T 57 57
257 Pakistan 27651 G 57 57
258 Pakistan 27652 T 57 57
259 Pakistan 27653 T 57 57
260 Pakistan 27654 C 57 57
261 Pakistan 27655 A 57 57
262 Pakistan 27656 T 57 57
263 Pakistan 27657 C 57 57
264 Pakistan 27658 A 57 57
265 Pakistan 27659 G 57 57
266 Pakistan 27660 A 57 57
267 Pakistan 27661 C 57 57
268 Pakistan 27662 A 57 57
269 Pakistan 27663 A 57 57
270 Pakistan 27664 G 57 57
271 Pakistan 27665 A 57 57
272 Pakistan 27666 G 57 57
273 Pakistan 27667 G 57 57
274 Pakistan 27668 A 57 57
275 Pakistan 27669 A 57 57
276 Pakistan 27670 G 57 57
277 Pakistan 27671 T 57 57
278 Pakistan 27672 T 57 57
279 Pakistan 27673 C 57 57
280 Pakistan 27674 A 57 57
281 Pakistan 27675 A 57 57
282 Pakistan 27676 G 57 57
283 Pakistan 27677 A 57 57
284 Pakistan 27678 A 57 57
285 Pakistan 27679 C 57 57
286 Pakistan 27680 T 57 57
287 Pakistan 27681 T 57 57
288 Pakistan 27682 T 57 57
289 Pakistan 27683 A 57 57
290 Pakistan 27684 C 57 57
291 Pakistan 27685 T 57 57
292 Pakistan 27686 C 57 57
293 Pakistan 27687 T 57 56
294 Pakistan 27688 C 57 56
295 Pakistan 27689 C 57 56
296 Pakistan 27690 A 57 56
297 Pakistan 27691 A 57 56
298 Pakistan 27692 T 57 56
299 Pakistan 27693 T 57 56
300 Pakistan 27694 T 57 56
301 Pakistan 27695 T 57 56
302 Pakistan 27696 T 57 56
303 Pakistan 27697 C 57 56
304 Pakistan 27698 T 57 56
305 Pakistan 27699 T 57 56
306 Pakistan 27700 A 57 56
307 Pakistan 27701 T 57 56
308 Pakistan 27702 T 57 56
309 Pakistan 27703 G 57 56
310 Pakistan 27704 T 57 56
311 Pakistan 27705 T 57 56
312 Pakistan 27706 G 57 56
313 Pakistan 27707 C 57 56
314 Pakistan 27708 G 57 56
315 Pakistan 27709 G 57 56
316 Pakistan 27710 C 57 56
317 Pakistan 27711 A 57 56
318 Pakistan 27712 A 57 56
319 Pakistan 27713 T 57 57
320 Pakistan 27714 A 57 57
321 Pakistan 27715 G 57 57
322 Pakistan 27716 T 57 57
323 Pakistan 27717 G 57 57
324 Pakistan 27718 T 57 57
325 Pakistan 27719 T 57 57
326 Pakistan 27720 T 57 57
327 Pakistan 27721 A 57 57
328 Pakistan 27722 T 57 57
329 Pakistan 27723 A 57 57
330 Pakistan 27724 A 57 57
331 Pakistan 27725 C 57 57
332 Pakistan 27726 A 57 57
333 Pakistan 27727 C 57 57
334 Pakistan 27728 T 57 57
335 Pakistan 27729 T 57 57
336 Pakistan 27730 T 57 57
337 Pakistan 27731 G 57 57
338 Pakistan 27732 C 57 57
339 Pakistan 27733 T 57 57
340 Pakistan 27734 T 57 57
341 Pakistan 27735 C 57 57
342 Pakistan 27736 A 57 57
343 Pakistan 27737 C 57 57
344 Pakistan 27738 A 57 57
345 Pakistan 27739 C 57 57
346 Pakistan 27740 T 57 57
347 Pakistan 27741 C 57 57
348 Pakistan 27742 A 57 57
349 Pakistan 27743 A 57 57
350 Pakistan 27744 A 57 57
351 Pakistan 27745 A 57 57
352 Pakistan 27746 G 57 57
353 Pakistan 27747 A 57 57
354 Pakistan 27748 A 57 57
355 Pakistan 27749 A 57 57
356 Pakistan 27750 G 57 57
357 Pakistan 27751 A 57 57
358 Pakistan 27752 C 57 57
359 Pakistan 27753 A 57 57
360 Pakistan 27754 G 57 57
361 Pakistan 27755 A 57 57
362 Pakistan 27756 A 57 57
363 Pakistan 27757 T 57 57
364 Pakistan 27758 G 57 57
365 Pakistan 27759 A 57 57