National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                               2      
C     18                                      
D     6     1                                
E     24                 1         1          
F     30         1                            
G     12                                      
H     9                                      
I     25                                   1  
K     21                             1        
L     45         1         2                  
M     6                                      
N     6                                     1
P     18                   2         1        
Q 1   15                   1       1          
R     15               1                      
S     21                         1            
T     30               4                 1    
V     24         2                            
Y     15   1                                 3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 27394 A 1276 1276
1 Norway 27395 T 1276 1276
2 Norway 27396 G 1276 1276
3 Norway 27397 A 1276 1276
4 Norway 27398 A 1276 1276
5 Norway 27399 A 1276 1276
6 Norway 27400 A 1276 1276
7 Norway 27401 T 1276 1276
8 Norway 27402 T 1276 1276
9 Norway 27403 A 1276 1276
10 Norway 27404 T 1276 1276
11 Norway 27405 T 1276 1276
12 Norway 27406 C 1276 1276
13 Norway 27407 T 1276 1276
14 Norway 27408 T 1276 1276
15 Norway 27409 T 1276 1276
16 Norway 27410 T 1276 1276
17 Norway 27411 C 1276 1276
18 Norway 27412 T 1276 1276
19 Norway 27413 T 1276 1276
20 Norway 27414 G 1276 1276
21 Norway 27415 G 1276 1276
22 Norway 27416 C 1276 1276
23 Norway 27417 A 1276 1276
24 Norway 27418 C 1276 1276
25 Norway 27419 T 1276 1276
26 Norway 27420 G 1276 1276
27 Norway 27421 A 1276 1276
28 Norway 27422 T 1276 1276
29 Norway 27423 A 1276 1276
30 Norway 27424 A 1276 1276
31 Norway 27425 C 1276 1276
32 Norway 27426 A 1276 1276
33 Norway 27427 C 1276 1276
34 Norway 27428 T 1276 1276
35 Norway 27429 C A 1276 1272 Leu12Leu
36 Norway 27430 G 1276 1276
37 Norway 27431 C 1276 1276
38 Norway 27432 T 1276 1276
39 Norway 27433 A 1276 1276
40 Norway 27434 C T 1276 1179 Thr14Ile
41 Norway 27435 T 1276 1276
42 Norway 27436 T 1276 1276
43 Norway 27437 G 1276 1276
44 Norway 27438 T 1276 1276
45 Norway 27439 G 1276 1276
46 Norway 27440 A 1276 1276
47 Norway 27441 G 1276 1276
48 Norway 27442 C 1276 1276
49 Norway 27443 T 1276 1276
50 Norway 27444 T 1276 1276
51 Norway 27445 T 1276 1276
52 Norway 27446 A G 1276 1275 Tyr18Cys
53 Norway 27447 T C 1276 1275 Tyr18Tyr
54 Norway 27448 C 1276 1276
55 Norway 27449 A 1276 1276
56 Norway 27450 C 1276 1276
57 Norway 27451 T 1276 1276
58 Norway 27452 A 1276 1276
59 Norway 27453 C 1276 1276
60 Norway 27454 C 1276 1276
61 Norway 27455 A 1276 1276
62 Norway 27456 A G 1276 1275 Gln21Gln
63 Norway 27457 G 1276 1276
64 Norway 27458 A 1276 1275
65 Norway 27459 G 1276 1276
66 Norway 27460 T 1276 1276
67 Norway 27461 G 1276 1275
68 Norway 27462 T 1276 1276
69 Norway 27463 G 1276 1276
70 Norway 27464 T 1276 1276
71 Norway 27465 T 1276 1276
72 Norway 27466 A 1276 1276
73 Norway 27467 G 1276 1276
74 Norway 27468 A 1276 1275
75 Norway 27469 G 1276 1276
76 Norway 27470 G 1276 1275
77 Norway 27471 T 1276 1276
78 Norway 27472 A 1276 1276
79 Norway 27473 C 1276 1276
80 Norway 27474 A 1276 1276
81 Norway 27475 A 1276 1276
82 Norway 27476 C 1276 1276
83 Norway 27477 A 1276 1276
84 Norway 27478 G 1276 1276
85 Norway 27479 T 1276 1276
86 Norway 27480 A 1276 1276
87 Norway 27481 C 1276 1276
88 Norway 27482 T 1276 1276
89 Norway 27483 T 1276 1276
90 Norway 27484 T C 1276 1275 Leu31Leu
91 Norway 27485 T 1276 1276
92 Norway 27486 A 1276 1276
93 Norway 27487 A 1276 1276
94 Norway 27488 A 1276 1276
95 Norway 27489 A 1276 1276
96 Norway 27490 G 1276 1276
97 Norway 27491 A 1276 1276
98 Norway 27492 A 1276 1276
99 Norway 27493 C 1276 1276
100 Norway 27494 C 1276 1276
101 Norway 27495 T 1276 1276
102 Norway 27496 T 1276 1276
103 Norway 27497 G 1276 1276
104 Norway 27498 C 1276 1276
105 Norway 27499 T 1276 1276
106 Norway 27500 C 1276 1276
107 Norway 27501 T 1276 1276
108 Norway 27502 T 1276 1276
109 Norway 27503 C 1276 1276
110 Norway 27504 T 1276 1276
111 Norway 27505 G 1276 1276
112 Norway 27506 G 1276 1276
113 Norway 27507 A 1276 1276
114 Norway 27508 A 1276 1276
115 Norway 27509 C T 1276 1266 Thr39Ile
116 Norway 27510 A T 1276 1275 Thr39Thr
117 Norway 27511 T 1276 1276
118 Norway 27512 A 1224 1216
119 Norway 27513 C T 1224 1214 Tyr40Tyr
120 Norway 27514 G A 1223 1214 Glu41Lys
121 Norway 27515 A 1223 1213
122 Norway 27516 G 1223 1215
123 Norway 27517 G 1223 1212
124 Norway 27518 G 1223 1212
125 Norway 27519 C 1223 1214
126 Norway 27520 A T 1223 1214 Asn43Tyr
127 Norway 27521 A 1223 1215
128 Norway 27522 T 1223 1215
129 Norway 27523 T 1223 1214
130 Norway 27524 C 1223 1214
131 Norway 27525 A 1223 1215
132 Norway 27526 C 1223 1214
133 Norway 27527 C G 1223 1207 Pro45Arg
134 Norway 27528 A 1223 1215
135 Norway 27529 T 1223 1215
136 Norway 27530 T 1223 1214
137 Norway 27531 T C 1223 1213 Phe46Phe
138 Norway 27532 C 1223 1214
139 Norway 27533 A 1223 1214
140 Norway 27534 T 1218 1207
141 Norway 27535 C 1218 1206
142 Norway 27536 C 1218 1206
143 Norway 27537 T 1218 1206
144 Norway 27538 C 1218 1207
145 Norway 27539 T 1218 1206
146 Norway 27540 A 1218 1206
147 Norway 27541 G 1218 1206
148 Norway 27542 C 1218 1207
149 Norway 27543 T 1218 1205
150 Norway 27544 G 1218 1208
151 Norway 27545 A 1218 1208
152 Norway 27546 T 1218 1209
153 Norway 27547 A 1218 1208
154 Norway 27548 A 1218 1207
155 Norway 27549 C 1218 1209
156 Norway 27550 A 1218 1210
157 Norway 27551 A 1218 1208
158 Norway 27552 A 1218 1208
159 Norway 27553 T 1218 1209
160 Norway 27554 T 1218 1211
161 Norway 27555 T 1218 1218
162 Norway 27556 G T 1218 1217 Ala55Ser
163 Norway 27557 C 1218 1217
164 Norway 27558 A 1218 1217
165 Norway 27559 C 1218 1218
166 Norway 27560 T 1218 1218
167 Norway 27561 G 1218 1217
168 Norway 27562 A 1218 1218
169 Norway 27563 C 1218 1217
170 Norway 27564 T 1218 1218
171 Norway 27565 T 1218 1218
172 Norway 27566 G 1218 1218
173 Norway 27567 C 1218 1218
174 Norway 27568 T 1218 1218
175 Norway 27569 T 1218 1218
176 Norway 27570 T 1218 1218
177 Norway 27571 A 1218 1218
178 Norway 27572 G 1218 1218
179 Norway 27573 C 1219 1219
180 Norway 27574 A 1218 1218
181 Norway 27575 C 1218 1218
182 Norway 27576 T 1218 1218
183 Norway 27577 C T 1218 1216 Gln62*
184 Norway 27578 A 1218 1217
185 Norway 27579 A 1218 1218
186 Norway 27580 T 1218 1217
187 Norway 27581 T 1218 1218
188 Norway 27582 T 1218 1218
189 Norway 27583 G T 1218 1217 Ala64Ser
190 Norway 27584 C 1218 1217
191 Norway 27585 T 1218 1218
192 Norway 27586 T 1218 1217
193 Norway 27587 T 1218 1217
194 Norway 27588 T 1218 1218
195 Norway 27589 G 1218 1218
196 Norway 27590 C 1218 1217
197 Norway 27591 T 1218 1218
198 Norway 27592 T 1218 1218
199 Norway 27593 G 1218 1218
200 Norway 27594 T 1218 1217
201 Norway 27595 C 1218 1218
202 Norway 27596 C 1218 1218
203 Norway 27597 T 1218 1218
204 Norway 27598 G 1218 1217
205 Norway 27599 A 1218 1217
206 Norway 27600 C T 1218 1216 Asp69Asp
207 Norway 27601 G 1218 1218
208 Norway 27602 G 1218 1217
209 Norway 27603 C 1219 1219
210 Norway 27604 G 1219 1219
211 Norway 27605 T 1219 1219
212 Norway 27606 A 1219 1219
213 Norway 27607 A 1219 1219
214 Norway 27608 A G 1219 1218 Lys72Arg
215 Norway 27609 A 1219 1219
216 Norway 27610 C 1219 1219
217 Norway 27611 A 1219 1219
218 Norway 27612 C 1219 1219
219 Norway 27613 G 1219 1219
220 Norway 27614 T 1219 1219
221 Norway 27615 C 1219 1219
222 Norway 27616 T 1219 1219
223 Norway 27617 A 1219 1219
224 Norway 27618 T C 1219 1217 Tyr75Tyr
225 Norway 27619 C 1219 1219
226 Norway 27620 A 1219 1219
227 Norway 27621 G 1219 1219
228 Norway 27622 T 1219 1219
229 Norway 27623 T 1219 1219
230 Norway 27624 A 1219 1219
231 Norway 27625 C 1219 1219
232 Norway 27626 G 1219 1219
233 Norway 27627 T 1219 1219
234 Norway 27628 G 1219 1219
235 Norway 27629 C 1219 1219
236 Norway 27630 C 1219 1219
237 Norway 27631 A 1219 1219
238 Norway 27632 G T 1219 1176 Arg80Ile
239 Norway 27633 A 1219 1219
240 Norway 27634 T 1221 1221
241 Norway 27635 C 1221 1221
242 Norway 27636 A 1221 1221
243 Norway 27637 G 1221 1221
244 Norway 27638 T 1221 1221
245 Norway 27639 T 1221 1221
246 Norway 27640 T 1221 1221
247 Norway 27641 C 1221 1221
248 Norway 27642 A 1221 1221
249 Norway 27643 C 1221 1221
250 Norway 27644 C T 1221 1220 Pro84Leu
251 Norway 27645 T 1221 1221
252 Norway 27646 A 1221 1221
253 Norway 27647 A 1221 1221
254 Norway 27648 A 1221 1221
255 Norway 27649 C 1221 1221
256 Norway 27650 T 1221 1221
257 Norway 27651 G 1221 1221
258 Norway 27652 T 1221 1221
259 Norway 27653 T 1221 1221
260 Norway 27654 C 1221 1221
261 Norway 27655 A G 1221 1219 Ile88Val
262 Norway 27656 T 1221 1221
263 Norway 27657 C 1221 1221
264 Norway 27658 A 1221 1221
265 Norway 27659 G 1221 1221
266 Norway 27660 A 1221 1221
267 Norway 27661 C 1221 1221
268 Norway 27662 A 1221 1221
269 Norway 27663 A 1221 1221
270 Norway 27664 G 1221 1221
271 Norway 27665 A 1221 1221
272 Norway 27666 G 1221 1221
273 Norway 27667 G 1221 1221
274 Norway 27668 A 1221 1221
275 Norway 27669 A 1221 1221
276 Norway 27670 G T 1221 1220 Val93Phe
277 Norway 27671 T 1221 1221
278 Norway 27672 T 1221 1221
279 Norway 27673 C 1221 1221
280 Norway 27674 A T 1221 1206 Gln94Leu
281 Norway 27675 A 1221 1221
282 Norway 27676 G C 1221 1220 Glu95Gln
283 Norway 27677 A 1221 1221
284 Norway 27678 A 1221 1221
285 Norway 27679 C T 1221 1219 Leu96Phe
286 Norway 27680 T 1221 1221
287 Norway 27681 T 1221 1221
288 Norway 27682 T 1221 1221
289 Norway 27683 A 1221 1221
290 Norway 27684 C 1221 1220
291 Norway 27685 T C 1221 1219 Ser98Pro
292 Norway 27686 C 1221 1220
293 Norway 27687 T 1221 1221
294 Norway 27688 C 1221 1221
295 Norway 27689 C T 1221 1218 Pro99Leu
296 Norway 27690 A 1221 1221
297 Norway 27691 A 1221 1221
298 Norway 27692 T 1221 1221
299 Norway 27693 T 1221 1221
300 Norway 27694 T 1219 1219
301 Norway 27695 T 1219 1219
302 Norway 27696 T 1219 1219
303 Norway 27697 C 1219 1219
304 Norway 27698 T 1219 1219
305 Norway 27699 T 1219 1219
306 Norway 27700 A 1219 1219
307 Norway 27701 T 1219 1219
308 Norway 27702 T 1219 1219
309 Norway 27703 G T 1219 1216 Val104Phe
310 Norway 27704 T 1219 1219
311 Norway 27705 T 1219 1219
312 Norway 27706 G 1219 1219
313 Norway 27707 C 1219 1219
314 Norway 27708 G 1219 1219
315 Norway 27709 G 1219 1219
316 Norway 27710 C 1219 1219
317 Norway 27711 A 1219 1219
318 Norway 27712 A 1219 1219
319 Norway 27713 T 1219 1219
320 Norway 27714 A 1219 1219
321 Norway 27715 G 1219 1218
322 Norway 27716 T 1219 1219
323 Norway 27717 G 1219 1219
324 Norway 27718 T 1219 1219
325 Norway 27719 T 1219 1219
326 Norway 27720 T 1219 1219
327 Norway 27721 A 1219 1219
328 Norway 27722 T 1219 1219
329 Norway 27723 A 1219 1219
330 Norway 27724 A 1219 1219
331 Norway 27725 C 1219 1219
332 Norway 27726 A 1219 1218
333 Norway 27727 C 1219 1219
334 Norway 27728 T 1219 1219
335 Norway 27729 T 1219 1219
336 Norway 27730 T 1219 1219
337 Norway 27731 G 1219 1219
338 Norway 27732 C 1219 1218
339 Norway 27733 T 1219 1219
340 Norway 27734 T 1219 1219
341 Norway 27735 C 1219 1218
342 Norway 27736 A 1219 1219
343 Norway 27737 C T 1219 1217 Thr115Ile
344 Norway 27738 A 1219 1219
345 Norway 27739 C 1218 1218
346 Norway 27740 T 1218 1218
347 Norway 27741 C 1218 1217
348 Norway 27742 A 1218 1218
349 Norway 27743 A 1218 1218
350 Norway 27744 A 1218 1218
351 Norway 27745 A 1200 1200
352 Norway 27746 G 1200 1199
353 Norway 27747 A 1199 1199
354 Norway 27748 A 1197 1197
355 Norway 27749 A 1197 1197
356 Norway 27750 G 1197 1196
357 Norway 27751 A 1197 1197
358 Norway 27752 C T 1197 1196 Thr120Ile
359 Norway 27753 A 1196 1196
360 Norway 27754 G 1196 1196
361 Norway 27755 A 1196 1196
362 Norway 27756 A 1196 1196
363 Norway 27757 T 1196 1196
364 Norway 27758 G 1192 1192
365 Norway 27759 A 1192 1192