National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Moldova 27394 A 8 8
1 Moldova 27395 T 8 8
2 Moldova 27396 G 8 8
3 Moldova 27397 A 8 8
4 Moldova 27398 A 8 8
5 Moldova 27399 A 8 8
6 Moldova 27400 A 8 8
7 Moldova 27401 T 8 8
8 Moldova 27402 T 8 8
9 Moldova 27403 A 8 8
10 Moldova 27404 T 8 8
11 Moldova 27405 T 8 8
12 Moldova 27406 C 8 8
13 Moldova 27407 T 8 8
14 Moldova 27408 T 8 8
15 Moldova 27409 T 8 8
16 Moldova 27410 T 8 8
17 Moldova 27411 C 8 8
18 Moldova 27412 T 8 8
19 Moldova 27413 T 8 8
20 Moldova 27414 G 8 8
21 Moldova 27415 G 8 8
22 Moldova 27416 C 8 8
23 Moldova 27417 A 8 8
24 Moldova 27418 C 8 8
25 Moldova 27419 T 8 8
26 Moldova 27420 G 8 8
27 Moldova 27421 A 8 8
28 Moldova 27422 T 8 8
29 Moldova 27423 A 8 8
30 Moldova 27424 A 8 8
31 Moldova 27425 C 8 8
32 Moldova 27426 A 8 8
33 Moldova 27427 C 8 8
34 Moldova 27428 T 8 8
35 Moldova 27429 C 8 8
36 Moldova 27430 G 8 8
37 Moldova 27431 C 8 8
38 Moldova 27432 T 8 8
39 Moldova 27433 A 8 8
40 Moldova 27434 C 8 8
41 Moldova 27435 T 8 8
42 Moldova 27436 T 8 8
43 Moldova 27437 G 8 8
44 Moldova 27438 T 8 8
45 Moldova 27439 G 8 8
46 Moldova 27440 A 8 8
47 Moldova 27441 G 8 8
48 Moldova 27442 C 8 8
49 Moldova 27443 T 8 8
50 Moldova 27444 T 8 8
51 Moldova 27445 T 8 8
52 Moldova 27446 A 8 8
53 Moldova 27447 T 8 8
54 Moldova 27448 C 8 8
55 Moldova 27449 A 8 8
56 Moldova 27450 C 8 8
57 Moldova 27451 T 8 8
58 Moldova 27452 A 8 8
59 Moldova 27453 C 8 8
60 Moldova 27454 C 8 8
61 Moldova 27455 A 8 8
62 Moldova 27456 A 8 8
63 Moldova 27457 G 8 8
64 Moldova 27458 A 8 8
65 Moldova 27459 G 8 8
66 Moldova 27460 T 8 8
67 Moldova 27461 G 8 8
68 Moldova 27462 T 8 8
69 Moldova 27463 G 8 8
70 Moldova 27464 T 8 8
71 Moldova 27465 T 8 8
72 Moldova 27466 A 8 8
73 Moldova 27467 G 8 8
74 Moldova 27468 A 8 8
75 Moldova 27469 G 8 8
76 Moldova 27470 G 8 8
77 Moldova 27471 T 8 8
78 Moldova 27472 A 8 8
79 Moldova 27473 C 8 8
80 Moldova 27474 A 8 8
81 Moldova 27475 A 8 8
82 Moldova 27476 C 8 8
83 Moldova 27477 A 8 8
84 Moldova 27478 G 8 8
85 Moldova 27479 T 8 8
86 Moldova 27480 A 8 8
87 Moldova 27481 C 8 8
88 Moldova 27482 T 8 8
89 Moldova 27483 T 8 8
90 Moldova 27484 T 8 8
91 Moldova 27485 T 8 8
92 Moldova 27486 A 8 8
93 Moldova 27487 A 8 8
94 Moldova 27488 A 8 8
95 Moldova 27489 A 8 8
96 Moldova 27490 G 8 8
97 Moldova 27491 A 8 8
98 Moldova 27492 A 8 8
99 Moldova 27493 C 8 8
100 Moldova 27494 C 8 8
101 Moldova 27495 T 8 8
102 Moldova 27496 T 8 8
103 Moldova 27497 G 8 8
104 Moldova 27498 C 8 8
105 Moldova 27499 T 8 8
106 Moldova 27500 C 8 8
107 Moldova 27501 T 8 8
108 Moldova 27502 T 8 8
109 Moldova 27503 C 8 8
110 Moldova 27504 T 8 8
111 Moldova 27505 G 8 8
112 Moldova 27506 G 8 8
113 Moldova 27507 A 8 8
114 Moldova 27508 A 8 8
115 Moldova 27509 C 8 8
116 Moldova 27510 A 8 8
117 Moldova 27511 T 8 8
118 Moldova 27512 A 8 8
119 Moldova 27513 C 8 8
120 Moldova 27514 G 8 8
121 Moldova 27515 A 8 8
122 Moldova 27516 G 8 8
123 Moldova 27517 G 8 8
124 Moldova 27518 G 8 8
125 Moldova 27519 C 8 8
126 Moldova 27520 A 8 8
127 Moldova 27521 A 8 8
128 Moldova 27522 T 8 8
129 Moldova 27523 T 8 8
130 Moldova 27524 C 8 8
131 Moldova 27525 A 8 8
132 Moldova 27526 C 8 8
133 Moldova 27527 C 8 8
134 Moldova 27528 A 8 8
135 Moldova 27529 T 8 8
136 Moldova 27530 T 8 8
137 Moldova 27531 T 8 8
138 Moldova 27532 C 8 8
139 Moldova 27533 A 8 8
140 Moldova 27534 T 8 8
141 Moldova 27535 C 8 8
142 Moldova 27536 C 8 8
143 Moldova 27537 T 8 8
144 Moldova 27538 C 8 8
145 Moldova 27539 T 8 8
146 Moldova 27540 A 8 8
147 Moldova 27541 G 8 8
148 Moldova 27542 C 8 8
149 Moldova 27543 T 8 8
150 Moldova 27544 G 8 8
151 Moldova 27545 A 8 8
152 Moldova 27546 T 8 8
153 Moldova 27547 A 8 8
154 Moldova 27548 A 8 8
155 Moldova 27549 C 8 8
156 Moldova 27550 A 8 8
157 Moldova 27551 A 8 8
158 Moldova 27552 A 8 8
159 Moldova 27553 T 8 8
160 Moldova 27554 T 8 8
161 Moldova 27555 T 8 8
162 Moldova 27556 G 8 8
163 Moldova 27557 C 8 8
164 Moldova 27558 A 8 8
165 Moldova 27559 C 8 8
166 Moldova 27560 T 8 8
167 Moldova 27561 G 8 8
168 Moldova 27562 A 8 8
169 Moldova 27563 C 8 8
170 Moldova 27564 T 8 8
171 Moldova 27565 T 8 8
172 Moldova 27566 G 8 8
173 Moldova 27567 C 8 8
174 Moldova 27568 T 8 8
175 Moldova 27569 T 8 8
176 Moldova 27570 T 8 8
177 Moldova 27571 A 8 8
178 Moldova 27572 G 8 8
179 Moldova 27573 C 8 8
180 Moldova 27574 A 8 8
181 Moldova 27575 C 8 8
182 Moldova 27576 T 8 8
183 Moldova 27577 C 8 8
184 Moldova 27578 A 8 8
185 Moldova 27579 A 8 8
186 Moldova 27580 T 8 8
187 Moldova 27581 T 8 8
188 Moldova 27582 T 8 8
189 Moldova 27583 G 8 8
190 Moldova 27584 C 8 8
191 Moldova 27585 T 8 8
192 Moldova 27586 T 8 8
193 Moldova 27587 T 8 8
194 Moldova 27588 T 8 8
195 Moldova 27589 G 8 8
196 Moldova 27590 C 8 8
197 Moldova 27591 T 8 8
198 Moldova 27592 T 8 8
199 Moldova 27593 G 8 8
200 Moldova 27594 T 8 8
201 Moldova 27595 C 8 8
202 Moldova 27596 C 8 8
203 Moldova 27597 T 8 8
204 Moldova 27598 G 8 8
205 Moldova 27599 A 8 8
206 Moldova 27600 C 8 8
207 Moldova 27601 G 8 8
208 Moldova 27602 G 8 8
209 Moldova 27603 C 8 8
210 Moldova 27604 G 8 8
211 Moldova 27605 T 8 8
212 Moldova 27606 A 8 8
213 Moldova 27607 A 8 8
214 Moldova 27608 A 8 8
215 Moldova 27609 A 8 8
216 Moldova 27610 C 8 8
217 Moldova 27611 A 8 8
218 Moldova 27612 C 8 8
219 Moldova 27613 G 8 8
220 Moldova 27614 T 8 8
221 Moldova 27615 C 8 8
222 Moldova 27616 T 8 8
223 Moldova 27617 A 8 8
224 Moldova 27618 T 8 8
225 Moldova 27619 C 8 8
226 Moldova 27620 A 8 8
227 Moldova 27621 G 8 8
228 Moldova 27622 T 8 8
229 Moldova 27623 T 8 8
230 Moldova 27624 A 8 8
231 Moldova 27625 C 8 8
232 Moldova 27626 G 8 8
233 Moldova 27627 T 8 8
234 Moldova 27628 G 8 8
235 Moldova 27629 C 8 8
236 Moldova 27630 C 8 8
237 Moldova 27631 A 8 8
238 Moldova 27632 G 8 8
239 Moldova 27633 A 8 8
240 Moldova 27634 T 8 8
241 Moldova 27635 C 8 8
242 Moldova 27636 A 8 8
243 Moldova 27637 G 8 8
244 Moldova 27638 T 8 8
245 Moldova 27639 T 8 8
246 Moldova 27640 T 8 8
247 Moldova 27641 C 8 8
248 Moldova 27642 A 8 8
249 Moldova 27643 C 8 8
250 Moldova 27644 C 8 8
251 Moldova 27645 T 8 8
252 Moldova 27646 A 8 8
253 Moldova 27647 A 8 8
254 Moldova 27648 A 8 8
255 Moldova 27649 C 8 8
256 Moldova 27650 T 8 8
257 Moldova 27651 G 8 8
258 Moldova 27652 T 8 8
259 Moldova 27653 T 8 8
260 Moldova 27654 C 8 8
261 Moldova 27655 A 8 8
262 Moldova 27656 T 8 8
263 Moldova 27657 C 8 8
264 Moldova 27658 A 8 8
265 Moldova 27659 G 8 8
266 Moldova 27660 A 8 8
267 Moldova 27661 C 8 8
268 Moldova 27662 A 8 8
269 Moldova 27663 A 8 8
270 Moldova 27664 G 8 8
271 Moldova 27665 A 8 8
272 Moldova 27666 G 8 8
273 Moldova 27667 G 8 8
274 Moldova 27668 A 8 8
275 Moldova 27669 A 8 8
276 Moldova 27670 G 8 8
277 Moldova 27671 T 8 8
278 Moldova 27672 T 8 8
279 Moldova 27673 C 8 8
280 Moldova 27674 A 8 8
281 Moldova 27675 A 8 8
282 Moldova 27676 G 8 7
283 Moldova 27677 A 8 8
284 Moldova 27678 A 8 8
285 Moldova 27679 C 8 8
286 Moldova 27680 T 8 8
287 Moldova 27681 T 8 8
288 Moldova 27682 T 8 8
289 Moldova 27683 A 8 8
290 Moldova 27684 C 8 8
291 Moldova 27685 T 8 8
292 Moldova 27686 C 8 8
293 Moldova 27687 T 8 8
294 Moldova 27688 C 8 8
295 Moldova 27689 C 8 8
296 Moldova 27690 A 8 8
297 Moldova 27691 A 8 8
298 Moldova 27692 T 8 8
299 Moldova 27693 T 8 8
300 Moldova 27694 T 8 8
301 Moldova 27695 T 8 8
302 Moldova 27696 T 8 8
303 Moldova 27697 C 8 8
304 Moldova 27698 T 8 8
305 Moldova 27699 T 8 8
306 Moldova 27700 A 8 8
307 Moldova 27701 T 8 8
308 Moldova 27702 T 8 8
309 Moldova 27703 G 8 8
310 Moldova 27704 T 8 8
311 Moldova 27705 T 8 8
312 Moldova 27706 G 8 8
313 Moldova 27707 C 8 8
314 Moldova 27708 G 8 8
315 Moldova 27709 G 8 8
316 Moldova 27710 C 8 8
317 Moldova 27711 A 8 8
318 Moldova 27712 A 8 8
319 Moldova 27713 T 8 8
320 Moldova 27714 A 8 8
321 Moldova 27715 G 8 8
322 Moldova 27716 T 8 8
323 Moldova 27717 G 8 8
324 Moldova 27718 T 8 8
325 Moldova 27719 T 8 8
326 Moldova 27720 T 8 8
327 Moldova 27721 A 8 8
328 Moldova 27722 T 8 8
329 Moldova 27723 A 8 8
330 Moldova 27724 A 8 8
331 Moldova 27725 C 8 8
332 Moldova 27726 A 8 8
333 Moldova 27727 C 8 8
334 Moldova 27728 T 8 8
335 Moldova 27729 T 8 8
336 Moldova 27730 T 8 8
337 Moldova 27731 G 8 8
338 Moldova 27732 C 8 8
339 Moldova 27733 T 8 8
340 Moldova 27734 T 8 8
341 Moldova 27735 C 8 8
342 Moldova 27736 A 8 8
343 Moldova 27737 C 8 8
344 Moldova 27738 A 8 8
345 Moldova 27739 C 8 8
346 Moldova 27740 T 8 8
347 Moldova 27741 C 8 8
348 Moldova 27742 A 8 8
349 Moldova 27743 A 8 8
350 Moldova 27744 A 8 8
351 Moldova 27745 A 8 8
352 Moldova 27746 G 8 8
353 Moldova 27747 A 8 8
354 Moldova 27748 A 8 8
355 Moldova 27749 A 8 8
356 Moldova 27750 G 8 8
357 Moldova 27751 A 8 8
358 Moldova 27752 C 8 8
359 Moldova 27753 A 8 8
360 Moldova 27754 G 8 8
361 Moldova 27755 A 8 8
362 Moldova 27756 A 8 8
363 Moldova 27757 T 8 8
364 Moldova 27758 G 8 8
365 Moldova 27759 A 8 8