National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45         1                            
M     6                                      
N     6     1                         1      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 27394 A 7 7
1 Mongolia 27395 T 7 7
2 Mongolia 27396 G 7 7
3 Mongolia 27397 A 7 7
4 Mongolia 27398 A 7 7
5 Mongolia 27399 A 7 7
6 Mongolia 27400 A 7 7
7 Mongolia 27401 T 7 7
8 Mongolia 27402 T 7 7
9 Mongolia 27403 A 7 7
10 Mongolia 27404 T 7 7
11 Mongolia 27405 T 7 7
12 Mongolia 27406 C 7 7
13 Mongolia 27407 T 7 7
14 Mongolia 27408 T 7 7
15 Mongolia 27409 T 7 7
16 Mongolia 27410 T 7 7
17 Mongolia 27411 C 7 7
18 Mongolia 27412 T 7 7
19 Mongolia 27413 T 7 7
20 Mongolia 27414 G 7 7
21 Mongolia 27415 G 7 7
22 Mongolia 27416 C 7 7
23 Mongolia 27417 A 7 7
24 Mongolia 27418 C 7 7
25 Mongolia 27419 T 7 7
26 Mongolia 27420 G 7 7
27 Mongolia 27421 A 7 7
28 Mongolia 27422 T 7 7
29 Mongolia 27423 A 7 7
30 Mongolia 27424 A 7 7
31 Mongolia 27425 C 7 7
32 Mongolia 27426 A 7 7
33 Mongolia 27427 C 7 7
34 Mongolia 27428 T 7 7
35 Mongolia 27429 C 7 7
36 Mongolia 27430 G 7 7
37 Mongolia 27431 C 7 7
38 Mongolia 27432 T 7 7
39 Mongolia 27433 A 7 7
40 Mongolia 27434 C 7 7
41 Mongolia 27435 T 7 7
42 Mongolia 27436 T 7 7
43 Mongolia 27437 G 7 7
44 Mongolia 27438 T 7 7
45 Mongolia 27439 G 7 7
46 Mongolia 27440 A 7 7
47 Mongolia 27441 G 7 7
48 Mongolia 27442 C 7 7
49 Mongolia 27443 T 7 7
50 Mongolia 27444 T 7 7
51 Mongolia 27445 T 7 7
52 Mongolia 27446 A 7 7
53 Mongolia 27447 T 7 7
54 Mongolia 27448 C 7 7
55 Mongolia 27449 A 7 7
56 Mongolia 27450 C 7 7
57 Mongolia 27451 T 7 7
58 Mongolia 27452 A 7 7
59 Mongolia 27453 C 7 7
60 Mongolia 27454 C 7 7
61 Mongolia 27455 A 7 7
62 Mongolia 27456 A 7 7
63 Mongolia 27457 G 7 7
64 Mongolia 27458 A 7 7
65 Mongolia 27459 G 7 7
66 Mongolia 27460 T 7 7
67 Mongolia 27461 G 7 7
68 Mongolia 27462 T 7 7
69 Mongolia 27463 G 7 7
70 Mongolia 27464 T 7 7
71 Mongolia 27465 T 7 7
72 Mongolia 27466 A 7 7
73 Mongolia 27467 G 7 7
74 Mongolia 27468 A 7 7
75 Mongolia 27469 G 7 7
76 Mongolia 27470 G 7 7
77 Mongolia 27471 T 7 7
78 Mongolia 27472 A 7 7
79 Mongolia 27473 C 7 7
80 Mongolia 27474 A 7 7
81 Mongolia 27475 A 7 7
82 Mongolia 27476 C 7 7
83 Mongolia 27477 A 7 7
84 Mongolia 27478 G 7 7
85 Mongolia 27479 T 7 7
86 Mongolia 27480 A 7 7
87 Mongolia 27481 C 7 7
88 Mongolia 27482 T 7 7
89 Mongolia 27483 T 7 7
90 Mongolia 27484 T 7 7
91 Mongolia 27485 T 7 7
92 Mongolia 27486 A T 7 0 Leu31Phe
93 Mongolia 27487 A 7 7
94 Mongolia 27488 A 7 7
95 Mongolia 27489 A 7 7
96 Mongolia 27490 G 7 7
97 Mongolia 27491 A 7 7
98 Mongolia 27492 A 7 7
99 Mongolia 27493 C 7 7
100 Mongolia 27494 C 7 7
101 Mongolia 27495 T 7 7
102 Mongolia 27496 T 7 7
103 Mongolia 27497 G 7 7
104 Mongolia 27498 C 7 7
105 Mongolia 27499 T 7 7
106 Mongolia 27500 C 7 7
107 Mongolia 27501 T 7 7
108 Mongolia 27502 T 7 7
109 Mongolia 27503 C 7 7
110 Mongolia 27504 T 7 7
111 Mongolia 27505 G 7 7
112 Mongolia 27506 G 7 7
113 Mongolia 27507 A 7 7
114 Mongolia 27508 A 7 7
115 Mongolia 27509 C 7 7
116 Mongolia 27510 A 7 7
117 Mongolia 27511 T 7 7
118 Mongolia 27512 A 7 7
119 Mongolia 27513 C 7 7
120 Mongolia 27514 G 7 7
121 Mongolia 27515 A 7 7
122 Mongolia 27516 G 7 7
123 Mongolia 27517 G 7 7
124 Mongolia 27518 G 7 7
125 Mongolia 27519 C 7 7
126 Mongolia 27520 A G 7 0 Asn43Asp
127 Mongolia 27521 A G 7 0 Asn43Ser
128 Mongolia 27522 T 7 7
129 Mongolia 27523 T 7 7
130 Mongolia 27524 C 7 7
131 Mongolia 27525 A 7 7
132 Mongolia 27526 C 7 7
133 Mongolia 27527 C 7 7
134 Mongolia 27528 A 7 7
135 Mongolia 27529 T 7 7
136 Mongolia 27530 T 7 7
137 Mongolia 27531 T 7 7
138 Mongolia 27532 C 7 7
139 Mongolia 27533 A 7 7
140 Mongolia 27534 T 7 7
141 Mongolia 27535 C 7 7
142 Mongolia 27536 C 7 7
143 Mongolia 27537 T 7 7
144 Mongolia 27538 C 7 7
145 Mongolia 27539 T 7 7
146 Mongolia 27540 A 7 7
147 Mongolia 27541 G 7 7
148 Mongolia 27542 C 7 7
149 Mongolia 27543 T 7 7
150 Mongolia 27544 G 7 7
151 Mongolia 27545 A 7 7
152 Mongolia 27546 T 7 7
153 Mongolia 27547 A 7 7
154 Mongolia 27548 A 7 7
155 Mongolia 27549 C 7 7
156 Mongolia 27550 A 7 7
157 Mongolia 27551 A 7 7
158 Mongolia 27552 A 7 7
159 Mongolia 27553 T 7 7
160 Mongolia 27554 T 7 7
161 Mongolia 27555 T 7 7
162 Mongolia 27556 G 7 7
163 Mongolia 27557 C 7 7
164 Mongolia 27558 A 7 7
165 Mongolia 27559 C 7 7
166 Mongolia 27560 T 7 7
167 Mongolia 27561 G 7 7
168 Mongolia 27562 A 7 7
169 Mongolia 27563 C 7 7
170 Mongolia 27564 T 7 7
171 Mongolia 27565 T 7 7
172 Mongolia 27566 G 7 7
173 Mongolia 27567 C 7 7
174 Mongolia 27568 T 7 7
175 Mongolia 27569 T 7 7
176 Mongolia 27570 T 7 7
177 Mongolia 27571 A 7 7
178 Mongolia 27572 G 7 7
179 Mongolia 27573 C 7 7
180 Mongolia 27574 A 7 7
181 Mongolia 27575 C 7 7
182 Mongolia 27576 T 7 7
183 Mongolia 27577 C 7 7
184 Mongolia 27578 A 7 7
185 Mongolia 27579 A 7 7
186 Mongolia 27580 T 7 7
187 Mongolia 27581 T 7 7
188 Mongolia 27582 T 7 7
189 Mongolia 27583 G 7 7
190 Mongolia 27584 C 7 7
191 Mongolia 27585 T 7 7
192 Mongolia 27586 T 7 7
193 Mongolia 27587 T 7 7
194 Mongolia 27588 T 7 7
195 Mongolia 27589 G 7 7
196 Mongolia 27590 C 7 7
197 Mongolia 27591 T 7 7
198 Mongolia 27592 T 7 7
199 Mongolia 27593 G 7 7
200 Mongolia 27594 T 7 7
201 Mongolia 27595 C 7 7
202 Mongolia 27596 C 7 7
203 Mongolia 27597 T 7 7
204 Mongolia 27598 G 7 7
205 Mongolia 27599 A 7 7
206 Mongolia 27600 C 7 7
207 Mongolia 27601 G 7 7
208 Mongolia 27602 G 7 7
209 Mongolia 27603 C 7 7
210 Mongolia 27604 G 7 7
211 Mongolia 27605 T 7 7
212 Mongolia 27606 A 7 7
213 Mongolia 27607 A 7 7
214 Mongolia 27608 A 7 7
215 Mongolia 27609 A 7 7
216 Mongolia 27610 C 7 7
217 Mongolia 27611 A 7 7
218 Mongolia 27612 C 7 7
219 Mongolia 27613 G 7 7
220 Mongolia 27614 T 7 7
221 Mongolia 27615 C 7 7
222 Mongolia 27616 T 7 7
223 Mongolia 27617 A 7 7
224 Mongolia 27618 T 7 7
225 Mongolia 27619 C 7 7
226 Mongolia 27620 A 7 7
227 Mongolia 27621 G 7 7
228 Mongolia 27622 T 7 7
229 Mongolia 27623 T 7 7
230 Mongolia 27624 A 7 7
231 Mongolia 27625 C 7 7
232 Mongolia 27626 G 7 7
233 Mongolia 27627 T 7 7
234 Mongolia 27628 G 7 7
235 Mongolia 27629 C 7 7
236 Mongolia 27630 C 7 7
237 Mongolia 27631 A 7 7
238 Mongolia 27632 G 7 7
239 Mongolia 27633 A 7 7
240 Mongolia 27634 T 7 7
241 Mongolia 27635 C 7 7
242 Mongolia 27636 A 7 7
243 Mongolia 27637 G 7 7
244 Mongolia 27638 T 7 7
245 Mongolia 27639 T 7 7
246 Mongolia 27640 T 7 7
247 Mongolia 27641 C 7 7
248 Mongolia 27642 A 7 7
249 Mongolia 27643 C 7 7
250 Mongolia 27644 C 7 7
251 Mongolia 27645 T 7 7
252 Mongolia 27646 A 7 7
253 Mongolia 27647 A 7 7
254 Mongolia 27648 A 7 7
255 Mongolia 27649 C 7 7
256 Mongolia 27650 T 7 7
257 Mongolia 27651 G 7 7
258 Mongolia 27652 T 7 7
259 Mongolia 27653 T 7 7
260 Mongolia 27654 C 7 7
261 Mongolia 27655 A 7 7
262 Mongolia 27656 T 7 7
263 Mongolia 27657 C 7 7
264 Mongolia 27658 A 7 7
265 Mongolia 27659 G 7 7
266 Mongolia 27660 A 7 7
267 Mongolia 27661 C 7 7
268 Mongolia 27662 A 7 7
269 Mongolia 27663 A 7 7
270 Mongolia 27664 G 7 7
271 Mongolia 27665 A 7 7
272 Mongolia 27666 G 7 7
273 Mongolia 27667 G 7 7
274 Mongolia 27668 A 7 7
275 Mongolia 27669 A 7 7
276 Mongolia 27670 G 7 7
277 Mongolia 27671 T 7 7
278 Mongolia 27672 T 7 7
279 Mongolia 27673 C 7 7
280 Mongolia 27674 A 7 7
281 Mongolia 27675 A 7 7
282 Mongolia 27676 G 7 7
283 Mongolia 27677 A 7 7
284 Mongolia 27678 A 7 7
285 Mongolia 27679 C 7 7
286 Mongolia 27680 T 7 7
287 Mongolia 27681 T 7 7
288 Mongolia 27682 T 7 7
289 Mongolia 27683 A 7 7
290 Mongolia 27684 C 7 7
291 Mongolia 27685 T 7 7
292 Mongolia 27686 C 7 7
293 Mongolia 27687 T 7 7
294 Mongolia 27688 C 7 7
295 Mongolia 27689 C 7 7
296 Mongolia 27690 A 7 7
297 Mongolia 27691 A 7 7
298 Mongolia 27692 T 7 7
299 Mongolia 27693 T 7 7
300 Mongolia 27694 T 7 7
301 Mongolia 27695 T 7 7
302 Mongolia 27696 T 7 7
303 Mongolia 27697 C 7 7
304 Mongolia 27698 T 7 7
305 Mongolia 27699 T 7 7
306 Mongolia 27700 A 7 7
307 Mongolia 27701 T 7 7
308 Mongolia 27702 T 7 7
309 Mongolia 27703 G 7 7
310 Mongolia 27704 T 7 7
311 Mongolia 27705 T 7 7
312 Mongolia 27706 G 7 7
313 Mongolia 27707 C 7 7
314 Mongolia 27708 G 7 7
315 Mongolia 27709 G 7 7
316 Mongolia 27710 C 7 7
317 Mongolia 27711 A 7 7
318 Mongolia 27712 A 7 7
319 Mongolia 27713 T 7 7
320 Mongolia 27714 A 7 7
321 Mongolia 27715 G 7 7
322 Mongolia 27716 T 7 7
323 Mongolia 27717 G 7 7
324 Mongolia 27718 T 7 7
325 Mongolia 27719 T 7 7
326 Mongolia 27720 T 7 7
327 Mongolia 27721 A 7 7
328 Mongolia 27722 T 7 7
329 Mongolia 27723 A 7 7
330 Mongolia 27724 A 7 7
331 Mongolia 27725 C 7 7
332 Mongolia 27726 A 7 7
333 Mongolia 27727 C 7 7
334 Mongolia 27728 T 7 7
335 Mongolia 27729 T 7 7
336 Mongolia 27730 T 7 7
337 Mongolia 27731 G 7 7
338 Mongolia 27732 C 7 7
339 Mongolia 27733 T 7 7
340 Mongolia 27734 T 7 7
341 Mongolia 27735 C 7 7
342 Mongolia 27736 A 7 7
343 Mongolia 27737 C 7 7
344 Mongolia 27738 A 7 7
345 Mongolia 27739 C 7 7
346 Mongolia 27740 T 7 7
347 Mongolia 27741 C 7 7
348 Mongolia 27742 A 7 7
349 Mongolia 27743 A 7 7
350 Mongolia 27744 A 7 7
351 Mongolia 27745 A 7 7
352 Mongolia 27746 G 7 7
353 Mongolia 27747 A 7 7
354 Mongolia 27748 A 7 7
355 Mongolia 27749 A 7 7
356 Mongolia 27750 G 7 7
357 Mongolia 27751 A 7 7
358 Mongolia 27752 C 7 7
359 Mongolia 27753 A 7 7
360 Mongolia 27754 G 7 7
361 Mongolia 27755 A 7 7
362 Mongolia 27756 A 7 7
363 Mongolia 27757 T 7 7
364 Mongolia 27758 G 7 7
365 Mongolia 27759 A 7 7