National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                               1      
C     18                                      
D     6                                      
E     24                                      
F     30                                     1
G     12                                      
H     9             1                        
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                 1                    
S     21         1                            
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 27394 A 121 121
1 Morocco 27395 T 121 121
2 Morocco 27396 G 121 121
3 Morocco 27397 A 121 121
4 Morocco 27398 A 121 121
5 Morocco 27399 A 121 121
6 Morocco 27400 A 121 121
7 Morocco 27401 T 121 121
8 Morocco 27402 T 121 121
9 Morocco 27403 A 121 121
10 Morocco 27404 T 121 121
11 Morocco 27405 T 121 121
12 Morocco 27406 C 121 121
13 Morocco 27407 T 121 121
14 Morocco 27408 T 121 121
15 Morocco 27409 T 121 121
16 Morocco 27410 T A 121 120 Phe6Tyr
17 Morocco 27411 C 121 121
18 Morocco 27412 T 121 121
19 Morocco 27413 T 121 121
20 Morocco 27414 G 121 121
21 Morocco 27415 G 121 121
22 Morocco 27416 C 121 121
23 Morocco 27417 A 121 121
24 Morocco 27418 C 121 121
25 Morocco 27419 T 121 121
26 Morocco 27420 G 121 121
27 Morocco 27421 A 121 121
28 Morocco 27422 T 121 121
29 Morocco 27423 A 121 121
30 Morocco 27424 A 121 121
31 Morocco 27425 C 121 121
32 Morocco 27426 A 121 121
33 Morocco 27427 C 121 121
34 Morocco 27428 T 121 121
35 Morocco 27429 C 121 121
36 Morocco 27430 G 121 121
37 Morocco 27431 C 121 121
38 Morocco 27432 T 121 121
39 Morocco 27433 A 121 121
40 Morocco 27434 C 121 121
41 Morocco 27435 T 121 121
42 Morocco 27436 T 121 121
43 Morocco 27437 G 121 121
44 Morocco 27438 T 121 121
45 Morocco 27439 G 121 121
46 Morocco 27440 A 121 121
47 Morocco 27441 G 121 121
48 Morocco 27442 C 121 121
49 Morocco 27443 T 121 121
50 Morocco 27444 T 121 121
51 Morocco 27445 T 121 121
52 Morocco 27446 A 121 121
53 Morocco 27447 T 121 121
54 Morocco 27448 C 121 121
55 Morocco 27449 A 121 121
56 Morocco 27450 C 121 121
57 Morocco 27451 T 121 121
58 Morocco 27452 A 121 121
59 Morocco 27453 C 121 121
60 Morocco 27454 C 121 121
61 Morocco 27455 A 121 121
62 Morocco 27456 A 121 121
63 Morocco 27457 G 121 121
64 Morocco 27458 A 121 121
65 Morocco 27459 G 121 121
66 Morocco 27460 T 121 121
67 Morocco 27461 G 121 121
68 Morocco 27462 T 121 121
69 Morocco 27463 G 121 121
70 Morocco 27464 T 121 121
71 Morocco 27465 T 121 121
72 Morocco 27466 A 121 121
73 Morocco 27467 G 121 121
74 Morocco 27468 A 121 121
75 Morocco 27469 G 121 121
76 Morocco 27470 G 121 121
77 Morocco 27471 T 120 120
78 Morocco 27472 A 120 120
79 Morocco 27473 C 120 120
80 Morocco 27474 A 120 120
81 Morocco 27475 A 120 120
82 Morocco 27476 C 120 120
83 Morocco 27477 A 120 120
84 Morocco 27478 G 120 120
85 Morocco 27479 T 120 120
86 Morocco 27480 A 120 120
87 Morocco 27481 C 120 120
88 Morocco 27482 T 120 120
89 Morocco 27483 T 120 120
90 Morocco 27484 T 120 120
91 Morocco 27485 T 120 120
92 Morocco 27486 A 120 120
93 Morocco 27487 A 120 120
94 Morocco 27488 A 120 120
95 Morocco 27489 A 120 120
96 Morocco 27490 G 120 120
97 Morocco 27491 A 120 120
98 Morocco 27492 A 120 120
99 Morocco 27493 C 120 120
100 Morocco 27494 C 120 120
101 Morocco 27495 T 120 120
102 Morocco 27496 T 120 120
103 Morocco 27497 G 120 120
104 Morocco 27498 C 120 120
105 Morocco 27499 T 120 120
106 Morocco 27500 C 120 120
107 Morocco 27501 T 120 120
108 Morocco 27502 T 120 120
109 Morocco 27503 C 120 120
110 Morocco 27504 T 120 120
111 Morocco 27505 G 120 120
112 Morocco 27506 G 120 120
113 Morocco 27507 A 120 120
114 Morocco 27508 A 120 120
115 Morocco 27509 C 120 120
116 Morocco 27510 A 120 120
117 Morocco 27511 T 120 120
118 Morocco 27512 A 114 114
119 Morocco 27513 C 114 114
120 Morocco 27514 G 114 114
121 Morocco 27515 A 114 114
122 Morocco 27516 G 114 114
123 Morocco 27517 G 114 114
124 Morocco 27518 G 114 114
125 Morocco 27519 C 114 114
126 Morocco 27520 A 114 114
127 Morocco 27521 A 114 114
128 Morocco 27522 T 114 114
129 Morocco 27523 T 114 114
130 Morocco 27524 C 114 114
131 Morocco 27525 A 114 114
132 Morocco 27526 C 114 114
133 Morocco 27527 C 114 114
134 Morocco 27528 A 114 114
135 Morocco 27529 T 114 114
136 Morocco 27530 T 114 114
137 Morocco 27531 T 114 114
138 Morocco 27532 C 114 114
139 Morocco 27533 A 111 111
140 Morocco 27534 T 107 107
141 Morocco 27535 C 107 107
142 Morocco 27536 C 107 107
143 Morocco 27537 T 107 107
144 Morocco 27538 C 107 107
145 Morocco 27539 T 107 107
146 Morocco 27540 A 107 107
147 Morocco 27541 G 107 107
148 Morocco 27542 C 107 107
149 Morocco 27543 T 107 107
150 Morocco 27544 G 107 107
151 Morocco 27545 A 107 107
152 Morocco 27546 T 107 107
153 Morocco 27547 A 107 107
154 Morocco 27548 A 107 107
155 Morocco 27549 C 107 107
156 Morocco 27550 A 107 107
157 Morocco 27551 A 107 107
158 Morocco 27552 A 107 107
159 Morocco 27553 T 107 107
160 Morocco 27554 T 107 107
161 Morocco 27555 T 107 107
162 Morocco 27556 G 107 107
163 Morocco 27557 C 107 107
164 Morocco 27558 A 107 107
165 Morocco 27559 C 107 107
166 Morocco 27560 T 107 107
167 Morocco 27561 G 107 107
168 Morocco 27562 A 107 107
169 Morocco 27563 C 107 107
170 Morocco 27564 T 107 107
171 Morocco 27565 T 107 107
172 Morocco 27566 G 107 107
173 Morocco 27567 C 107 107
174 Morocco 27568 T 107 107
175 Morocco 27569 T 107 107
176 Morocco 27570 T 107 107
177 Morocco 27571 A 107 107
178 Morocco 27572 G 107 107
179 Morocco 27573 C 107 107
180 Morocco 27574 A 107 107
181 Morocco 27575 C 107 107
182 Morocco 27576 T 107 107
183 Morocco 27577 C 107 107
184 Morocco 27578 A 107 107
185 Morocco 27579 A 107 107
186 Morocco 27580 T 107 107
187 Morocco 27581 T 107 107
188 Morocco 27582 T 107 107
189 Morocco 27583 G 107 107
190 Morocco 27584 C 107 107
191 Morocco 27585 T 107 107
192 Morocco 27586 T 107 107
193 Morocco 27587 T 107 107
194 Morocco 27588 T 107 107
195 Morocco 27589 G 107 107
196 Morocco 27590 C 107 107
197 Morocco 27591 T 107 107
198 Morocco 27592 T 107 107
199 Morocco 27593 G 107 107
200 Morocco 27594 T 107 107
201 Morocco 27595 C 107 107
202 Morocco 27596 C 107 107
203 Morocco 27597 T 107 107
204 Morocco 27598 G 107 107
205 Morocco 27599 A 107 107
206 Morocco 27600 C 107 107
207 Morocco 27601 G 107 107
208 Morocco 27602 G 107 107
209 Morocco 27603 C 107 107
210 Morocco 27604 G 107 107
211 Morocco 27605 T 107 107
212 Morocco 27606 A 107 107
213 Morocco 27607 A 107 107
214 Morocco 27608 A 107 107
215 Morocco 27609 A 107 107
216 Morocco 27610 C 107 107
217 Morocco 27611 A 107 107
218 Morocco 27612 C T 107 106 His73His
219 Morocco 27613 G 107 107
220 Morocco 27614 T 107 107
221 Morocco 27615 C 107 107
222 Morocco 27616 T 107 107
223 Morocco 27617 A 107 107
224 Morocco 27618 T 107 107
225 Morocco 27619 C 107 107
226 Morocco 27620 A 107 107
227 Morocco 27621 G 107 107
228 Morocco 27622 T 107 107
229 Morocco 27623 T 107 107
230 Morocco 27624 A 107 107
231 Morocco 27625 C 107 107
232 Morocco 27626 G 107 107
233 Morocco 27627 T 107 107
234 Morocco 27628 G 107 107
235 Morocco 27629 C 107 107
236 Morocco 27630 C 107 107
237 Morocco 27631 A 107 107
238 Morocco 27632 G A 107 106 Arg80Lys
239 Morocco 27633 A 107 107
240 Morocco 27634 T 107 107
241 Morocco 27635 C 107 107
242 Morocco 27636 A 107 107
243 Morocco 27637 G 107 107
244 Morocco 27638 T 107 107
245 Morocco 27639 T 107 107
246 Morocco 27640 T 107 107
247 Morocco 27641 C 107 107
248 Morocco 27642 A 107 107
249 Morocco 27643 C 107 107
250 Morocco 27644 C 107 107
251 Morocco 27645 T 107 107
252 Morocco 27646 A 107 107
253 Morocco 27647 A 107 107
254 Morocco 27648 A 107 107
255 Morocco 27649 C 107 107
256 Morocco 27650 T 107 107
257 Morocco 27651 G 107 107
258 Morocco 27652 T 107 107
259 Morocco 27653 T 107 107
260 Morocco 27654 C 107 107
261 Morocco 27655 A 107 107
262 Morocco 27656 T 107 107
263 Morocco 27657 C 107 107
264 Morocco 27658 A 107 107
265 Morocco 27659 G 107 107
266 Morocco 27660 A 107 107
267 Morocco 27661 C 107 107
268 Morocco 27662 A 107 107
269 Morocco 27663 A 107 107
270 Morocco 27664 G 107 107
271 Morocco 27665 A 107 107
272 Morocco 27666 G 107 107
273 Morocco 27667 G 107 107
274 Morocco 27668 A 107 107
275 Morocco 27669 A 107 107
276 Morocco 27670 G 107 107
277 Morocco 27671 T 107 107
278 Morocco 27672 T 107 107
279 Morocco 27673 C 107 107
280 Morocco 27674 A 107 107
281 Morocco 27675 A 107 107
282 Morocco 27676 G 107 107
283 Morocco 27677 A 107 107
284 Morocco 27678 A 107 107
285 Morocco 27679 C 107 107
286 Morocco 27680 T 107 107
287 Morocco 27681 T 107 107
288 Morocco 27682 T 107 107
289 Morocco 27683 A 107 107
290 Morocco 27684 C 107 107
291 Morocco 27685 T 107 107
292 Morocco 27686 C T 107 106 Ser98Phe
293 Morocco 27687 T 107 107
294 Morocco 27688 C 107 107
295 Morocco 27689 C 107 107
296 Morocco 27690 A 107 107
297 Morocco 27691 A 107 107
298 Morocco 27692 T 107 107
299 Morocco 27693 T 107 107
300 Morocco 27694 T 107 107
301 Morocco 27695 T 107 107
302 Morocco 27696 T 107 107
303 Morocco 27697 C 107 107
304 Morocco 27698 T 107 107
305 Morocco 27699 T 107 107
306 Morocco 27700 A 107 107
307 Morocco 27701 T 107 107
308 Morocco 27702 T 107 107
309 Morocco 27703 G 107 107
310 Morocco 27704 T 107 107
311 Morocco 27705 T 107 107
312 Morocco 27706 G T 107 106 Ala105Ser
313 Morocco 27707 C 107 107
314 Morocco 27708 G 107 107
315 Morocco 27709 G 107 107
316 Morocco 27710 C 107 107
317 Morocco 27711 A 107 107
318 Morocco 27712 A 107 107
319 Morocco 27713 T 107 107
320 Morocco 27714 A 107 107
321 Morocco 27715 G 107 107
322 Morocco 27716 T 107 107
323 Morocco 27717 G 107 107
324 Morocco 27718 T 107 107
325 Morocco 27719 T 107 107
326 Morocco 27720 T 107 107
327 Morocco 27721 A 107 107
328 Morocco 27722 T 107 107
329 Morocco 27723 A 107 107
330 Morocco 27724 A 107 107
331 Morocco 27725 C 107 107
332 Morocco 27726 A 107 107
333 Morocco 27727 C 107 107
334 Morocco 27728 T 107 107
335 Morocco 27729 T 107 107
336 Morocco 27730 T 107 107
337 Morocco 27731 G 107 107
338 Morocco 27732 C 107 107
339 Morocco 27733 T 107 107
340 Morocco 27734 T 107 107
341 Morocco 27735 C 107 107
342 Morocco 27736 A 107 107
343 Morocco 27737 C 107 107
344 Morocco 27738 A 107 107
345 Morocco 27739 C 107 107
346 Morocco 27740 T 107 107
347 Morocco 27741 C 107 107
348 Morocco 27742 A 107 107
349 Morocco 27743 A 107 107
350 Morocco 27744 A 107 107
351 Morocco 27745 A 107 107
352 Morocco 27746 G 107 107
353 Morocco 27747 A 107 107
354 Morocco 27748 A 107 107
355 Morocco 27749 A 107 107
356 Morocco 27750 G 107 107
357 Morocco 27751 A 107 107
358 Morocco 27752 C 107 107
359 Morocco 27753 A 107 107
360 Morocco 27754 G 107 107
361 Morocco 27755 A 107 107
362 Morocco 27756 A 107 107
363 Morocco 27757 T 107 107
364 Morocco 27758 G 107 107
365 Morocco 27759 A 107 107