National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                       1              
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30               1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 27394 A 41 41
1 Myanmar 27395 T 41 41
2 Myanmar 27396 G 41 41
3 Myanmar 27397 A 41 41
4 Myanmar 27398 A 41 41
5 Myanmar 27399 A 41 41
6 Myanmar 27400 A 41 41
7 Myanmar 27401 T 41 41
8 Myanmar 27402 T 41 41
9 Myanmar 27403 A 41 41
10 Myanmar 27404 T 41 41
11 Myanmar 27405 T 41 41
12 Myanmar 27406 C 41 41
13 Myanmar 27407 T 41 41
14 Myanmar 27408 T 41 41
15 Myanmar 27409 T 41 41
16 Myanmar 27410 T 41 41
17 Myanmar 27411 C 41 41
18 Myanmar 27412 T 41 41
19 Myanmar 27413 T 41 41
20 Myanmar 27414 G 41 41
21 Myanmar 27415 G 41 41
22 Myanmar 27416 C 41 41
23 Myanmar 27417 A 41 41
24 Myanmar 27418 C 41 41
25 Myanmar 27419 T 41 41
26 Myanmar 27420 G 41 41
27 Myanmar 27421 A 41 41
28 Myanmar 27422 T 41 41
29 Myanmar 27423 A 41 41
30 Myanmar 27424 A 41 41
31 Myanmar 27425 C 41 41
32 Myanmar 27426 A 41 41
33 Myanmar 27427 C 41 41
34 Myanmar 27428 T 41 41
35 Myanmar 27429 C 41 41
36 Myanmar 27430 G 41 41
37 Myanmar 27431 C 41 41
38 Myanmar 27432 T 41 41
39 Myanmar 27433 A 41 41
40 Myanmar 27434 C 41 41
41 Myanmar 27435 T 41 41
42 Myanmar 27436 T 41 41
43 Myanmar 27437 G 41 41
44 Myanmar 27438 T 41 41
45 Myanmar 27439 G 41 41
46 Myanmar 27440 A 41 41
47 Myanmar 27441 G 41 41
48 Myanmar 27442 C 41 41
49 Myanmar 27443 T 41 41
50 Myanmar 27444 T 41 41
51 Myanmar 27445 T 41 41
52 Myanmar 27446 A 41 41
53 Myanmar 27447 T 41 41
54 Myanmar 27448 C 41 41
55 Myanmar 27449 A 41 41
56 Myanmar 27450 C 41 41
57 Myanmar 27451 T 41 41
58 Myanmar 27452 A 41 41
59 Myanmar 27453 C 41 41
60 Myanmar 27454 C 41 41
61 Myanmar 27455 A 41 41
62 Myanmar 27456 A 41 41
63 Myanmar 27457 G 41 41
64 Myanmar 27458 A 41 41
65 Myanmar 27459 G 41 41
66 Myanmar 27460 T 41 41
67 Myanmar 27461 G 41 41
68 Myanmar 27462 T 41 41
69 Myanmar 27463 G 41 41
70 Myanmar 27464 T 41 41
71 Myanmar 27465 T 41 41
72 Myanmar 27466 A 41 41
73 Myanmar 27467 G 41 41
74 Myanmar 27468 A 41 41
75 Myanmar 27469 G 41 41
76 Myanmar 27470 G 41 41
77 Myanmar 27471 T 41 41
78 Myanmar 27472 A 41 41
79 Myanmar 27473 C 41 41
80 Myanmar 27474 A 41 41
81 Myanmar 27475 A 41 41
82 Myanmar 27476 C 41 41
83 Myanmar 27477 A 41 41
84 Myanmar 27478 G 41 41
85 Myanmar 27479 T 41 41
86 Myanmar 27480 A 41 41
87 Myanmar 27481 C 41 41
88 Myanmar 27482 T 41 41
89 Myanmar 27483 T 41 41
90 Myanmar 27484 T 41 41
91 Myanmar 27485 T 41 41
92 Myanmar 27486 A 41 41
93 Myanmar 27487 A 41 41
94 Myanmar 27488 A 41 41
95 Myanmar 27489 A 41 41
96 Myanmar 27490 G 41 41
97 Myanmar 27491 A 41 41
98 Myanmar 27492 A 41 41
99 Myanmar 27493 C 41 41
100 Myanmar 27494 C 41 41
101 Myanmar 27495 T 41 41
102 Myanmar 27496 T 41 41
103 Myanmar 27497 G 41 41
104 Myanmar 27498 C 41 41
105 Myanmar 27499 T 41 41
106 Myanmar 27500 C 41 41
107 Myanmar 27501 T 41 41
108 Myanmar 27502 T 41 41
109 Myanmar 27503 C 41 41
110 Myanmar 27504 T 41 41
111 Myanmar 27505 G 41 41
112 Myanmar 27506 G 41 41
113 Myanmar 27507 A 41 41
114 Myanmar 27508 A 41 41
115 Myanmar 27509 C 41 41
116 Myanmar 27510 A 41 41
117 Myanmar 27511 T 41 41
118 Myanmar 27512 A 41 41
119 Myanmar 27513 C 41 41
120 Myanmar 27514 G 41 41
121 Myanmar 27515 A 41 41
122 Myanmar 27516 G 41 41
123 Myanmar 27517 G 41 41
124 Myanmar 27518 G 41 41
125 Myanmar 27519 C 41 41
126 Myanmar 27520 A 41 41
127 Myanmar 27521 A 41 41
128 Myanmar 27522 T 41 41
129 Myanmar 27523 T 41 41
130 Myanmar 27524 C 41 41
131 Myanmar 27525 A 41 41
132 Myanmar 27526 C 41 41
133 Myanmar 27527 C 41 41
134 Myanmar 27528 A 41 41
135 Myanmar 27529 T 41 41
136 Myanmar 27530 T 41 41
137 Myanmar 27531 T 41 41
138 Myanmar 27532 C 41 41
139 Myanmar 27533 A 41 41
140 Myanmar 27534 T 41 41
141 Myanmar 27535 C 41 41
142 Myanmar 27536 C 41 41
143 Myanmar 27537 T 41 41
144 Myanmar 27538 C 41 41
145 Myanmar 27539 T 41 41
146 Myanmar 27540 A 41 41
147 Myanmar 27541 G 41 41
148 Myanmar 27542 C 41 41
149 Myanmar 27543 T 41 41
150 Myanmar 27544 G 41 41
151 Myanmar 27545 A 41 41
152 Myanmar 27546 T 41 41
153 Myanmar 27547 A 41 41
154 Myanmar 27548 A 41 41
155 Myanmar 27549 C T 41 40 Asn52Asn
156 Myanmar 27550 A 41 41
157 Myanmar 27551 A 41 41
158 Myanmar 27552 A 41 41
159 Myanmar 27553 T 41 41
160 Myanmar 27554 T 41 41
161 Myanmar 27555 T 41 41
162 Myanmar 27556 G 41 41
163 Myanmar 27557 C 41 41
164 Myanmar 27558 A 41 41
165 Myanmar 27559 C 41 41
166 Myanmar 27560 T 41 41
167 Myanmar 27561 G 41 41
168 Myanmar 27562 A 41 41
169 Myanmar 27563 C 41 41
170 Myanmar 27564 T 41 41
171 Myanmar 27565 T 41 41
172 Myanmar 27566 G 41 41
173 Myanmar 27567 C 41 41
174 Myanmar 27568 T 41 41
175 Myanmar 27569 T 41 41
176 Myanmar 27570 T 41 41
177 Myanmar 27571 A 41 41
178 Myanmar 27572 G 41 41
179 Myanmar 27573 C 41 41
180 Myanmar 27574 A 41 41
181 Myanmar 27575 C 41 41
182 Myanmar 27576 T 41 41
183 Myanmar 27577 C 41 41
184 Myanmar 27578 A 41 41
185 Myanmar 27579 A 41 41
186 Myanmar 27580 T 41 41
187 Myanmar 27581 T 41 41
188 Myanmar 27582 T 41 41
189 Myanmar 27583 G 41 41
190 Myanmar 27584 C 41 41
191 Myanmar 27585 T 41 41
192 Myanmar 27586 T 41 41
193 Myanmar 27587 T 41 41
194 Myanmar 27588 T 41 41
195 Myanmar 27589 G 41 41
196 Myanmar 27590 C 41 41
197 Myanmar 27591 T 41 41
198 Myanmar 27592 T 41 41
199 Myanmar 27593 G 41 41
200 Myanmar 27594 T 41 41
201 Myanmar 27595 C 41 41
202 Myanmar 27596 C 41 41
203 Myanmar 27597 T 41 41
204 Myanmar 27598 G 41 41
205 Myanmar 27599 A 41 41
206 Myanmar 27600 C 41 41
207 Myanmar 27601 G 41 41
208 Myanmar 27602 G 41 41
209 Myanmar 27603 C 41 41
210 Myanmar 27604 G 41 41
211 Myanmar 27605 T 41 41
212 Myanmar 27606 A 41 41
213 Myanmar 27607 A 41 41
214 Myanmar 27608 A 41 41
215 Myanmar 27609 A 41 41
216 Myanmar 27610 C 41 41
217 Myanmar 27611 A 41 41
218 Myanmar 27612 C 41 41
219 Myanmar 27613 G 41 41
220 Myanmar 27614 T 41 41
221 Myanmar 27615 C 41 41
222 Myanmar 27616 T 41 41
223 Myanmar 27617 A 41 41
224 Myanmar 27618 T 41 41
225 Myanmar 27619 C 41 41
226 Myanmar 27620 A 41 41
227 Myanmar 27621 G 41 41
228 Myanmar 27622 T 41 41
229 Myanmar 27623 T 41 41
230 Myanmar 27624 A 41 41
231 Myanmar 27625 C 41 41
232 Myanmar 27626 G 41 41
233 Myanmar 27627 T 41 41
234 Myanmar 27628 G 41 41
235 Myanmar 27629 C 41 41
236 Myanmar 27630 C 41 41
237 Myanmar 27631 A 41 41
238 Myanmar 27632 G 41 41
239 Myanmar 27633 A 41 41
240 Myanmar 27634 T 41 41
241 Myanmar 27635 C 41 41
242 Myanmar 27636 A 41 41
243 Myanmar 27637 G 41 41
244 Myanmar 27638 T 41 41
245 Myanmar 27639 T 41 41
246 Myanmar 27640 T 41 41
247 Myanmar 27641 C 41 41
248 Myanmar 27642 A 41 41
249 Myanmar 27643 C 41 41
250 Myanmar 27644 C 41 41
251 Myanmar 27645 T 41 41
252 Myanmar 27646 A 41 41
253 Myanmar 27647 A 41 41
254 Myanmar 27648 A 41 41
255 Myanmar 27649 C 41 41
256 Myanmar 27650 T 41 41
257 Myanmar 27651 G 41 41
258 Myanmar 27652 T 41 41
259 Myanmar 27653 T 41 41
260 Myanmar 27654 C 41 41
261 Myanmar 27655 A 41 41
262 Myanmar 27656 T 41 41
263 Myanmar 27657 C 41 41
264 Myanmar 27658 A 41 41
265 Myanmar 27659 G 41 41
266 Myanmar 27660 A 41 41
267 Myanmar 27661 C 41 41
268 Myanmar 27662 A 41 41
269 Myanmar 27663 A 41 41
270 Myanmar 27664 G 41 41
271 Myanmar 27665 A 41 41
272 Myanmar 27666 G 41 41
273 Myanmar 27667 G 41 41
274 Myanmar 27668 A 41 41
275 Myanmar 27669 A 41 41
276 Myanmar 27670 G 41 41
277 Myanmar 27671 T 41 41
278 Myanmar 27672 T 41 41
279 Myanmar 27673 C 41 41
280 Myanmar 27674 A 41 41
281 Myanmar 27675 A 41 41
282 Myanmar 27676 G 41 41
283 Myanmar 27677 A 41 41
284 Myanmar 27678 A 41 41
285 Myanmar 27679 C 41 41
286 Myanmar 27680 T 41 41
287 Myanmar 27681 T 41 41
288 Myanmar 27682 T 41 41
289 Myanmar 27683 A 41 41
290 Myanmar 27684 C 41 41
291 Myanmar 27685 T 41 41
292 Myanmar 27686 C 41 41
293 Myanmar 27687 T 41 41
294 Myanmar 27688 C 41 41
295 Myanmar 27689 C 41 41
296 Myanmar 27690 A 41 41
297 Myanmar 27691 A 41 41
298 Myanmar 27692 T 41 41
299 Myanmar 27693 T 41 41
300 Myanmar 27694 T 41 41
301 Myanmar 27695 T 41 41
302 Myanmar 27696 T 41 41
303 Myanmar 27697 C 41 41
304 Myanmar 27698 T 41 41
305 Myanmar 27699 T 41 41
306 Myanmar 27700 A 41 41
307 Myanmar 27701 T 41 41
308 Myanmar 27702 T 41 41
309 Myanmar 27703 G 41 41
310 Myanmar 27704 T 41 41
311 Myanmar 27705 T 41 41
312 Myanmar 27706 G 41 41
313 Myanmar 27707 C 41 41
314 Myanmar 27708 G 41 41
315 Myanmar 27709 G 41 41
316 Myanmar 27710 C 41 41
317 Myanmar 27711 A 41 41
318 Myanmar 27712 A 41 41
319 Myanmar 27713 T 41 41
320 Myanmar 27714 A 41 41
321 Myanmar 27715 G 41 41
322 Myanmar 27716 T 41 41
323 Myanmar 27717 G 41 41
324 Myanmar 27718 T 41 41
325 Myanmar 27719 T 41 41
326 Myanmar 27720 T 41 41
327 Myanmar 27721 A 41 41
328 Myanmar 27722 T 41 41
329 Myanmar 27723 A 41 41
330 Myanmar 27724 A 41 41
331 Myanmar 27725 C 41 41
332 Myanmar 27726 A 41 41
333 Myanmar 27727 C 41 41
334 Myanmar 27728 T 41 41
335 Myanmar 27729 T 41 41
336 Myanmar 27730 T 41 41
337 Myanmar 27731 G 41 41
338 Myanmar 27732 C 41 41
339 Myanmar 27733 T 41 41
340 Myanmar 27734 T 41 41
341 Myanmar 27735 C 41 41
342 Myanmar 27736 A 41 41
343 Myanmar 27737 C 41 41
344 Myanmar 27738 A 41 41
345 Myanmar 27739 C 41 41
346 Myanmar 27740 T 41 41
347 Myanmar 27741 C 41 41
348 Myanmar 27742 A 41 41
349 Myanmar 27743 A 41 41
350 Myanmar 27744 A 41 41
351 Myanmar 27745 A 41 41
352 Myanmar 27746 G 41 41
353 Myanmar 27747 A 41 41
354 Myanmar 27748 A 41 41
355 Myanmar 27749 A 41 41
356 Myanmar 27750 G 41 41
357 Myanmar 27751 A 41 41
358 Myanmar 27752 C T 41 40 Thr120Ile
359 Myanmar 27753 A 41 41
360 Myanmar 27754 G 41 41
361 Myanmar 27755 A 41 41
362 Myanmar 27756 A 41 41
363 Myanmar 27757 T 41 41
364 Myanmar 27758 G 41 41
365 Myanmar 27759 A 41 41