National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                               1      
Q     15                                      
R     15                                      
S     21                                      
T     30               1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 27394 A 235 235
1 Lithuania 27395 T 235 235
2 Lithuania 27396 G 235 235
3 Lithuania 27397 A 235 235
4 Lithuania 27398 A 235 235
5 Lithuania 27399 A 235 235
6 Lithuania 27400 A 235 235
7 Lithuania 27401 T 235 235
8 Lithuania 27402 T 235 235
9 Lithuania 27403 A 235 235
10 Lithuania 27404 T 235 235
11 Lithuania 27405 T 235 235
12 Lithuania 27406 C 235 235
13 Lithuania 27407 T 235 235
14 Lithuania 27408 T 235 235
15 Lithuania 27409 T 235 235
16 Lithuania 27410 T 235 235
17 Lithuania 27411 C 235 235
18 Lithuania 27412 T 235 235
19 Lithuania 27413 T 235 235
20 Lithuania 27414 G 235 235
21 Lithuania 27415 G 235 235
22 Lithuania 27416 C 235 235
23 Lithuania 27417 A 235 235
24 Lithuania 27418 C 235 235
25 Lithuania 27419 T 235 235
26 Lithuania 27420 G 235 235
27 Lithuania 27421 A 235 235
28 Lithuania 27422 T 235 235
29 Lithuania 27423 A 235 235
30 Lithuania 27424 A 235 235
31 Lithuania 27425 C 235 235
32 Lithuania 27426 A 235 235
33 Lithuania 27427 C 235 235
34 Lithuania 27428 T 235 235
35 Lithuania 27429 C 235 235
36 Lithuania 27430 G 235 235
37 Lithuania 27431 C 235 235
38 Lithuania 27432 T 235 235
39 Lithuania 27433 A 235 235
40 Lithuania 27434 C 235 235
41 Lithuania 27435 T 235 235
42 Lithuania 27436 T 235 235
43 Lithuania 27437 G 235 235
44 Lithuania 27438 T 235 235
45 Lithuania 27439 G 235 235
46 Lithuania 27440 A 235 235
47 Lithuania 27441 G 235 235
48 Lithuania 27442 C 235 235
49 Lithuania 27443 T 235 235
50 Lithuania 27444 T 235 235
51 Lithuania 27445 T 235 235
52 Lithuania 27446 A 235 235
53 Lithuania 27447 T 235 235
54 Lithuania 27448 C 235 235
55 Lithuania 27449 A 235 235
56 Lithuania 27450 C 235 235
57 Lithuania 27451 T 235 235
58 Lithuania 27452 A 235 235
59 Lithuania 27453 C 235 235
60 Lithuania 27454 C 235 235
61 Lithuania 27455 A 235 235
62 Lithuania 27456 A 235 235
63 Lithuania 27457 G 235 235
64 Lithuania 27458 A 235 235
65 Lithuania 27459 G 235 235
66 Lithuania 27460 T 235 235
67 Lithuania 27461 G 235 235
68 Lithuania 27462 T 235 235
69 Lithuania 27463 G 235 235
70 Lithuania 27464 T 235 235
71 Lithuania 27465 T 235 235
72 Lithuania 27466 A 235 235
73 Lithuania 27467 G 235 235
74 Lithuania 27468 A 235 235
75 Lithuania 27469 G 235 235
76 Lithuania 27470 G 235 235
77 Lithuania 27471 T 235 235
78 Lithuania 27472 A 235 235
79 Lithuania 27473 C 235 235
80 Lithuania 27474 A 235 235
81 Lithuania 27475 A 235 235
82 Lithuania 27476 C T 235 223 Thr28Ile
83 Lithuania 27477 A 235 235
84 Lithuania 27478 G 235 235
85 Lithuania 27479 T 235 235
86 Lithuania 27480 A 235 235
87 Lithuania 27481 C 235 235
88 Lithuania 27482 T 235 235
89 Lithuania 27483 T 235 235
90 Lithuania 27484 T 235 235
91 Lithuania 27485 T 235 235
92 Lithuania 27486 A 235 235
93 Lithuania 27487 A 235 235
94 Lithuania 27488 A 235 235
95 Lithuania 27489 A 235 235
96 Lithuania 27490 G 235 235
97 Lithuania 27491 A 235 235
98 Lithuania 27492 A 235 235
99 Lithuania 27493 C 235 235
100 Lithuania 27494 C 235 235
101 Lithuania 27495 T 235 235
102 Lithuania 27496 T 235 235
103 Lithuania 27497 G 235 235
104 Lithuania 27498 C 235 235
105 Lithuania 27499 T 235 235
106 Lithuania 27500 C 235 235
107 Lithuania 27501 T 235 235
108 Lithuania 27502 T 235 235
109 Lithuania 27503 C 235 235
110 Lithuania 27504 T 235 235
111 Lithuania 27505 G 235 235
112 Lithuania 27506 G 235 235
113 Lithuania 27507 A 235 235
114 Lithuania 27508 A 235 235
115 Lithuania 27509 C 235 235
116 Lithuania 27510 A 235 235
117 Lithuania 27511 T 235 235
118 Lithuania 27512 A 235 235
119 Lithuania 27513 C 235 235
120 Lithuania 27514 G 235 235
121 Lithuania 27515 A 235 235
122 Lithuania 27516 G 235 235
123 Lithuania 27517 G 235 235
124 Lithuania 27518 G 235 235
125 Lithuania 27519 C 235 235
126 Lithuania 27520 A 235 235
127 Lithuania 27521 A 235 235
128 Lithuania 27522 T 235 235
129 Lithuania 27523 T 235 235
130 Lithuania 27524 C 235 235
131 Lithuania 27525 A 235 235
132 Lithuania 27526 C 235 235
133 Lithuania 27527 C 235 235
134 Lithuania 27528 A 235 235
135 Lithuania 27529 T 235 235
136 Lithuania 27530 T 235 235
137 Lithuania 27531 T 235 235
138 Lithuania 27532 C 235 235
139 Lithuania 27533 A 235 235
140 Lithuania 27534 T 235 235
141 Lithuania 27535 C 235 235
142 Lithuania 27536 C 235 235
143 Lithuania 27537 T 235 235
144 Lithuania 27538 C 235 235
145 Lithuania 27539 T 235 235
146 Lithuania 27540 A 235 235
147 Lithuania 27541 G 235 235
148 Lithuania 27542 C 235 235
149 Lithuania 27543 T 235 235
150 Lithuania 27544 G 235 235
151 Lithuania 27545 A 235 235
152 Lithuania 27546 T 235 235
153 Lithuania 27547 A 235 235
154 Lithuania 27548 A 235 235
155 Lithuania 27549 C 235 235
156 Lithuania 27550 A 235 235
157 Lithuania 27551 A 235 235
158 Lithuania 27552 A 235 235
159 Lithuania 27553 T 235 235
160 Lithuania 27554 T 235 235
161 Lithuania 27555 T 235 235
162 Lithuania 27556 G 235 235
163 Lithuania 27557 C 235 235
164 Lithuania 27558 A 235 235
165 Lithuania 27559 C 235 235
166 Lithuania 27560 T 235 235
167 Lithuania 27561 G 235 235
168 Lithuania 27562 A 235 235
169 Lithuania 27563 C 235 235
170 Lithuania 27564 T 235 235
171 Lithuania 27565 T 235 235
172 Lithuania 27566 G 235 235
173 Lithuania 27567 C 235 235
174 Lithuania 27568 T 235 235
175 Lithuania 27569 T 235 235
176 Lithuania 27570 T 235 235
177 Lithuania 27571 A 235 235
178 Lithuania 27572 G 235 235
179 Lithuania 27573 C 235 235
180 Lithuania 27574 A 235 235
181 Lithuania 27575 C 235 235
182 Lithuania 27576 T 235 235
183 Lithuania 27577 C 235 235
184 Lithuania 27578 A 235 235
185 Lithuania 27579 A 235 235
186 Lithuania 27580 T 235 235
187 Lithuania 27581 T 235 235
188 Lithuania 27582 T 235 235
189 Lithuania 27583 G 235 235
190 Lithuania 27584 C 235 235
191 Lithuania 27585 T 235 235
192 Lithuania 27586 T 235 235
193 Lithuania 27587 T 235 235
194 Lithuania 27588 T 235 235
195 Lithuania 27589 G 235 235
196 Lithuania 27590 C 235 235
197 Lithuania 27591 T 235 235
198 Lithuania 27592 T 235 235
199 Lithuania 27593 G 235 235
200 Lithuania 27594 T 235 235
201 Lithuania 27595 C 235 235
202 Lithuania 27596 C 235 235
203 Lithuania 27597 T 235 235
204 Lithuania 27598 G 235 235
205 Lithuania 27599 A 235 235
206 Lithuania 27600 C 235 235
207 Lithuania 27601 G 235 235
208 Lithuania 27602 G 235 235
209 Lithuania 27603 C 235 235
210 Lithuania 27604 G 235 235
211 Lithuania 27605 T 235 235
212 Lithuania 27606 A 235 235
213 Lithuania 27607 A 235 235
214 Lithuania 27608 A 235 235
215 Lithuania 27609 A 235 235
216 Lithuania 27610 C 235 235
217 Lithuania 27611 A 235 235
218 Lithuania 27612 C 235 235
219 Lithuania 27613 G 235 235
220 Lithuania 27614 T 235 235
221 Lithuania 27615 C 235 235
222 Lithuania 27616 T 235 235
223 Lithuania 27617 A 235 235
224 Lithuania 27618 T 235 235
225 Lithuania 27619 C 235 235
226 Lithuania 27620 A 235 235
227 Lithuania 27621 G 235 235
228 Lithuania 27622 T 235 235
229 Lithuania 27623 T 235 235
230 Lithuania 27624 A 235 235
231 Lithuania 27625 C 235 235
232 Lithuania 27626 G 235 235
233 Lithuania 27627 T 235 235
234 Lithuania 27628 G 235 235
235 Lithuania 27629 C 235 235
236 Lithuania 27630 C 235 235
237 Lithuania 27631 A 235 235
238 Lithuania 27632 G 235 235
239 Lithuania 27633 A 235 235
240 Lithuania 27634 T 235 235
241 Lithuania 27635 C 235 235
242 Lithuania 27636 A 235 235
243 Lithuania 27637 G 235 235
244 Lithuania 27638 T 235 235
245 Lithuania 27639 T 235 235
246 Lithuania 27640 T 235 235
247 Lithuania 27641 C 235 235
248 Lithuania 27642 A 235 235
249 Lithuania 27643 C 235 235
250 Lithuania 27644 C 235 235
251 Lithuania 27645 T 235 235
252 Lithuania 27646 A 235 235
253 Lithuania 27647 A 235 235
254 Lithuania 27648 A 235 235
255 Lithuania 27649 C 235 235
256 Lithuania 27650 T 235 235
257 Lithuania 27651 G 235 235
258 Lithuania 27652 T 235 235
259 Lithuania 27653 T 235 235
260 Lithuania 27654 C 235 235
261 Lithuania 27655 A 235 235
262 Lithuania 27656 T 235 235
263 Lithuania 27657 C 235 235
264 Lithuania 27658 A 235 235
265 Lithuania 27659 G 235 235
266 Lithuania 27660 A 235 235
267 Lithuania 27661 C 235 235
268 Lithuania 27662 A 235 235
269 Lithuania 27663 A 235 235
270 Lithuania 27664 G 235 235
271 Lithuania 27665 A 235 235
272 Lithuania 27666 G 235 235
273 Lithuania 27667 G 235 235
274 Lithuania 27668 A 235 235
275 Lithuania 27669 A 235 235
276 Lithuania 27670 G 235 235
277 Lithuania 27671 T 235 235
278 Lithuania 27672 T 235 235
279 Lithuania 27673 C 235 235
280 Lithuania 27674 A 235 235
281 Lithuania 27675 A 235 235
282 Lithuania 27676 G 235 235
283 Lithuania 27677 A 235 235
284 Lithuania 27678 A 235 235
285 Lithuania 27679 C 235 235
286 Lithuania 27680 T 235 235
287 Lithuania 27681 T 235 235
288 Lithuania 27682 T 235 235
289 Lithuania 27683 A 235 235
290 Lithuania 27684 C 235 235
291 Lithuania 27685 T 235 235
292 Lithuania 27686 C 235 235
293 Lithuania 27687 T 235 235
294 Lithuania 27688 C T 235 234 Pro99Ser
295 Lithuania 27689 C 235 235
296 Lithuania 27690 A 235 235
297 Lithuania 27691 A 235 235
298 Lithuania 27692 T 235 235
299 Lithuania 27693 T 235 235
300 Lithuania 27694 T 235 235
301 Lithuania 27695 T 235 235
302 Lithuania 27696 T 235 235
303 Lithuania 27697 C 235 235
304 Lithuania 27698 T 235 235
305 Lithuania 27699 T 235 235
306 Lithuania 27700 A 235 235
307 Lithuania 27701 T 235 235
308 Lithuania 27702 T 235 235
309 Lithuania 27703 G 235 235
310 Lithuania 27704 T 235 235
311 Lithuania 27705 T 235 235
312 Lithuania 27706 G 235 235
313 Lithuania 27707 C 235 235
314 Lithuania 27708 G 235 235
315 Lithuania 27709 G 235 235
316 Lithuania 27710 C 235 235
317 Lithuania 27711 A 235 235
318 Lithuania 27712 A 235 235
319 Lithuania 27713 T 235 235
320 Lithuania 27714 A 235 235
321 Lithuania 27715 G 235 235
322 Lithuania 27716 T 235 235
323 Lithuania 27717 G 235 235
324 Lithuania 27718 T 235 235
325 Lithuania 27719 T 235 235
326 Lithuania 27720 T 235 235
327 Lithuania 27721 A 235 235
328 Lithuania 27722 T 235 235
329 Lithuania 27723 A 235 235
330 Lithuania 27724 A 235 235
331 Lithuania 27725 C 235 235
332 Lithuania 27726 A 235 235
333 Lithuania 27727 C 235 235
334 Lithuania 27728 T 235 235
335 Lithuania 27729 T 235 235
336 Lithuania 27730 T 235 235
337 Lithuania 27731 G 235 235
338 Lithuania 27732 C 235 235
339 Lithuania 27733 T 235 235
340 Lithuania 27734 T 235 235
341 Lithuania 27735 C 235 235
342 Lithuania 27736 A 235 235
343 Lithuania 27737 C 235 235
344 Lithuania 27738 A 235 235
345 Lithuania 27739 C 235 235
346 Lithuania 27740 T 235 235
347 Lithuania 27741 C 235 235
348 Lithuania 27742 A 235 235
349 Lithuania 27743 A 235 235
350 Lithuania 27744 A 235 235
351 Lithuania 27745 A 235 235
352 Lithuania 27746 G 235 235
353 Lithuania 27747 A 235 235
354 Lithuania 27748 A 235 235
355 Lithuania 27749 A 235 235
356 Lithuania 27750 G 235 235
357 Lithuania 27751 A 235 235
358 Lithuania 27752 C 235 235
359 Lithuania 27753 A 235 235
360 Lithuania 27754 G 235 235
361 Lithuania 27755 A 235 235
362 Lithuania 27756 A 235 235
363 Lithuania 27757 T 235 235
364 Lithuania 27758 G 234 234
365 Lithuania 27759 A 234 234