National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1                                    
C     18   1                                  
D     6                                      
E 1   24                                      
F     30         1                            
G     12           1                       1  
H     9                                      
I     25                                      
K     21                                      
L     45                   1                  
M     6                                      
N     6                       1              
P     18                   2                  
Q     15                 1                    
R     15                                      
S     21                                      
T     30 1             2                      
V     24                   1                  
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jordan 27394 A 579 579
1 Jordan 27395 T 579 579
2 Jordan 27396 G 579 579
3 Jordan 27397 A 579 579
4 Jordan 27398 A 579 579
5 Jordan 27399 A 579 579
6 Jordan 27400 A 579 579
7 Jordan 27401 T 579 579
8 Jordan 27402 T 579 579
9 Jordan 27403 A 579 579
10 Jordan 27404 T 579 579
11 Jordan 27405 T 579 579
12 Jordan 27406 C 579 579
13 Jordan 27407 T 579 579
14 Jordan 27408 T 579 579
15 Jordan 27409 T 579 579
16 Jordan 27410 T 579 579
17 Jordan 27411 C 579 579
18 Jordan 27412 T 579 579
19 Jordan 27413 T 579 579
20 Jordan 27414 G 579 579
21 Jordan 27415 G 579 579
22 Jordan 27416 C 579 579
23 Jordan 27417 A 579 579
24 Jordan 27418 C 579 579
25 Jordan 27419 T 579 579
26 Jordan 27420 G 579 579
27 Jordan 27421 A 579 579
28 Jordan 27422 T 579 579
29 Jordan 27423 A 579 579
30 Jordan 27424 A G 579 575 Thr11Ala
31 Jordan 27425 C 579 579
32 Jordan 27426 A 579 579
33 Jordan 27427 C 579 579
34 Jordan 27428 T 579 579
35 Jordan 27429 C 579 579
36 Jordan 27430 G 579 579
37 Jordan 27431 C 579 579
38 Jordan 27432 T 579 579
39 Jordan 27433 A 579 579
40 Jordan 27434 C T 579 578 Thr14Ile
41 Jordan 27435 T 579 579
42 Jordan 27436 T 579 579
43 Jordan 27437 G 579 579
44 Jordan 27438 T 579 579
45 Jordan 27439 G 579 579
46 Jordan 27440 A 579 579
47 Jordan 27441 G 579 579
48 Jordan 27442 C 579 579
49 Jordan 27443 T 579 579
50 Jordan 27444 T 579 579
51 Jordan 27445 T 579 579
52 Jordan 27446 A 579 579
53 Jordan 27447 T 579 579
54 Jordan 27448 C 579 579
55 Jordan 27449 A 579 579
56 Jordan 27450 C 579 579
57 Jordan 27451 T 579 579
58 Jordan 27452 A 579 579
59 Jordan 27453 C 579 579
60 Jordan 27454 C 579 579
61 Jordan 27455 A 579 579
62 Jordan 27456 A 579 579
63 Jordan 27457 G 579 579
64 Jordan 27458 A 579 579
65 Jordan 27459 G 579 579
66 Jordan 27460 T 579 579
67 Jordan 27461 G 579 579
68 Jordan 27462 T 579 579
69 Jordan 27463 G 579 579
70 Jordan 27464 T 579 579
71 Jordan 27465 T 579 579
72 Jordan 27466 A 579 579
73 Jordan 27467 G 579 579
74 Jordan 27468 A 579 579
75 Jordan 27469 G 579 579
76 Jordan 27470 G 579 579
77 Jordan 27471 T 579 579
78 Jordan 27472 A 579 579
79 Jordan 27473 C 579 579
80 Jordan 27474 A 579 579
81 Jordan 27475 A 579 579
82 Jordan 27476 C 579 579
83 Jordan 27477 A 579 579
84 Jordan 27478 G T 579 578 Val29Leu
85 Jordan 27479 T 579 579
86 Jordan 27480 A 579 579
87 Jordan 27481 C 579 579
88 Jordan 27482 T 579 579
89 Jordan 27483 T 579 579
90 Jordan 27484 T 579 579
91 Jordan 27485 T 579 579
92 Jordan 27486 A 579 579
93 Jordan 27487 A 579 579
94 Jordan 27488 A 579 579
95 Jordan 27489 A 579 579
96 Jordan 27490 G 579 579
97 Jordan 27491 A 579 579
98 Jordan 27492 A 579 579
99 Jordan 27493 C 579 579
100 Jordan 27494 C 579 579
101 Jordan 27495 T 579 579
102 Jordan 27496 T 579 579
103 Jordan 27497 G 579 579
104 Jordan 27498 C T 579 578 Cys35Cys
105 Jordan 27499 T 579 579
106 Jordan 27500 C 579 579
107 Jordan 27501 T 579 579
108 Jordan 27502 T 579 579
109 Jordan 27503 C 579 579
110 Jordan 27504 T 579 579
111 Jordan 27505 G 579 579
112 Jordan 27506 G T 579 578 Gly38Val
113 Jordan 27507 A G 579 578 Gly38Gly
114 Jordan 27508 A 579 579
115 Jordan 27509 C T 579 564 Thr39Ile
116 Jordan 27510 A 579 579
117 Jordan 27511 T 579 579
118 Jordan 27512 A 579 579
119 Jordan 27513 C 579 579
120 Jordan 27514 G 578 578
121 Jordan 27515 A 578 578
122 Jordan 27516 G 578 578
123 Jordan 27517 G 578 578
124 Jordan 27518 G 578 578
125 Jordan 27519 C 577 577
126 Jordan 27520 A 577 577
127 Jordan 27521 A 577 577
128 Jordan 27522 T C 577 576 Asn43Asn
129 Jordan 27523 T 577 577
130 Jordan 27524 C 577 577
131 Jordan 27525 A 577 577
132 Jordan 27526 C 577 577
133 Jordan 27527 C T 575 574 Pro45Leu
134 Jordan 27528 A 568 565
135 Jordan 27529 T 567 565
136 Jordan 27530 T 567 565
137 Jordan 27531 T 567 565
138 Jordan 27532 C 567 565
139 Jordan 27533 A 567 565
140 Jordan 27534 T 567 566
141 Jordan 27535 C 567 566
142 Jordan 27536 C 567 566
143 Jordan 27537 T 567 566
144 Jordan 27538 C 567 566
145 Jordan 27539 T 567 566
146 Jordan 27540 A 567 566
147 Jordan 27541 G 567 566
148 Jordan 27542 C 567 565
149 Jordan 27543 T 567 565
150 Jordan 27544 G 567 565
151 Jordan 27545 A 567 565
152 Jordan 27546 T 567 565
153 Jordan 27547 A 567 565
154 Jordan 27548 A 567 565
155 Jordan 27549 C 567 565
156 Jordan 27550 A 567 566
157 Jordan 27551 A 567 567
158 Jordan 27552 A 567 567
159 Jordan 27553 T 567 567
160 Jordan 27554 T 567 567
161 Jordan 27555 T 567 567
162 Jordan 27556 G 567 567
163 Jordan 27557 C 567 567
164 Jordan 27558 A 567 567
165 Jordan 27559 C 567 567
166 Jordan 27560 T 567 567
167 Jordan 27561 G 567 567
168 Jordan 27562 A 567 567
169 Jordan 27563 C 567 567
170 Jordan 27564 T 567 567
171 Jordan 27565 T 567 567
172 Jordan 27566 G 567 567
173 Jordan 27567 C 567 567
174 Jordan 27568 T 567 567
175 Jordan 27569 T 567 567
176 Jordan 27570 T 567 567
177 Jordan 27571 A 567 567
178 Jordan 27572 G 567 567
179 Jordan 27573 C 567 567
180 Jordan 27574 A 567 567
181 Jordan 27575 C 567 567
182 Jordan 27576 T 567 567
183 Jordan 27577 C 567 567
184 Jordan 27578 A 567 567
185 Jordan 27579 A 567 567
186 Jordan 27580 T 567 567
187 Jordan 27581 T 567 567
188 Jordan 27582 T 566 566
189 Jordan 27583 G 566 566
190 Jordan 27584 C 566 566
191 Jordan 27585 T 566 566
192 Jordan 27586 T 566 566
193 Jordan 27587 T 566 566
194 Jordan 27588 T 566 566
195 Jordan 27589 G 566 566
196 Jordan 27590 C 566 566
197 Jordan 27591 T 566 566
198 Jordan 27592 T 566 566
199 Jordan 27593 G 566 566
200 Jordan 27594 T 566 566
201 Jordan 27595 C 566 566
202 Jordan 27596 C 566 566
203 Jordan 27597 T 566 566
204 Jordan 27598 G 566 566
205 Jordan 27599 A 566 566
206 Jordan 27600 C 566 565
207 Jordan 27601 G 566 565
208 Jordan 27602 G 566 566
209 Jordan 27603 C 566 566
210 Jordan 27604 G 566 566
211 Jordan 27605 T 566 566
212 Jordan 27606 A 566 566
213 Jordan 27607 A 566 566
214 Jordan 27608 A 566 566
215 Jordan 27609 A 566 566
216 Jordan 27610 C 566 565
217 Jordan 27611 A 566 565
218 Jordan 27612 C 566 566
219 Jordan 27613 G 566 566
220 Jordan 27614 T 566 566
221 Jordan 27615 C 566 566
222 Jordan 27616 T 566 566
223 Jordan 27617 A 566 566
224 Jordan 27618 T 566 566
225 Jordan 27619 C 566 566
226 Jordan 27620 A 566 565
227 Jordan 27621 G 566 565
228 Jordan 27622 T 566 565
229 Jordan 27623 T 566 565
230 Jordan 27624 A 566 565
231 Jordan 27625 C 566 564
232 Jordan 27626 G 566 564
233 Jordan 27627 T 566 564
234 Jordan 27628 G 566 564
235 Jordan 27629 C 566 564
236 Jordan 27630 C A 566 563 Ala79Ala
237 Jordan 27631 A 566 564
238 Jordan 27632 G 566 564
239 Jordan 27633 A 566 564
240 Jordan 27634 T 567 565
241 Jordan 27635 C 566 564
242 Jordan 27636 A 566 563
243 Jordan 27637 G 566 564
244 Jordan 27638 T 566 564
245 Jordan 27639 T 566 564
246 Jordan 27640 T 565 563
247 Jordan 27641 C 565 565
248 Jordan 27642 A 565 565
249 Jordan 27643 C 565 565
250 Jordan 27644 C T 565 564 Pro84Leu
251 Jordan 27645 T 565 565
252 Jordan 27646 A 565 565
253 Jordan 27647 A 565 565
254 Jordan 27648 A 565 564
255 Jordan 27649 C 565 562
256 Jordan 27650 T 565 564
257 Jordan 27651 G 565 564
258 Jordan 27652 T 565 564
259 Jordan 27653 T 565 564
260 Jordan 27654 C T 565 557 Phe87Phe
261 Jordan 27655 A 565 564
262 Jordan 27656 T 565 564
263 Jordan 27657 C 565 564
264 Jordan 27658 A 565 564
265 Jordan 27659 G 565 564
266 Jordan 27660 A 565 564
267 Jordan 27661 C 565 564
268 Jordan 27662 A 565 564
269 Jordan 27663 A 565 564
270 Jordan 27664 G T 565 563 Glu91*
271 Jordan 27665 A 565 564
272 Jordan 27666 G 565 564
273 Jordan 27667 G 565 564
274 Jordan 27668 A 564 563
275 Jordan 27669 A 564 563
276 Jordan 27670 G 564 564
277 Jordan 27671 T 564 564
278 Jordan 27672 T 564 564
279 Jordan 27673 C A 564 562 Gln94Lys
280 Jordan 27674 A 564 564
281 Jordan 27675 A 564 564
282 Jordan 27676 G 564 564
283 Jordan 27677 A 564 564
284 Jordan 27678 A 564 564
285 Jordan 27679 C 564 564
286 Jordan 27680 T 564 564
287 Jordan 27681 T 564 564
288 Jordan 27682 T 564 564
289 Jordan 27683 A 564 564
290 Jordan 27684 C T 564 563 Tyr97Tyr
291 Jordan 27685 T 564 564
292 Jordan 27686 C 563 563
293 Jordan 27687 T 563 563
294 Jordan 27688 C 563 563
295 Jordan 27689 C 563 563
296 Jordan 27690 A 563 563
297 Jordan 27691 A 563 563
298 Jordan 27692 T 563 563
299 Jordan 27693 T 563 563
300 Jordan 27694 T 563 563
301 Jordan 27695 T 563 563
302 Jordan 27696 T 563 563
303 Jordan 27697 C 562 562
304 Jordan 27698 T 562 562
305 Jordan 27699 T 562 562
306 Jordan 27700 A 562 562
307 Jordan 27701 T 562 562
308 Jordan 27702 T 562 562
309 Jordan 27703 G 562 562
310 Jordan 27704 T 562 562
311 Jordan 27705 T 562 562
312 Jordan 27706 G 562 562
313 Jordan 27707 C 562 562
314 Jordan 27708 G 562 562
315 Jordan 27709 G 562 562
316 Jordan 27710 C 562 562
317 Jordan 27711 A 562 562
318 Jordan 27712 A 562 562
319 Jordan 27713 T 562 562
320 Jordan 27714 A 562 562
321 Jordan 27715 G 562 562
322 Jordan 27716 T 562 562
323 Jordan 27717 G 562 562
324 Jordan 27718 T 562 562
325 Jordan 27719 T 562 562
326 Jordan 27720 T 562 562
327 Jordan 27721 A 562 562
328 Jordan 27722 T 562 562
329 Jordan 27723 A 562 562
330 Jordan 27724 A 562 562
331 Jordan 27725 C 562 562
332 Jordan 27726 A 561 561
333 Jordan 27727 C 561 561
334 Jordan 27728 T 559 559
335 Jordan 27729 T 559 559
336 Jordan 27730 T 559 559
337 Jordan 27731 G 559 559
338 Jordan 27732 C 559 559
339 Jordan 27733 T 559 559
340 Jordan 27734 T 559 559
341 Jordan 27735 C 559 559
342 Jordan 27736 A 559 559
343 Jordan 27737 C 559 559
344 Jordan 27738 A 559 559
345 Jordan 27739 C 559 559
346 Jordan 27740 T 559 559
347 Jordan 27741 C T 559 534 Leu116Leu
348 Jordan 27742 A 559 559
349 Jordan 27743 A 559 559
350 Jordan 27744 A 559 559
351 Jordan 27745 A 559 559
352 Jordan 27746 G 559 559
353 Jordan 27747 A 559 559
354 Jordan 27748 A 559 559
355 Jordan 27749 A 559 559
356 Jordan 27750 G 559 559
357 Jordan 27751 A 559 559
358 Jordan 27752 C 559 559
359 Jordan 27753 A 559 559
360 Jordan 27754 G 559 559
361 Jordan 27755 A 559 559
362 Jordan 27756 A 559 559
363 Jordan 27757 T 559 559
364 Jordan 27758 G 559 559
365 Jordan 27759 A 559 559