National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 27394 A 12 12
1 Montenegro 27395 T 12 12
2 Montenegro 27396 G 12 12
3 Montenegro 27397 A 12 12
4 Montenegro 27398 A 12 12
5 Montenegro 27399 A 12 12
6 Montenegro 27400 A 12 12
7 Montenegro 27401 T 12 12
8 Montenegro 27402 T 12 12
9 Montenegro 27403 A 12 12
10 Montenegro 27404 T 12 12
11 Montenegro 27405 T 12 12
12 Montenegro 27406 C 12 12
13 Montenegro 27407 T 12 12
14 Montenegro 27408 T 12 12
15 Montenegro 27409 T 12 12
16 Montenegro 27410 T 12 12
17 Montenegro 27411 C 12 12
18 Montenegro 27412 T 12 12
19 Montenegro 27413 T 12 12
20 Montenegro 27414 G 12 12
21 Montenegro 27415 G 12 12
22 Montenegro 27416 C 12 12
23 Montenegro 27417 A 12 12
24 Montenegro 27418 C 12 12
25 Montenegro 27419 T 12 12
26 Montenegro 27420 G 12 12
27 Montenegro 27421 A 12 12
28 Montenegro 27422 T 12 12
29 Montenegro 27423 A 12 12
30 Montenegro 27424 A 12 12
31 Montenegro 27425 C 12 12
32 Montenegro 27426 A 12 12
33 Montenegro 27427 C 12 12
34 Montenegro 27428 T 12 12
35 Montenegro 27429 C 12 12
36 Montenegro 27430 G 12 12
37 Montenegro 27431 C 12 12
38 Montenegro 27432 T 12 12
39 Montenegro 27433 A 12 12
40 Montenegro 27434 C 12 12
41 Montenegro 27435 T 12 12
42 Montenegro 27436 T 12 12
43 Montenegro 27437 G 12 12
44 Montenegro 27438 T 12 12
45 Montenegro 27439 G 12 12
46 Montenegro 27440 A 12 12
47 Montenegro 27441 G 12 12
48 Montenegro 27442 C 12 12
49 Montenegro 27443 T 12 12
50 Montenegro 27444 T 12 12
51 Montenegro 27445 T 12 12
52 Montenegro 27446 A 12 12
53 Montenegro 27447 T 12 12
54 Montenegro 27448 C 12 12
55 Montenegro 27449 A 12 12
56 Montenegro 27450 C 12 12
57 Montenegro 27451 T 12 12
58 Montenegro 27452 A 12 12
59 Montenegro 27453 C 12 12
60 Montenegro 27454 C 12 12
61 Montenegro 27455 A 12 12
62 Montenegro 27456 A 12 12
63 Montenegro 27457 G 12 12
64 Montenegro 27458 A 12 12
65 Montenegro 27459 G 12 12
66 Montenegro 27460 T 12 12
67 Montenegro 27461 G 12 12
68 Montenegro 27462 T 12 12
69 Montenegro 27463 G 12 12
70 Montenegro 27464 T 12 12
71 Montenegro 27465 T 12 12
72 Montenegro 27466 A 12 12
73 Montenegro 27467 G 12 12
74 Montenegro 27468 A 12 12
75 Montenegro 27469 G 12 12
76 Montenegro 27470 G 12 12
77 Montenegro 27471 T 12 12
78 Montenegro 27472 A 12 12
79 Montenegro 27473 C 12 12
80 Montenegro 27474 A 12 12
81 Montenegro 27475 A 12 12
82 Montenegro 27476 C 12 12
83 Montenegro 27477 A 12 12
84 Montenegro 27478 G 12 12
85 Montenegro 27479 T 12 12
86 Montenegro 27480 A 12 12
87 Montenegro 27481 C 12 12
88 Montenegro 27482 T 12 12
89 Montenegro 27483 T 12 12
90 Montenegro 27484 T 12 12
91 Montenegro 27485 T 12 12
92 Montenegro 27486 A 12 12
93 Montenegro 27487 A 12 12
94 Montenegro 27488 A 12 12
95 Montenegro 27489 A 12 12
96 Montenegro 27490 G 12 12
97 Montenegro 27491 A 12 12
98 Montenegro 27492 A 12 12
99 Montenegro 27493 C 12 12
100 Montenegro 27494 C 12 12
101 Montenegro 27495 T 12 12
102 Montenegro 27496 T 12 12
103 Montenegro 27497 G 12 12
104 Montenegro 27498 C 12 12
105 Montenegro 27499 T 12 12
106 Montenegro 27500 C 12 12
107 Montenegro 27501 T 12 12
108 Montenegro 27502 T 12 12
109 Montenegro 27503 C 12 12
110 Montenegro 27504 T 12 12
111 Montenegro 27505 G 12 12
112 Montenegro 27506 G 12 12
113 Montenegro 27507 A 12 12
114 Montenegro 27508 A 12 12
115 Montenegro 27509 C 12 12
116 Montenegro 27510 A 12 12
117 Montenegro 27511 T 12 12
118 Montenegro 27512 A 12 12
119 Montenegro 27513 C 12 12
120 Montenegro 27514 G 12 12
121 Montenegro 27515 A 12 12
122 Montenegro 27516 G 12 12
123 Montenegro 27517 G 12 12
124 Montenegro 27518 G 12 12
125 Montenegro 27519 C 12 12
126 Montenegro 27520 A 12 12
127 Montenegro 27521 A 12 12
128 Montenegro 27522 T 12 12
129 Montenegro 27523 T 12 12
130 Montenegro 27524 C 12 12
131 Montenegro 27525 A 12 12
132 Montenegro 27526 C 12 12
133 Montenegro 27527 C 12 12
134 Montenegro 27528 A 12 12
135 Montenegro 27529 T 12 12
136 Montenegro 27530 T 12 12
137 Montenegro 27531 T 12 12
138 Montenegro 27532 C 12 12
139 Montenegro 27533 A 12 12
140 Montenegro 27534 T 12 12
141 Montenegro 27535 C 12 12
142 Montenegro 27536 C 12 12
143 Montenegro 27537 T 12 12
144 Montenegro 27538 C 12 12
145 Montenegro 27539 T 12 12
146 Montenegro 27540 A 12 12
147 Montenegro 27541 G 12 12
148 Montenegro 27542 C 12 12
149 Montenegro 27543 T 12 12
150 Montenegro 27544 G 12 12
151 Montenegro 27545 A 12 12
152 Montenegro 27546 T 12 12
153 Montenegro 27547 A 12 12
154 Montenegro 27548 A 12 12
155 Montenegro 27549 C 12 12
156 Montenegro 27550 A 12 12
157 Montenegro 27551 A 12 12
158 Montenegro 27552 A 12 12
159 Montenegro 27553 T 12 12
160 Montenegro 27554 T 12 12
161 Montenegro 27555 T 12 12
162 Montenegro 27556 G 12 12
163 Montenegro 27557 C 12 12
164 Montenegro 27558 A 12 12
165 Montenegro 27559 C 12 12
166 Montenegro 27560 T 12 12
167 Montenegro 27561 G 12 12
168 Montenegro 27562 A 12 12
169 Montenegro 27563 C 12 12
170 Montenegro 27564 T 12 12
171 Montenegro 27565 T 12 12
172 Montenegro 27566 G 12 12
173 Montenegro 27567 C 12 12
174 Montenegro 27568 T 12 12
175 Montenegro 27569 T 12 12
176 Montenegro 27570 T 12 12
177 Montenegro 27571 A 12 12
178 Montenegro 27572 G 12 12
179 Montenegro 27573 C 12 12
180 Montenegro 27574 A 12 12
181 Montenegro 27575 C 12 12
182 Montenegro 27576 T 12 12
183 Montenegro 27577 C 12 12
184 Montenegro 27578 A 12 12
185 Montenegro 27579 A 12 12
186 Montenegro 27580 T 12 12
187 Montenegro 27581 T 12 12
188 Montenegro 27582 T 12 12
189 Montenegro 27583 G 12 12
190 Montenegro 27584 C 12 12
191 Montenegro 27585 T 12 12
192 Montenegro 27586 T 12 12
193 Montenegro 27587 T 12 12
194 Montenegro 27588 T 12 12
195 Montenegro 27589 G 12 12
196 Montenegro 27590 C 12 12
197 Montenegro 27591 T 12 12
198 Montenegro 27592 T 12 12
199 Montenegro 27593 G 12 12
200 Montenegro 27594 T 12 12
201 Montenegro 27595 C 12 12
202 Montenegro 27596 C 12 12
203 Montenegro 27597 T 12 12
204 Montenegro 27598 G 12 12
205 Montenegro 27599 A 12 12
206 Montenegro 27600 C 12 12
207 Montenegro 27601 G 12 12
208 Montenegro 27602 G 12 12
209 Montenegro 27603 C 12 12
210 Montenegro 27604 G 12 12
211 Montenegro 27605 T 12 12
212 Montenegro 27606 A 12 12
213 Montenegro 27607 A 12 12
214 Montenegro 27608 A 12 12
215 Montenegro 27609 A 12 12
216 Montenegro 27610 C 12 12
217 Montenegro 27611 A 12 12
218 Montenegro 27612 C 12 12
219 Montenegro 27613 G 12 12
220 Montenegro 27614 T 12 12
221 Montenegro 27615 C 12 12
222 Montenegro 27616 T 12 12
223 Montenegro 27617 A 12 12
224 Montenegro 27618 T 12 12
225 Montenegro 27619 C 12 12
226 Montenegro 27620 A 12 12
227 Montenegro 27621 G 12 12
228 Montenegro 27622 T 12 12
229 Montenegro 27623 T 12 12
230 Montenegro 27624 A 12 12
231 Montenegro 27625 C 12 12
232 Montenegro 27626 G 12 12
233 Montenegro 27627 T 12 12
234 Montenegro 27628 G 12 12
235 Montenegro 27629 C 12 12
236 Montenegro 27630 C 12 12
237 Montenegro 27631 A 12 12
238 Montenegro 27632 G 12 12
239 Montenegro 27633 A 12 12
240 Montenegro 27634 T 12 12
241 Montenegro 27635 C 12 12
242 Montenegro 27636 A 12 12
243 Montenegro 27637 G 12 12
244 Montenegro 27638 T 12 12
245 Montenegro 27639 T 12 12
246 Montenegro 27640 T 12 12
247 Montenegro 27641 C 12 12
248 Montenegro 27642 A 12 12
249 Montenegro 27643 C 12 12
250 Montenegro 27644 C 12 12
251 Montenegro 27645 T 12 12
252 Montenegro 27646 A 12 12
253 Montenegro 27647 A 12 12
254 Montenegro 27648 A 12 12
255 Montenegro 27649 C 12 12
256 Montenegro 27650 T 12 12
257 Montenegro 27651 G 12 12
258 Montenegro 27652 T 12 12
259 Montenegro 27653 T 12 12
260 Montenegro 27654 C 12 12
261 Montenegro 27655 A 12 12
262 Montenegro 27656 T 12 12
263 Montenegro 27657 C 12 12
264 Montenegro 27658 A 12 12
265 Montenegro 27659 G 12 12
266 Montenegro 27660 A 12 12
267 Montenegro 27661 C 12 12
268 Montenegro 27662 A 12 12
269 Montenegro 27663 A 12 12
270 Montenegro 27664 G 12 12
271 Montenegro 27665 A 12 12
272 Montenegro 27666 G 12 12
273 Montenegro 27667 G 12 12
274 Montenegro 27668 A 12 12
275 Montenegro 27669 A 12 12
276 Montenegro 27670 G 12 12
277 Montenegro 27671 T 12 12
278 Montenegro 27672 T 12 12
279 Montenegro 27673 C 12 12
280 Montenegro 27674 A 12 12
281 Montenegro 27675 A 12 12
282 Montenegro 27676 G 12 12
283 Montenegro 27677 A 12 12
284 Montenegro 27678 A 12 12
285 Montenegro 27679 C 12 12
286 Montenegro 27680 T 12 12
287 Montenegro 27681 T 12 12
288 Montenegro 27682 T 12 12
289 Montenegro 27683 A 12 12
290 Montenegro 27684 C 12 12
291 Montenegro 27685 T 12 12
292 Montenegro 27686 C 12 12
293 Montenegro 27687 T 12 12
294 Montenegro 27688 C 12 12
295 Montenegro 27689 C 12 12
296 Montenegro 27690 A 12 12
297 Montenegro 27691 A 12 12
298 Montenegro 27692 T 12 12
299 Montenegro 27693 T 12 12
300 Montenegro 27694 T 12 12
301 Montenegro 27695 T 12 12
302 Montenegro 27696 T 12 12
303 Montenegro 27697 C 12 12
304 Montenegro 27698 T 12 12
305 Montenegro 27699 T 12 12
306 Montenegro 27700 A 12 12
307 Montenegro 27701 T 12 12
308 Montenegro 27702 T 12 12
309 Montenegro 27703 G 12 12
310 Montenegro 27704 T 12 12
311 Montenegro 27705 T 12 12
312 Montenegro 27706 G 12 12
313 Montenegro 27707 C 12 12
314 Montenegro 27708 G 12 12
315 Montenegro 27709 G 12 12
316 Montenegro 27710 C 12 12
317 Montenegro 27711 A 12 12
318 Montenegro 27712 A 12 12
319 Montenegro 27713 T 12 12
320 Montenegro 27714 A 12 12
321 Montenegro 27715 G 12 12
322 Montenegro 27716 T 12 12
323 Montenegro 27717 G 12 12
324 Montenegro 27718 T 12 12
325 Montenegro 27719 T 12 12
326 Montenegro 27720 T 12 12
327 Montenegro 27721 A 12 12
328 Montenegro 27722 T 12 12
329 Montenegro 27723 A 12 12
330 Montenegro 27724 A 12 12
331 Montenegro 27725 C 12 12
332 Montenegro 27726 A 12 12
333 Montenegro 27727 C 12 12
334 Montenegro 27728 T 12 12
335 Montenegro 27729 T 12 12
336 Montenegro 27730 T 12 12
337 Montenegro 27731 G 12 12
338 Montenegro 27732 C 12 12
339 Montenegro 27733 T 12 12
340 Montenegro 27734 T 12 12
341 Montenegro 27735 C 12 12
342 Montenegro 27736 A 12 12
343 Montenegro 27737 C 12 12
344 Montenegro 27738 A 12 12
345 Montenegro 27739 C 12 12
346 Montenegro 27740 T 12 12
347 Montenegro 27741 C 12 12
348 Montenegro 27742 A 12 12
349 Montenegro 27743 A 12 12
350 Montenegro 27744 A 12 12
351 Montenegro 27745 A 12 12
352 Montenegro 27746 G 12 12
353 Montenegro 27747 A 12 12
354 Montenegro 27748 A 12 12
355 Montenegro 27749 A 12 12
356 Montenegro 27750 G 12 12
357 Montenegro 27751 A 12 12
358 Montenegro 27752 C 12 12
359 Montenegro 27753 A 12 12
360 Montenegro 27754 G 12 12
361 Montenegro 27755 A 12 12
362 Montenegro 27756 A 12 12
363 Montenegro 27757 T 12 12
364 Montenegro 27758 G 12 12
365 Montenegro 27759 A 12 12