National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24         1                            
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 27394 A 8 8
1 Kuwait 27395 T 8 8
2 Kuwait 27396 G 8 8
3 Kuwait 27397 A 8 8
4 Kuwait 27398 A 8 8
5 Kuwait 27399 A 8 8
6 Kuwait 27400 A 8 8
7 Kuwait 27401 T 8 8
8 Kuwait 27402 T 8 8
9 Kuwait 27403 A 8 8
10 Kuwait 27404 T 8 8
11 Kuwait 27405 T 8 8
12 Kuwait 27406 C 8 8
13 Kuwait 27407 T 8 8
14 Kuwait 27408 T 8 8
15 Kuwait 27409 T 8 8
16 Kuwait 27410 T 8 8
17 Kuwait 27411 C 8 8
18 Kuwait 27412 T 8 8
19 Kuwait 27413 T 8 8
20 Kuwait 27414 G 8 8
21 Kuwait 27415 G 8 8
22 Kuwait 27416 C 8 8
23 Kuwait 27417 A 8 8
24 Kuwait 27418 C 8 8
25 Kuwait 27419 T 8 8
26 Kuwait 27420 G 8 8
27 Kuwait 27421 A 8 8
28 Kuwait 27422 T 8 8
29 Kuwait 27423 A 8 8
30 Kuwait 27424 A 8 8
31 Kuwait 27425 C 8 8
32 Kuwait 27426 A 8 8
33 Kuwait 27427 C 8 8
34 Kuwait 27428 T 8 8
35 Kuwait 27429 C 8 8
36 Kuwait 27430 G 8 8
37 Kuwait 27431 C 8 8
38 Kuwait 27432 T 8 8
39 Kuwait 27433 A 8 8
40 Kuwait 27434 C 8 8
41 Kuwait 27435 T 8 8
42 Kuwait 27436 T 8 8
43 Kuwait 27437 G 8 8
44 Kuwait 27438 T 8 8
45 Kuwait 27439 G 8 8
46 Kuwait 27440 A 8 8
47 Kuwait 27441 G 8 8
48 Kuwait 27442 C 8 8
49 Kuwait 27443 T 8 8
50 Kuwait 27444 T 8 8
51 Kuwait 27445 T 8 8
52 Kuwait 27446 A 8 8
53 Kuwait 27447 T 8 8
54 Kuwait 27448 C 8 8
55 Kuwait 27449 A 8 8
56 Kuwait 27450 C 8 8
57 Kuwait 27451 T 8 8
58 Kuwait 27452 A 8 8
59 Kuwait 27453 C 8 8
60 Kuwait 27454 C 8 8
61 Kuwait 27455 A 8 8
62 Kuwait 27456 A 8 8
63 Kuwait 27457 G 8 8
64 Kuwait 27458 A 8 8
65 Kuwait 27459 G 8 8
66 Kuwait 27460 T 8 8
67 Kuwait 27461 G 8 8
68 Kuwait 27462 T 8 8
69 Kuwait 27463 G 8 8
70 Kuwait 27464 T 8 8
71 Kuwait 27465 T 8 8
72 Kuwait 27466 A 8 8
73 Kuwait 27467 G 8 8
74 Kuwait 27468 A 8 8
75 Kuwait 27469 G 8 8
76 Kuwait 27470 G 8 8
77 Kuwait 27471 T 8 8
78 Kuwait 27472 A 8 8
79 Kuwait 27473 C 8 8
80 Kuwait 27474 A 8 8
81 Kuwait 27475 A 8 8
82 Kuwait 27476 C 8 8
83 Kuwait 27477 A 8 8
84 Kuwait 27478 G 8 8
85 Kuwait 27479 T 8 8
86 Kuwait 27480 A 8 8
87 Kuwait 27481 C 8 8
88 Kuwait 27482 T 8 8
89 Kuwait 27483 T 8 8
90 Kuwait 27484 T 8 8
91 Kuwait 27485 T 8 8
92 Kuwait 27486 A 8 8
93 Kuwait 27487 A 8 8
94 Kuwait 27488 A 8 8
95 Kuwait 27489 A 8 8
96 Kuwait 27490 G 8 8
97 Kuwait 27491 A 8 8
98 Kuwait 27492 A 8 8
99 Kuwait 27493 C 8 8
100 Kuwait 27494 C 8 8
101 Kuwait 27495 T 8 8
102 Kuwait 27496 T 8 8
103 Kuwait 27497 G 8 8
104 Kuwait 27498 C 8 8
105 Kuwait 27499 T 8 8
106 Kuwait 27500 C 8 8
107 Kuwait 27501 T 8 8
108 Kuwait 27502 T 8 8
109 Kuwait 27503 C 8 8
110 Kuwait 27504 T 8 8
111 Kuwait 27505 G 8 8
112 Kuwait 27506 G 8 8
113 Kuwait 27507 A 8 8
114 Kuwait 27508 A 8 8
115 Kuwait 27509 C 8 8
116 Kuwait 27510 A 8 8
117 Kuwait 27511 T 8 8
118 Kuwait 27512 A 8 8
119 Kuwait 27513 C 8 8
120 Kuwait 27514 G 8 8
121 Kuwait 27515 A 8 8
122 Kuwait 27516 G 8 8
123 Kuwait 27517 G 8 8
124 Kuwait 27518 G 8 8
125 Kuwait 27519 C 8 8
126 Kuwait 27520 A 8 8
127 Kuwait 27521 A 8 8
128 Kuwait 27522 T 8 8
129 Kuwait 27523 T 8 8
130 Kuwait 27524 C 8 8
131 Kuwait 27525 A 8 8
132 Kuwait 27526 C 8 8
133 Kuwait 27527 C 8 8
134 Kuwait 27528 A 8 8
135 Kuwait 27529 T 8 8
136 Kuwait 27530 T 8 8
137 Kuwait 27531 T 8 8
138 Kuwait 27532 C 8 8
139 Kuwait 27533 A 8 8
140 Kuwait 27534 T 8 8
141 Kuwait 27535 C 8 8
142 Kuwait 27536 C 8 8
143 Kuwait 27537 T 8 8
144 Kuwait 27538 C 8 8
145 Kuwait 27539 T 8 8
146 Kuwait 27540 A 8 8
147 Kuwait 27541 G 8 8
148 Kuwait 27542 C 8 8
149 Kuwait 27543 T 8 8
150 Kuwait 27544 G 8 8
151 Kuwait 27545 A 8 8
152 Kuwait 27546 T 8 8
153 Kuwait 27547 A 8 8
154 Kuwait 27548 A 8 8
155 Kuwait 27549 C 8 8
156 Kuwait 27550 A 8 8
157 Kuwait 27551 A 8 8
158 Kuwait 27552 A 8 8
159 Kuwait 27553 T 8 8
160 Kuwait 27554 T 8 8
161 Kuwait 27555 T 8 8
162 Kuwait 27556 G 8 8
163 Kuwait 27557 C 8 8
164 Kuwait 27558 A 8 8
165 Kuwait 27559 C 8 8
166 Kuwait 27560 T 8 8
167 Kuwait 27561 G 8 8
168 Kuwait 27562 A 8 8
169 Kuwait 27563 C 8 8
170 Kuwait 27564 T 8 8
171 Kuwait 27565 T 8 8
172 Kuwait 27566 G 8 8
173 Kuwait 27567 C 8 8
174 Kuwait 27568 T 8 8
175 Kuwait 27569 T 8 8
176 Kuwait 27570 T 8 8
177 Kuwait 27571 A 8 8
178 Kuwait 27572 G 8 8
179 Kuwait 27573 C 8 8
180 Kuwait 27574 A 8 8
181 Kuwait 27575 C 8 8
182 Kuwait 27576 T 8 8
183 Kuwait 27577 C 8 8
184 Kuwait 27578 A 8 8
185 Kuwait 27579 A 8 8
186 Kuwait 27580 T 8 8
187 Kuwait 27581 T 8 8
188 Kuwait 27582 T 8 8
189 Kuwait 27583 G 8 8
190 Kuwait 27584 C 8 8
191 Kuwait 27585 T 8 8
192 Kuwait 27586 T 8 8
193 Kuwait 27587 T 8 8
194 Kuwait 27588 T 8 8
195 Kuwait 27589 G 8 8
196 Kuwait 27590 C 8 8
197 Kuwait 27591 T 8 8
198 Kuwait 27592 T 8 8
199 Kuwait 27593 G 8 8
200 Kuwait 27594 T 8 8
201 Kuwait 27595 C 8 8
202 Kuwait 27596 C 8 8
203 Kuwait 27597 T 8 8
204 Kuwait 27598 G 8 8
205 Kuwait 27599 A 8 8
206 Kuwait 27600 C 8 8
207 Kuwait 27601 G 8 8
208 Kuwait 27602 G 8 8
209 Kuwait 27603 C 8 8
210 Kuwait 27604 G 8 8
211 Kuwait 27605 T 8 8
212 Kuwait 27606 A 8 8
213 Kuwait 27607 A 8 8
214 Kuwait 27608 A 8 8
215 Kuwait 27609 A 8 8
216 Kuwait 27610 C 8 8
217 Kuwait 27611 A 8 8
218 Kuwait 27612 C 8 8
219 Kuwait 27613 G T 8 7 Val74Phe
220 Kuwait 27614 T 8 8
221 Kuwait 27615 C 8 8
222 Kuwait 27616 T 8 8
223 Kuwait 27617 A 8 8
224 Kuwait 27618 T 8 8
225 Kuwait 27619 C 8 8
226 Kuwait 27620 A 8 8
227 Kuwait 27621 G 8 8
228 Kuwait 27622 T 8 8
229 Kuwait 27623 T 8 8
230 Kuwait 27624 A 8 8
231 Kuwait 27625 C 8 8
232 Kuwait 27626 G 8 8
233 Kuwait 27627 T 8 8
234 Kuwait 27628 G 8 8
235 Kuwait 27629 C 8 8
236 Kuwait 27630 C 8 8
237 Kuwait 27631 A 8 8
238 Kuwait 27632 G 8 8
239 Kuwait 27633 A 8 8
240 Kuwait 27634 T 8 8
241 Kuwait 27635 C 8 8
242 Kuwait 27636 A 8 8
243 Kuwait 27637 G 8 8
244 Kuwait 27638 T 8 8
245 Kuwait 27639 T 8 8
246 Kuwait 27640 T 8 8
247 Kuwait 27641 C 8 8
248 Kuwait 27642 A 8 8
249 Kuwait 27643 C 8 8
250 Kuwait 27644 C 8 8
251 Kuwait 27645 T 8 8
252 Kuwait 27646 A 8 8
253 Kuwait 27647 A 8 8
254 Kuwait 27648 A 8 8
255 Kuwait 27649 C 8 8
256 Kuwait 27650 T 8 8
257 Kuwait 27651 G 8 8
258 Kuwait 27652 T 8 8
259 Kuwait 27653 T 8 8
260 Kuwait 27654 C 8 8
261 Kuwait 27655 A 8 8
262 Kuwait 27656 T 8 8
263 Kuwait 27657 C 8 8
264 Kuwait 27658 A 8 8
265 Kuwait 27659 G 8 8
266 Kuwait 27660 A 8 8
267 Kuwait 27661 C 8 8
268 Kuwait 27662 A 8 8
269 Kuwait 27663 A 8 8
270 Kuwait 27664 G 8 8
271 Kuwait 27665 A 8 8
272 Kuwait 27666 G 8 8
273 Kuwait 27667 G 8 8
274 Kuwait 27668 A 8 8
275 Kuwait 27669 A 8 8
276 Kuwait 27670 G 8 8
277 Kuwait 27671 T 8 8
278 Kuwait 27672 T 8 8
279 Kuwait 27673 C 8 8
280 Kuwait 27674 A 8 8
281 Kuwait 27675 A 8 8
282 Kuwait 27676 G 8 8
283 Kuwait 27677 A 8 8
284 Kuwait 27678 A 8 8
285 Kuwait 27679 C 8 8
286 Kuwait 27680 T 8 8
287 Kuwait 27681 T 8 8
288 Kuwait 27682 T 8 8
289 Kuwait 27683 A 8 8
290 Kuwait 27684 C 8 8
291 Kuwait 27685 T 8 8
292 Kuwait 27686 C 8 8
293 Kuwait 27687 T 8 8
294 Kuwait 27688 C 8 8
295 Kuwait 27689 C 8 8
296 Kuwait 27690 A 8 8
297 Kuwait 27691 A 8 8
298 Kuwait 27692 T 8 8
299 Kuwait 27693 T 8 8
300 Kuwait 27694 T 8 8
301 Kuwait 27695 T 8 8
302 Kuwait 27696 T 8 8
303 Kuwait 27697 C 8 8
304 Kuwait 27698 T 8 8
305 Kuwait 27699 T 8 8
306 Kuwait 27700 A 8 8
307 Kuwait 27701 T 8 8
308 Kuwait 27702 T 8 8
309 Kuwait 27703 G 8 8
310 Kuwait 27704 T 8 8
311 Kuwait 27705 T 8 8
312 Kuwait 27706 G 8 8
313 Kuwait 27707 C 8 8
314 Kuwait 27708 G 8 8
315 Kuwait 27709 G 8 8
316 Kuwait 27710 C 8 8
317 Kuwait 27711 A 8 8
318 Kuwait 27712 A 8 8
319 Kuwait 27713 T 8 8
320 Kuwait 27714 A 8 8
321 Kuwait 27715 G 8 8
322 Kuwait 27716 T 8 8
323 Kuwait 27717 G 8 8
324 Kuwait 27718 T 8 8
325 Kuwait 27719 T 8 8
326 Kuwait 27720 T 8 8
327 Kuwait 27721 A 8 8
328 Kuwait 27722 T 8 8
329 Kuwait 27723 A 8 8
330 Kuwait 27724 A 8 8
331 Kuwait 27725 C 8 8
332 Kuwait 27726 A 8 8
333 Kuwait 27727 C 8 8
334 Kuwait 27728 T 8 8
335 Kuwait 27729 T 8 8
336 Kuwait 27730 T 8 8
337 Kuwait 27731 G 8 8
338 Kuwait 27732 C 8 8
339 Kuwait 27733 T 8 8
340 Kuwait 27734 T 8 8
341 Kuwait 27735 C 8 8
342 Kuwait 27736 A 8 8
343 Kuwait 27737 C 8 8
344 Kuwait 27738 A 8 8
345 Kuwait 27739 C 8 8
346 Kuwait 27740 T 8 8
347 Kuwait 27741 C 8 8
348 Kuwait 27742 A 8 8
349 Kuwait 27743 A 8 8
350 Kuwait 27744 A 8 8
351 Kuwait 27745 A 8 8
352 Kuwait 27746 G 8 8
353 Kuwait 27747 A 8 8
354 Kuwait 27748 A 8 8
355 Kuwait 27749 A 8 8
356 Kuwait 27750 G 8 8
357 Kuwait 27751 A 8 8
358 Kuwait 27752 C 8 8
359 Kuwait 27753 A 8 8
360 Kuwait 27754 G 8 8
361 Kuwait 27755 A 8 8
362 Kuwait 27756 A 8 8
363 Kuwait 27757 T 8 8
364 Kuwait 27758 G 8 8
365 Kuwait 27759 A 8 8