National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                               1      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 27394 A 23 23
1 Lebanon 27395 T 23 23
2 Lebanon 27396 G 23 23
3 Lebanon 27397 A 23 23
4 Lebanon 27398 A 23 23
5 Lebanon 27399 A 23 23
6 Lebanon 27400 A 23 23
7 Lebanon 27401 T 23 23
8 Lebanon 27402 T 23 23
9 Lebanon 27403 A 23 23
10 Lebanon 27404 T 23 23
11 Lebanon 27405 T 23 23
12 Lebanon 27406 C 23 23
13 Lebanon 27407 T 23 23
14 Lebanon 27408 T 23 23
15 Lebanon 27409 T 23 23
16 Lebanon 27410 T 23 23
17 Lebanon 27411 C 23 23
18 Lebanon 27412 T 23 23
19 Lebanon 27413 T 23 23
20 Lebanon 27414 G 23 23
21 Lebanon 27415 G 23 23
22 Lebanon 27416 C 23 23
23 Lebanon 27417 A 23 23
24 Lebanon 27418 C 23 23
25 Lebanon 27419 T 23 23
26 Lebanon 27420 G 23 23
27 Lebanon 27421 A 23 23
28 Lebanon 27422 T 23 23
29 Lebanon 27423 A 23 23
30 Lebanon 27424 A 23 23
31 Lebanon 27425 C 23 23
32 Lebanon 27426 A 23 23
33 Lebanon 27427 C 23 23
34 Lebanon 27428 T 23 23
35 Lebanon 27429 C 23 23
36 Lebanon 27430 G 23 23
37 Lebanon 27431 C 23 23
38 Lebanon 27432 T 23 23
39 Lebanon 27433 A 23 23
40 Lebanon 27434 C 23 23
41 Lebanon 27435 T 23 23
42 Lebanon 27436 T 23 23
43 Lebanon 27437 G 23 23
44 Lebanon 27438 T 23 23
45 Lebanon 27439 G 23 23
46 Lebanon 27440 A 23 23
47 Lebanon 27441 G 23 23
48 Lebanon 27442 C 23 23
49 Lebanon 27443 T 23 23
50 Lebanon 27444 T 23 23
51 Lebanon 27445 T 23 23
52 Lebanon 27446 A 23 23
53 Lebanon 27447 T 23 23
54 Lebanon 27448 C 23 23
55 Lebanon 27449 A 23 23
56 Lebanon 27450 C 23 23
57 Lebanon 27451 T 23 23
58 Lebanon 27452 A 23 23
59 Lebanon 27453 C 23 23
60 Lebanon 27454 C 23 23
61 Lebanon 27455 A 23 23
62 Lebanon 27456 A 23 23
63 Lebanon 27457 G 23 23
64 Lebanon 27458 A 23 23
65 Lebanon 27459 G 23 23
66 Lebanon 27460 T 23 23
67 Lebanon 27461 G 23 23
68 Lebanon 27462 T 23 23
69 Lebanon 27463 G 23 23
70 Lebanon 27464 T 23 23
71 Lebanon 27465 T 23 23
72 Lebanon 27466 A 23 23
73 Lebanon 27467 G 23 23
74 Lebanon 27468 A 23 23
75 Lebanon 27469 G 23 23
76 Lebanon 27470 G 23 23
77 Lebanon 27471 T 23 23
78 Lebanon 27472 A 23 23
79 Lebanon 27473 C 23 23
80 Lebanon 27474 A 23 23
81 Lebanon 27475 A 23 23
82 Lebanon 27476 C 23 23
83 Lebanon 27477 A 23 23
84 Lebanon 27478 G 23 23
85 Lebanon 27479 T 23 23
86 Lebanon 27480 A 23 23
87 Lebanon 27481 C 23 23
88 Lebanon 27482 T 23 23
89 Lebanon 27483 T 23 23
90 Lebanon 27484 T 23 23
91 Lebanon 27485 T 23 23
92 Lebanon 27486 A 23 23
93 Lebanon 27487 A 23 23
94 Lebanon 27488 A 23 23
95 Lebanon 27489 A 23 23
96 Lebanon 27490 G 23 23
97 Lebanon 27491 A 23 23
98 Lebanon 27492 A 23 23
99 Lebanon 27493 C 23 23
100 Lebanon 27494 C 23 23
101 Lebanon 27495 T 23 23
102 Lebanon 27496 T 23 23
103 Lebanon 27497 G 23 23
104 Lebanon 27498 C 23 23
105 Lebanon 27499 T 23 23
106 Lebanon 27500 C 23 23
107 Lebanon 27501 T 23 23
108 Lebanon 27502 T 23 23
109 Lebanon 27503 C 23 23
110 Lebanon 27504 T 23 23
111 Lebanon 27505 G 23 23
112 Lebanon 27506 G 23 23
113 Lebanon 27507 A 23 23
114 Lebanon 27508 A 23 23
115 Lebanon 27509 C 23 23
116 Lebanon 27510 A 23 23
117 Lebanon 27511 T 23 23
118 Lebanon 27512 A 15 15
119 Lebanon 27513 C 15 15
120 Lebanon 27514 G 15 15
121 Lebanon 27515 A 15 15
122 Lebanon 27516 G 15 15
123 Lebanon 27517 G 15 15
124 Lebanon 27518 G 15 15
125 Lebanon 27519 C 15 15
126 Lebanon 27520 A 15 15
127 Lebanon 27521 A 15 15
128 Lebanon 27522 T 15 15
129 Lebanon 27523 T 15 15
130 Lebanon 27524 C 15 15
131 Lebanon 27525 A 15 15
132 Lebanon 27526 C 15 15
133 Lebanon 27527 C 15 15
134 Lebanon 27528 A 14 14
135 Lebanon 27529 T 14 13
136 Lebanon 27530 T 14 13
137 Lebanon 27531 T 14 13
138 Lebanon 27532 C 14 13
139 Lebanon 27533 A 14 13
140 Lebanon 27534 T 14 13
141 Lebanon 27535 C 14 13
142 Lebanon 27536 C 14 13
143 Lebanon 27537 T 14 13
144 Lebanon 27538 C 14 13
145 Lebanon 27539 T 14 13
146 Lebanon 27540 A 14 13
147 Lebanon 27541 G 14 13
148 Lebanon 27542 C 14 13
149 Lebanon 27543 T 14 13
150 Lebanon 27544 G 14 13
151 Lebanon 27545 A 14 13
152 Lebanon 27546 T 14 13
153 Lebanon 27547 A 14 13
154 Lebanon 27548 A 14 13
155 Lebanon 27549 C 14 13
156 Lebanon 27550 A 14 13
157 Lebanon 27551 A 14 13
158 Lebanon 27552 A 14 13
159 Lebanon 27553 T 14 13
160 Lebanon 27554 T 14 13
161 Lebanon 27555 T 14 13
162 Lebanon 27556 G 14 13
163 Lebanon 27557 C 14 13
164 Lebanon 27558 A 14 13
165 Lebanon 27559 C 14 13
166 Lebanon 27560 T 14 13
167 Lebanon 27561 G 14 14
168 Lebanon 27562 A 14 14
169 Lebanon 27563 C 14 14
170 Lebanon 27564 T 14 14
171 Lebanon 27565 T 14 14
172 Lebanon 27566 G 14 14
173 Lebanon 27567 C 14 14
174 Lebanon 27568 T 14 14
175 Lebanon 27569 T 14 14
176 Lebanon 27570 T 14 14
177 Lebanon 27571 A 14 14
178 Lebanon 27572 G 14 14
179 Lebanon 27573 C 14 14
180 Lebanon 27574 A 14 14
181 Lebanon 27575 C 14 14
182 Lebanon 27576 T 14 14
183 Lebanon 27577 C 14 14
184 Lebanon 27578 A 14 14
185 Lebanon 27579 A 14 14
186 Lebanon 27580 T 14 14
187 Lebanon 27581 T 14 14
188 Lebanon 27582 T 14 14
189 Lebanon 27583 G 14 14
190 Lebanon 27584 C 14 14
191 Lebanon 27585 T 14 14
192 Lebanon 27586 T 14 14
193 Lebanon 27587 T 14 14
194 Lebanon 27588 T 14 14
195 Lebanon 27589 G 14 14
196 Lebanon 27590 C 14 14
197 Lebanon 27591 T 14 14
198 Lebanon 27592 T 14 14
199 Lebanon 27593 G 14 14
200 Lebanon 27594 T 14 14
201 Lebanon 27595 C 14 14
202 Lebanon 27596 C 14 14
203 Lebanon 27597 T 14 14
204 Lebanon 27598 G 14 14
205 Lebanon 27599 A 14 14
206 Lebanon 27600 C 14 14
207 Lebanon 27601 G 14 14
208 Lebanon 27602 G 14 14
209 Lebanon 27603 C 14 14
210 Lebanon 27604 G 14 14
211 Lebanon 27605 T 14 14
212 Lebanon 27606 A 14 14
213 Lebanon 27607 A 14 14
214 Lebanon 27608 A 14 14
215 Lebanon 27609 A 14 14
216 Lebanon 27610 C 14 14
217 Lebanon 27611 A 14 14
218 Lebanon 27612 C 14 14
219 Lebanon 27613 G 14 14
220 Lebanon 27614 T 14 14
221 Lebanon 27615 C 14 14
222 Lebanon 27616 T 14 14
223 Lebanon 27617 A 14 14
224 Lebanon 27618 T 14 14
225 Lebanon 27619 C 14 14
226 Lebanon 27620 A 14 14
227 Lebanon 27621 G 14 14
228 Lebanon 27622 T 14 14
229 Lebanon 27623 T 14 14
230 Lebanon 27624 A 14 14
231 Lebanon 27625 C 14 14
232 Lebanon 27626 G 14 14
233 Lebanon 27627 T 14 14
234 Lebanon 27628 G 14 14
235 Lebanon 27629 C 14 14
236 Lebanon 27630 C 14 14
237 Lebanon 27631 A 14 14
238 Lebanon 27632 G 14 14
239 Lebanon 27633 A 14 14
240 Lebanon 27634 T 14 14
241 Lebanon 27635 C 14 14
242 Lebanon 27636 A 14 14
243 Lebanon 27637 G 14 14
244 Lebanon 27638 T 14 14
245 Lebanon 27639 T 14 14
246 Lebanon 27640 T 14 14
247 Lebanon 27641 C 14 14
248 Lebanon 27642 A 14 14
249 Lebanon 27643 C T 14 13 Pro84Ser
250 Lebanon 27644 C 14 14
251 Lebanon 27645 T 14 14
252 Lebanon 27646 A 14 14
253 Lebanon 27647 A 14 14
254 Lebanon 27648 A 14 14
255 Lebanon 27649 C 14 14
256 Lebanon 27650 T 14 14
257 Lebanon 27651 G 14 14
258 Lebanon 27652 T 14 14
259 Lebanon 27653 T 14 14
260 Lebanon 27654 C 14 14
261 Lebanon 27655 A 14 14
262 Lebanon 27656 T 14 14
263 Lebanon 27657 C 14 14
264 Lebanon 27658 A 14 14
265 Lebanon 27659 G 14 14
266 Lebanon 27660 A 14 14
267 Lebanon 27661 C 14 14
268 Lebanon 27662 A 14 14
269 Lebanon 27663 A 14 14
270 Lebanon 27664 G 14 14
271 Lebanon 27665 A 14 14
272 Lebanon 27666 G 14 14
273 Lebanon 27667 G 14 14
274 Lebanon 27668 A 14 14
275 Lebanon 27669 A 14 14
276 Lebanon 27670 G 14 14
277 Lebanon 27671 T 14 14
278 Lebanon 27672 T 14 14
279 Lebanon 27673 C 14 14
280 Lebanon 27674 A 14 14
281 Lebanon 27675 A 14 14
282 Lebanon 27676 G 14 14
283 Lebanon 27677 A 14 14
284 Lebanon 27678 A 14 14
285 Lebanon 27679 C 14 14
286 Lebanon 27680 T 14 14
287 Lebanon 27681 T 14 14
288 Lebanon 27682 T 14 14
289 Lebanon 27683 A 14 14
290 Lebanon 27684 C 14 14
291 Lebanon 27685 T 14 14
292 Lebanon 27686 C 14 14
293 Lebanon 27687 T 14 14
294 Lebanon 27688 C 14 14
295 Lebanon 27689 C 14 14
296 Lebanon 27690 A 14 14
297 Lebanon 27691 A 14 14
298 Lebanon 27692 T 14 14
299 Lebanon 27693 T 14 14
300 Lebanon 27694 T 14 14
301 Lebanon 27695 T 14 14
302 Lebanon 27696 T 14 14
303 Lebanon 27697 C 14 14
304 Lebanon 27698 T 14 14
305 Lebanon 27699 T 14 14
306 Lebanon 27700 A 14 14
307 Lebanon 27701 T 14 14
308 Lebanon 27702 T 14 14
309 Lebanon 27703 G 14 14
310 Lebanon 27704 T 14 14
311 Lebanon 27705 T 14 14
312 Lebanon 27706 G 14 14
313 Lebanon 27707 C 14 14
314 Lebanon 27708 G 14 14
315 Lebanon 27709 G 14 14
316 Lebanon 27710 C 14 14
317 Lebanon 27711 A 14 14
318 Lebanon 27712 A 14 14
319 Lebanon 27713 T 14 14
320 Lebanon 27714 A 14 14
321 Lebanon 27715 G 14 14
322 Lebanon 27716 T 14 14
323 Lebanon 27717 G 14 14
324 Lebanon 27718 T 14 14
325 Lebanon 27719 T 14 14
326 Lebanon 27720 T 14 14
327 Lebanon 27721 A 14 14
328 Lebanon 27722 T 14 14
329 Lebanon 27723 A 14 14
330 Lebanon 27724 A 14 14
331 Lebanon 27725 C 14 14
332 Lebanon 27726 A 14 14
333 Lebanon 27727 C 14 14
334 Lebanon 27728 T 14 14
335 Lebanon 27729 T 14 14
336 Lebanon 27730 T 14 14
337 Lebanon 27731 G 14 14
338 Lebanon 27732 C 14 14
339 Lebanon 27733 T 14 14
340 Lebanon 27734 T 14 14
341 Lebanon 27735 C 14 14
342 Lebanon 27736 A 14 14
343 Lebanon 27737 C 14 14
344 Lebanon 27738 A 14 14
345 Lebanon 27739 C 14 14
346 Lebanon 27740 T 14 14
347 Lebanon 27741 C 14 14
348 Lebanon 27742 A 14 14
349 Lebanon 27743 A 14 14
350 Lebanon 27744 A 14 14
351 Lebanon 27745 A 14 14
352 Lebanon 27746 G 14 14
353 Lebanon 27747 A 14 14
354 Lebanon 27748 A 14 14
355 Lebanon 27749 A 14 14
356 Lebanon 27750 G 14 14
357 Lebanon 27751 A 14 14
358 Lebanon 27752 C 14 14
359 Lebanon 27753 A 14 14
360 Lebanon 27754 G 14 14
361 Lebanon 27755 A 14 14
362 Lebanon 27756 A 14 14
363 Lebanon 27757 T 14 14
364 Lebanon 27758 G 14 14
365 Lebanon 27759 A 14 14