National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                               1      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12           1                          
H     9                                      
I     25                                 1    
K     21                                      
L     45         1         2           1      
M     6                                      
N     6                                      
P     18                   1                  
Q     15                 1                    
R     15                                      
S     21                                      
T     30               1                      
V     24                                      
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Mozambique 27394 A 94 94
1 Mozambique 27395 T 94 94
2 Mozambique 27396 G 94 94
3 Mozambique 27397 A 94 94
4 Mozambique 27398 A 94 94
5 Mozambique 27399 A 94 94
6 Mozambique 27400 A 94 94
7 Mozambique 27401 T 94 94
8 Mozambique 27402 T 94 94
9 Mozambique 27403 A 94 94
10 Mozambique 27404 T 94 94
11 Mozambique 27405 T 94 94
12 Mozambique 27406 C 94 94
13 Mozambique 27407 T 94 94
14 Mozambique 27408 T 94 94
15 Mozambique 27409 T 94 94
16 Mozambique 27410 T 94 94
17 Mozambique 27411 C 94 94
18 Mozambique 27412 T 94 94
19 Mozambique 27413 T C 94 93 Leu7Ser
20 Mozambique 27414 G 94 94
21 Mozambique 27415 G 94 94
22 Mozambique 27416 C 94 94
23 Mozambique 27417 A 94 94
24 Mozambique 27418 C 94 94
25 Mozambique 27419 T 94 94
26 Mozambique 27420 G 94 94
27 Mozambique 27421 A 94 94
28 Mozambique 27422 T C 94 93 Ile10Thr
29 Mozambique 27423 A 94 94
30 Mozambique 27424 A 94 94
31 Mozambique 27425 C T 94 93 Thr11Ile
32 Mozambique 27426 A 94 94
33 Mozambique 27427 C 94 94
34 Mozambique 27428 T 94 94
35 Mozambique 27429 C 94 94
36 Mozambique 27430 G 94 94
37 Mozambique 27431 C 94 94
38 Mozambique 27432 T 94 94
39 Mozambique 27433 A 94 94
40 Mozambique 27434 C 94 94
41 Mozambique 27435 T 94 94
42 Mozambique 27436 T 94 94
43 Mozambique 27437 G 94 94
44 Mozambique 27438 T 94 94
45 Mozambique 27439 G 94 94
46 Mozambique 27440 A 94 94
47 Mozambique 27441 G 94 94
48 Mozambique 27442 C 94 94
49 Mozambique 27443 T 94 94
50 Mozambique 27444 T 94 94
51 Mozambique 27445 T 94 94
52 Mozambique 27446 A 94 94
53 Mozambique 27447 T 94 94
54 Mozambique 27448 C 94 94
55 Mozambique 27449 A 94 94
56 Mozambique 27450 C 94 94
57 Mozambique 27451 T 94 94
58 Mozambique 27452 A 94 94
59 Mozambique 27453 C 94 94
60 Mozambique 27454 C 94 94
61 Mozambique 27455 A 94 94
62 Mozambique 27456 A 94 94
63 Mozambique 27457 G 94 94
64 Mozambique 27458 A 94 94
65 Mozambique 27459 G 94 94
66 Mozambique 27460 T 94 94
67 Mozambique 27461 G 94 94
68 Mozambique 27462 T 94 94
69 Mozambique 27463 G 94 94
70 Mozambique 27464 T 94 94
71 Mozambique 27465 T 94 94
72 Mozambique 27466 A 94 94
73 Mozambique 27467 G 94 94
74 Mozambique 27468 A 94 94
75 Mozambique 27469 G 94 94
76 Mozambique 27470 G 94 94
77 Mozambique 27471 T 94 94
78 Mozambique 27472 A 94 94
79 Mozambique 27473 C 94 94
80 Mozambique 27474 A 94 94
81 Mozambique 27475 A 94 94
82 Mozambique 27476 C 94 94
83 Mozambique 27477 A 94 94
84 Mozambique 27478 G 94 94
85 Mozambique 27479 T 94 94
86 Mozambique 27480 A 94 94
87 Mozambique 27481 C 94 94
88 Mozambique 27482 T 94 94
89 Mozambique 27483 T 94 94
90 Mozambique 27484 T 94 94
91 Mozambique 27485 T 94 94
92 Mozambique 27486 A 94 94
93 Mozambique 27487 A 94 94
94 Mozambique 27488 A 94 94
95 Mozambique 27489 A 94 94
96 Mozambique 27490 G 94 94
97 Mozambique 27491 A 94 94
98 Mozambique 27492 A 94 94
99 Mozambique 27493 C 94 94
100 Mozambique 27494 C T 94 93 Pro34Leu
101 Mozambique 27495 T 94 94
102 Mozambique 27496 T 94 94
103 Mozambique 27497 G 94 94
104 Mozambique 27498 C 94 94
105 Mozambique 27499 T 94 94
106 Mozambique 27500 C 94 94
107 Mozambique 27501 T 94 94
108 Mozambique 27502 T 94 94
109 Mozambique 27503 C 94 94
110 Mozambique 27504 T 94 94
111 Mozambique 27505 G 94 94
112 Mozambique 27506 G 94 94
113 Mozambique 27507 A 94 94
114 Mozambique 27508 A 94 94
115 Mozambique 27509 C 94 94
116 Mozambique 27510 A 94 94
117 Mozambique 27511 T 94 94
118 Mozambique 27512 A 94 94
119 Mozambique 27513 C T 94 93 Tyr40Tyr
120 Mozambique 27514 G 94 94
121 Mozambique 27515 A 94 94
122 Mozambique 27516 G 94 94
123 Mozambique 27517 G 94 94
124 Mozambique 27518 G 94 94
125 Mozambique 27519 C 94 94
126 Mozambique 27520 A 94 94
127 Mozambique 27521 A 94 94
128 Mozambique 27522 T 94 94
129 Mozambique 27523 T 94 94
130 Mozambique 27524 C 94 94
131 Mozambique 27525 A 94 94
132 Mozambique 27526 C 94 94
133 Mozambique 27527 C 94 94
134 Mozambique 27528 A 94 94
135 Mozambique 27529 T 93 93
136 Mozambique 27530 T 93 93
137 Mozambique 27531 T 93 93
138 Mozambique 27532 C 93 93
139 Mozambique 27533 A 93 93
140 Mozambique 27534 T 93 93
141 Mozambique 27535 C 93 93
142 Mozambique 27536 C 93 93
143 Mozambique 27537 T 93 93
144 Mozambique 27538 C 93 93
145 Mozambique 27539 T 93 93
146 Mozambique 27540 A 93 93
147 Mozambique 27541 G 93 93
148 Mozambique 27542 C 93 93
149 Mozambique 27543 T 93 93
150 Mozambique 27544 G 93 93
151 Mozambique 27545 A 93 93
152 Mozambique 27546 T 93 93
153 Mozambique 27547 A 93 93
154 Mozambique 27548 A 93 93
155 Mozambique 27549 C 93 93
156 Mozambique 27550 A 93 93
157 Mozambique 27551 A 93 93
158 Mozambique 27552 A 93 93
159 Mozambique 27553 T 93 93
160 Mozambique 27554 T 93 93
161 Mozambique 27555 T 93 93
162 Mozambique 27556 G 93 93
163 Mozambique 27557 C 93 93
164 Mozambique 27558 A 93 93
165 Mozambique 27559 C 93 93
166 Mozambique 27560 T 93 93
167 Mozambique 27561 G T 93 89 Leu56Leu
168 Mozambique 27562 A 93 93
169 Mozambique 27563 C 93 93
170 Mozambique 27564 T 93 93
171 Mozambique 27565 T 93 93
172 Mozambique 27566 G 93 93
173 Mozambique 27567 C 93 93
174 Mozambique 27568 T 93 93
175 Mozambique 27569 T 93 93
176 Mozambique 27570 T 93 93
177 Mozambique 27571 A 93 93
178 Mozambique 27572 G 93 93
179 Mozambique 27573 C 93 93
180 Mozambique 27574 A 93 93
181 Mozambique 27575 C 93 93
182 Mozambique 27576 T 93 93
183 Mozambique 27577 C 93 93
184 Mozambique 27578 A 93 93
185 Mozambique 27579 A 93 93
186 Mozambique 27580 T 93 93
187 Mozambique 27581 T 93 93
188 Mozambique 27582 T 93 93
189 Mozambique 27583 G 93 93
190 Mozambique 27584 C 93 93
191 Mozambique 27585 T 93 93
192 Mozambique 27586 T 93 93
193 Mozambique 27587 T 93 93
194 Mozambique 27588 T 93 93
195 Mozambique 27589 G 93 93
196 Mozambique 27590 C 93 93
197 Mozambique 27591 T 93 93
198 Mozambique 27592 T 93 93
199 Mozambique 27593 G 93 93
200 Mozambique 27594 T 93 93
201 Mozambique 27595 C 93 93
202 Mozambique 27596 C 93 93
203 Mozambique 27597 T 93 93
204 Mozambique 27598 G 93 93
205 Mozambique 27599 A 93 93
206 Mozambique 27600 C 93 93
207 Mozambique 27601 G 93 93
208 Mozambique 27602 G 93 93
209 Mozambique 27603 C T 93 85 Gly70Gly
210 Mozambique 27604 G 93 93
211 Mozambique 27605 T 93 93
212 Mozambique 27606 A 93 93
213 Mozambique 27607 A 93 93
214 Mozambique 27608 A 93 93
215 Mozambique 27609 A 93 93
216 Mozambique 27610 C 93 93
217 Mozambique 27611 A 93 93
218 Mozambique 27612 C 93 93
219 Mozambique 27613 G 93 93
220 Mozambique 27614 T 93 93
221 Mozambique 27615 C 93 93
222 Mozambique 27616 T 93 93
223 Mozambique 27617 A 93 93
224 Mozambique 27618 T 93 93
225 Mozambique 27619 C 93 93
226 Mozambique 27620 A 93 93
227 Mozambique 27621 G 93 93
228 Mozambique 27622 T 93 93
229 Mozambique 27623 T 93 93
230 Mozambique 27624 A 93 93
231 Mozambique 27625 C 93 92
232 Mozambique 27626 G 93 92
233 Mozambique 27627 T 93 92
234 Mozambique 27628 G T 93 91 Ala79Ser
235 Mozambique 27629 C 93 92
236 Mozambique 27630 C 93 92
237 Mozambique 27631 A 93 92
238 Mozambique 27632 G 93 92
239 Mozambique 27633 A 93 92
240 Mozambique 27634 T 93 92
241 Mozambique 27635 C 93 92
242 Mozambique 27636 A 93 92
243 Mozambique 27637 G 93 92
244 Mozambique 27638 T 93 92
245 Mozambique 27639 T 93 92
246 Mozambique 27640 T 93 92
247 Mozambique 27641 C 93 92
248 Mozambique 27642 A 93 92
249 Mozambique 27643 C 93 92
250 Mozambique 27644 C 93 92
251 Mozambique 27645 T 93 92
252 Mozambique 27646 A 93 92
253 Mozambique 27647 A 93 92
254 Mozambique 27648 A 93 92
255 Mozambique 27649 C 93 92
256 Mozambique 27650 T 93 92
257 Mozambique 27651 G 93 93
258 Mozambique 27652 T 93 93
259 Mozambique 27653 T 93 93
260 Mozambique 27654 C 93 93
261 Mozambique 27655 A 93 93
262 Mozambique 27656 T 93 93
263 Mozambique 27657 C 93 93
264 Mozambique 27658 A 93 93
265 Mozambique 27659 G 93 93
266 Mozambique 27660 A 93 93
267 Mozambique 27661 C 93 93
268 Mozambique 27662 A 93 93
269 Mozambique 27663 A 93 93
270 Mozambique 27664 G 93 93
271 Mozambique 27665 A 93 93
272 Mozambique 27666 G 93 93
273 Mozambique 27667 G 93 93
274 Mozambique 27668 A 93 93
275 Mozambique 27669 A 93 93
276 Mozambique 27670 G 93 93
277 Mozambique 27671 T 93 93
278 Mozambique 27672 T 93 93
279 Mozambique 27673 C A 93 92 Gln94Lys
280 Mozambique 27674 A 93 93
281 Mozambique 27675 A 93 93
282 Mozambique 27676 G 93 93
283 Mozambique 27677 A 93 93
284 Mozambique 27678 A 93 93
285 Mozambique 27679 C 93 93
286 Mozambique 27680 T 93 93
287 Mozambique 27681 T 93 93
288 Mozambique 27682 T 93 93
289 Mozambique 27683 A 93 93
290 Mozambique 27684 C 93 93
291 Mozambique 27685 T 93 93
292 Mozambique 27686 C 93 93
293 Mozambique 27687 T 93 93
294 Mozambique 27688 C 93 93
295 Mozambique 27689 C 93 93
296 Mozambique 27690 A 93 93
297 Mozambique 27691 A 93 93
298 Mozambique 27692 T 93 93
299 Mozambique 27693 T 93 93
300 Mozambique 27694 T 93 93
301 Mozambique 27695 T 93 93
302 Mozambique 27696 T 93 93
303 Mozambique 27697 C 93 93
304 Mozambique 27698 T 93 93
305 Mozambique 27699 T 93 93
306 Mozambique 27700 A 93 93
307 Mozambique 27701 T 93 93
308 Mozambique 27702 T 93 93
309 Mozambique 27703 G 93 93
310 Mozambique 27704 T 93 93
311 Mozambique 27705 T 93 93
312 Mozambique 27706 G 93 93
313 Mozambique 27707 C 93 93
314 Mozambique 27708 G 93 93
315 Mozambique 27709 G 93 93
316 Mozambique 27710 C 93 93
317 Mozambique 27711 A 93 93
318 Mozambique 27712 A 93 93
319 Mozambique 27713 T 93 93
320 Mozambique 27714 A 93 93
321 Mozambique 27715 G 93 93
322 Mozambique 27716 T 93 93
323 Mozambique 27717 G 93 93
324 Mozambique 27718 T 93 93
325 Mozambique 27719 T 93 93
326 Mozambique 27720 T 93 93
327 Mozambique 27721 A 93 92
328 Mozambique 27722 T 93 92
329 Mozambique 27723 A 93 92
330 Mozambique 27724 A 93 93
331 Mozambique 27725 C 93 93
332 Mozambique 27726 A 93 93
333 Mozambique 27727 C 93 93
334 Mozambique 27728 T 93 93
335 Mozambique 27729 T 93 93
336 Mozambique 27730 T 93 93
337 Mozambique 27731 G 93 93
338 Mozambique 27732 C 93 93
339 Mozambique 27733 T 93 93
340 Mozambique 27734 T 93 93
341 Mozambique 27735 C 93 93
342 Mozambique 27736 A 93 93
343 Mozambique 27737 C 93 93
344 Mozambique 27738 A 93 93
345 Mozambique 27739 C T 93 92 Leu116Phe
346 Mozambique 27740 T 93 93
347 Mozambique 27741 C T 93 92 Leu116Leu
348 Mozambique 27742 A 93 93
349 Mozambique 27743 A 93 93
350 Mozambique 27744 A 93 93
351 Mozambique 27745 A 93 93
352 Mozambique 27746 G 93 93
353 Mozambique 27747 A 93 93
354 Mozambique 27748 A 93 93
355 Mozambique 27749 A 93 93
356 Mozambique 27750 G 93 93
357 Mozambique 27751 A 93 93
358 Mozambique 27752 C 93 93
359 Mozambique 27753 A 93 93
360 Mozambique 27754 G 93 93
361 Mozambique 27755 A 93 93
362 Mozambique 27756 A 93 93
363 Mozambique 27757 T 93 93
364 Mozambique 27758 G 92 92
365 Mozambique 27759 A 92 92