National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                             1        
-     370                                      
?                                            
A     27 4                             5 5 5  
C     18   2     1                           2
D     6     1     1                          
E 3   24 2   1 1   2     1         1          
F     30         3         6                  
G 1   12     3     2                 1     1  
H     9             2               2       3
I     25               3   2             2 1  
K     21       2         1     2              
L     45         6         5 1   2   1        
M     6               1                 1    
N     6                 1     1              
P     18                   4     1   1 3      
Q 1   15             2     1     1 2 1        
R     15   1           2             1 1 1    
S     21         2 1       2           3      
T     30               6               1 2    
V     24         2     3   3               2  
Y     15   1                                 2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Japan 27394 A 17019 17019
1 Japan 27395 T 17020 17020
2 Japan 27396 G T 17020 17019 Met1?
3 Japan 27397 A 17021 17021
4 Japan 27398 A 17021 17021
5 Japan 27399 A 17021 17021
6 Japan 27400 A C 17021 17020 Ile3Leu
7 Japan 27401 T 17021 17021
8 Japan 27402 T A 17021 17020 Ile3Ile
9 Japan 27403 A 17022 17022
10 Japan 27404 T 17022 17022
11 Japan 27405 T 17022 17022
12 Japan 27406 C T 17022 17020 Leu5Phe
13 Japan 27407 T C 17022 17021 Leu5Pro
14 Japan 27408 T 17022 17022
15 Japan 27409 T C 17022 17021 Phe6Leu
16 Japan 27410 T 17022 17022
17 Japan 27411 C 17022 17022
18 Japan 27412 T 17022 17022
19 Japan 27413 T 17022 17022
20 Japan 27414 G A 17022 17021 Leu7Leu
21 Japan 27415 G A 17022 17021 Ala8Thr
22 Japan 27416 C T 17022 17021 Ala8Val
23 Japan 27417 A 17022 17022
24 Japan 27418 C 17022 17022
25 Japan 27419 T 17022 17022
26 Japan 27420 G 17022 17022
27 Japan 27421 A 17022 17022
28 Japan 27422 T 17022 17022
29 Japan 27423 A 17022 17022
30 Japan 27424 A 17022 17022
31 Japan 27425 C 17022 17022
32 Japan 27426 A T 17022 17018 Thr11Thr
33 Japan 27427 C 17022 17022
34 Japan 27428 T 17022 17022
35 Japan 27429 C 17022 17022
36 Japan 27430 G A 17022 17010 Ala13Thr
37 Japan 27431 C T 17022 17020 Ala13Val
38 Japan 27432 T A 17022 17021 Ala13Ala
39 Japan 27433 A 17022 17022
40 Japan 27434 C T 17022 17011 Thr14Ile
41 Japan 27435 T 17022 17022
42 Japan 27436 T 17022 17022
43 Japan 27437 G 17022 17022
44 Japan 27438 T 17022 17022
45 Japan 27439 G 17022 17022
46 Japan 27440 A 17022 17022
47 Japan 27441 G T 17022 17021 Glu16Asp
48 Japan 27442 C T 17022 17020 Leu17Phe
49 Japan 27443 T 17022 17022
50 Japan 27444 T 17022 17022
51 Japan 27445 T 17022 17022
52 Japan 27446 A 17022 17022
53 Japan 27447 T 17023 17023
54 Japan 27448 C T 17023 17022 His19Tyr
55 Japan 27449 A G 17023 17022 His19Arg
56 Japan 27450 C 17023 17023
57 Japan 27451 T 17023 17023
58 Japan 27452 A 17023 17023
59 Japan 27453 C 17023 17023
60 Japan 27454 C 17023 17023
61 Japan 27455 A 17023 17023
62 Japan 27456 A 17023 17023
63 Japan 27457 G 17023 17023
64 Japan 27458 A C 17023 17022 Glu22Ala
65 Japan 27459 G 17023 17023
66 Japan 27460 T 17023 17023
67 Japan 27461 G 17023 17023
68 Japan 27462 T 17023 17023
69 Japan 27463 G T 17023 17019 Val24Phe
70 Japan 27464 T 17023 17023
71 Japan 27465 T 17022 17022
72 Japan 27466 A 17022 17022
73 Japan 27467 G T,C 17022 17020 Arg25Ile-p.Arg25Thr
74 Japan 27468 A 17022 17022
75 Japan 27469 G 17022 17022
76 Japan 27470 G A 17022 17021 Gly26Asp
77 Japan 27471 T C 17022 17021 Gly26Gly
78 Japan 27472 A 17022 17022
79 Japan 27473 C 17022 17022
80 Japan 27474 A 17022 17022
81 Japan 27475 A T 17022 17021 Thr28Ser
82 Japan 27476 C T 17022 16998 Thr28Ile
83 Japan 27477 A G 17022 17019 Thr28Thr
84 Japan 27478 G T 17022 17019 Val29Leu
85 Japan 27479 T 17022 17022
86 Japan 27480 A 17022 17022
87 Japan 27481 C 17022 17022
88 Japan 27482 T G 17022 17021 Leu30Arg
89 Japan 27483 T 17022 17022
90 Japan 27484 T C 17022 17019 Leu31Leu
91 Japan 27485 T 17022 17022
92 Japan 27486 A 17022 17022
93 Japan 27487 A G 17022 17008 Lys32Glu
94 Japan 27488 A 17022 17022
95 Japan 27489 A 17022 17022
96 Japan 27490 G 17022 17022
97 Japan 27491 A G 17022 17021 Glu33Gly
98 Japan 27492 A 17022 17022
99 Japan 27493 C T 17022 17017 Pro34Ser
100 Japan 27494 C T 17022 17019 Pro34Leu
101 Japan 27495 T 17022 17022
102 Japan 27496 T 17022 17022
103 Japan 27497 G A 17022 17018 Cys35Tyr
104 Japan 27498 C T 17022 17021 Cys35Cys
105 Japan 27499 T 17022 17022
106 Japan 27500 C 17022 17022
107 Japan 27501 T G,C 17022 17020 Ser36Ser-p.Ser36Ser
108 Japan 27502 T 17022 17022
109 Japan 27503 C T 17022 17019 Ser37Phe
110 Japan 27504 T 17022 17022
111 Japan 27505 G C,T 17022 17004 Gly38*-p.Gly38Arg
112 Japan 27506 G T 17022 17016 Gly38Val
113 Japan 27507 A 17022 17022
114 Japan 27508 A 17022 17022
115 Japan 27509 C T 17022 16907 Thr39Ile
116 Japan 27510 A 17022 17022
117 Japan 27511 T 17022 17022
118 Japan 27512 A 17020 17020
119 Japan 27513 C T 17020 17017 Tyr40Tyr
120 Japan 27514 G T 17015 17014 Glu41*
121 Japan 27515 A 17015 17015
122 Japan 27516 G A 17015 17014 Glu41Glu
123 Japan 27517 G 17015 17015
124 Japan 27518 G A 17015 17014 Gly42Asp
125 Japan 27519 C 17015 17015
126 Japan 27520 A 17015 17015
127 Japan 27521 A 17015 17015
128 Japan 27522 T A 17015 17014 Asn43Lys
129 Japan 27523 T 17015 17015
130 Japan 27524 C T 17015 17011 Ser44Leu
131 Japan 27525 A 17015 17015
132 Japan 27526 C 17015 17015
133 Japan 27527 C T 17015 17007 Pro45Leu
134 Japan 27528 A 17015 17015
135 Japan 27529 T 17015 17015
136 Japan 27530 T 17015 17015
137 Japan 27531 T 17015 17015
138 Japan 27532 C T 17015 17010 His47Tyr
139 Japan 27533 A G 17015 17014 His47Arg
140 Japan 27534 T C 17015 17014 His47His
141 Japan 27535 C 17015 17015
142 Japan 27536 C 17015 17015
143 Japan 27537 T 17015 17015
144 Japan 27538 C 17015 17015
145 Japan 27539 T 17015 17015
146 Japan 27540 A 17015 17015
147 Japan 27541 G 17015 17015
148 Japan 27542 C 17014 17014
149 Japan 27543 T 17014 17014
150 Japan 27544 G 17014 17014
151 Japan 27545 A 17014 17014
152 Japan 27546 T 17014 17014
153 Japan 27547 A 17014 17014
154 Japan 27548 A 17014 17014
155 Japan 27549 C T 17014 17001 Asn52Asn
156 Japan 27550 A G 17014 17013 Lys53Glu
157 Japan 27551 A 17014 17014
158 Japan 27552 A T,G 17014 17012 Lys53Asn-p.Lys53Lys
159 Japan 27553 T C 17014 17013 Phe54Leu
160 Japan 27554 T 17014 17014
161 Japan 27555 T 17014 17014
162 Japan 27556 G T 17013 17009 Ala55Ser
163 Japan 27557 C 17013 17013
164 Japan 27558 A G 17013 17012 Ala55Ala
165 Japan 27559 C 17013 17013
166 Japan 27560 T 17013 17013
167 Japan 27561 G T 17013 16850 Leu56Leu
168 Japan 27562 A 17013 17013
169 Japan 27563 C 17013 17013
170 Japan 27564 T 17013 17013
171 Japan 27565 T 17013 17013
172 Japan 27566 G 17013 17013
173 Japan 27567 C T 17013 17011 Cys58Cys
174 Japan 27568 T 17013 17013
175 Japan 27569 T 17013 17013
176 Japan 27570 T 17013 17013
177 Japan 27571 A G 17013 17012 Ser60Gly
178 Japan 27572 G 17013 17013
179 Japan 27573 C T 17013 17012 Ser60Ser
180 Japan 27574 A 17002 17002
181 Japan 27575 C T 17002 16999 Thr61Ile
182 Japan 27576 T 17002 17002
183 Japan 27577 C T 17002 16998 Gln62*
184 Japan 27578 A 17002 17002
185 Japan 27579 A T,G 17002 16998 Gln62His-p.Gln62Gln
186 Japan 27580 T C 17002 16994 Phe63Leu
187 Japan 27581 T 17002 17002
188 Japan 27582 T A 17002 17001 Phe63Leu
189 Japan 27583 G T 17002 17001 Ala64Ser
190 Japan 27584 C 17002 17002
191 Japan 27585 T 17002 17002
192 Japan 27586 T 17002 17002
193 Japan 27587 T 17002 17002
194 Japan 27588 T 17002 17002
195 Japan 27589 G 17002 17002
196 Japan 27590 C T 17002 17001 Ala66Val
197 Japan 27591 T 17002 17002
198 Japan 27592 T 17002 17002
199 Japan 27593 G T 17002 17001 Cys67Phe
200 Japan 27594 T 17002 17002
201 Japan 27595 C 17002 17002
202 Japan 27596 C 17002 17002
203 Japan 27597 T C 17002 17001 Pro68Pro
204 Japan 27598 G 17002 17002
205 Japan 27599 A G 17002 17001 Asp69Gly
206 Japan 27600 C T 17002 16998 Asp69Asp
207 Japan 27601 G 17002 17002
208 Japan 27602 G A 17002 17000 Gly70Asp
209 Japan 27603 C T 17002 16996 Gly70Gly
210 Japan 27604 G T,A 17002 16993 Val71Leu-p.Val71Ile
211 Japan 27605 T 17002 17002
212 Japan 27606 A 17002 17002
213 Japan 27607 A 17002 17002
214 Japan 27608 A 17002 17002
215 Japan 27609 A 17002 17002
216 Japan 27610 C T 17002 17000 His73Tyr
217 Japan 27611 A 17002 17002
218 Japan 27612 C T 17002 17001 His73His
219 Japan 27613 G 17002 17002
220 Japan 27614 T 17002 17002
221 Japan 27615 C T 17002 17000 Val74Val
222 Japan 27616 T 17002 17002
223 Japan 27617 A 17002 17002
224 Japan 27618 T 17002 17002
225 Japan 27619 C 17001 17001
226 Japan 27620 A G 17001 16987 Gln76Arg
227 Japan 27621 G T,A 17001 16998 Gln76His-p.Gln76Gln
228 Japan 27622 T 17001 17001
229 Japan 27623 T 17001 17001
230 Japan 27624 A 17001 17001
231 Japan 27625 C T 17001 16997 Arg78Cys
232 Japan 27626 G 17001 17001
233 Japan 27627 T 17001 17001
234 Japan 27628 G T,A 17001 16999 Ala79Ser-p.Ala79Thr
235 Japan 27629 C T 17001 17000 Ala79Val
236 Japan 27630 C T,A 17001 16872 Ala79Ala-p.Ala79Ala
237 Japan 27631 A 17001 17001
238 Japan 27632 G 17001 17001
239 Japan 27633 A G 17001 16815 Arg80Arg
240 Japan 27634 T 17005 17005
241 Japan 27635 C 17005 17005
242 Japan 27636 A 17005 17005
243 Japan 27637 G 17005 17005
244 Japan 27638 T 17005 17005
245 Japan 27639 T 17005 17005
246 Japan 27640 T 17005 17005
247 Japan 27641 C T 17006 17003 Ser83Leu
248 Japan 27642 A 17006 17006
249 Japan 27643 C T 17006 17002 Pro84Ser
250 Japan 27644 C T,G 17006 17003 Pro84Leu-p.Pro84Arg
251 Japan 27645 T 17006 17006
252 Japan 27646 A 17006 17006
253 Japan 27647 A 17006 17006
254 Japan 27648 A 17006 17006
255 Japan 27649 C T,A 17006 17004 Leu86Met-p.Leu86Leu
256 Japan 27650 T 17005 17005
257 Japan 27651 G 17005 17005
258 Japan 27652 T C 17005 17004 Phe87Leu
259 Japan 27653 T 17005 17005
260 Japan 27654 C T 17005 17002 Phe87Phe
261 Japan 27655 A 17005 17005
262 Japan 27656 T 17005 17005
263 Japan 27657 C T 17005 17004 Ile88Ile
264 Japan 27658 A 17005 17005
265 Japan 27659 G T 17005 17004 Arg89Ile
266 Japan 27660 A C 17006 17004 Arg89Ser
267 Japan 27661 C 17006 17006
268 Japan 27662 A C 17006 17002 Gln90Pro
269 Japan 27663 A 17006 17006
270 Japan 27664 G 17006 17006
271 Japan 27665 A 17006 17006
272 Japan 27666 G 17006 17006
273 Japan 27667 G A,T 17007 17003 Glu92*-p.Glu92Lys
274 Japan 27668 A 17007 17007
275 Japan 27669 A 17007 17007
276 Japan 27670 G T,A 17007 17002 Val93Phe-p.Val93Ile
277 Japan 27671 T 17007 17007
278 Japan 27672 T C 17007 17004 Val93Val
279 Japan 27673 C 17007 17006
280 Japan 27674 A T 17007 17005 Gln94Leu
281 Japan 27675 A 17007 17006
282 Japan 27676 G C 17007 17005 Glu95Gln
283 Japan 27677 A G 17007 17004 Glu95Gly
284 Japan 27678 A 17007 17006
285 Japan 27679 C T 17007 17005 Leu96Phe
286 Japan 27680 T 17007 17006
287 Japan 27681 T 17007 17006
288 Japan 27682 T 17007 17006
289 Japan 27683 A G 17007 16941 Tyr97Cys
290 Japan 27684 C T 17006 17001 Tyr97Tyr
291 Japan 27685 T 17006 17005
292 Japan 27686 C T 17006 17004 Ser98Phe
293 Japan 27687 T 17006 17005
294 Japan 27688 C T 17006 17003 Pro99Ser
295 Japan 27689 C T 17006 17001 Pro99Leu
296 Japan 27690 A 17006 17005
297 Japan 27691 A 17006 17005
298 Japan 27692 T 17006 17005
299 Japan 27693 T C 17006 17002 Ile100Ile
300 Japan 27694 T 16964 16963
301 Japan 27695 T 16964 16963
302 Japan 27696 T 16964 16963
303 Japan 27697 C T 16964 16960 Leu102Phe
304 Japan 27698 T 16964 16963
305 Japan 27699 T 16964 16963
306 Japan 27700 A G 16964 16955 Ile103Val
307 Japan 27701 T C 16963 16958 Ile103Thr
308 Japan 27702 T 16963 16962
309 Japan 27703 G A 16963 16962 Val104Ile
310 Japan 27704 T 16963 16963
311 Japan 27705 T 16963 16963
312 Japan 27706 G T,A 16963 16961 Ala105Ser-p.Ala105Thr
313 Japan 27707 C T 16963 16961 Ala105Val
314 Japan 27708 G 16963 16963
315 Japan 27709 G A,T 16963 16956 Ala106Thr-p.Ala106Ser
316 Japan 27710 C 16963 16963
317 Japan 27711 A 16963 16963
318 Japan 27712 A C 16963 16956 Ile107Leu
319 Japan 27713 T C 16963 16959 Ile107Thr
320 Japan 27714 A 16963 16963
321 Japan 27715 G T 16963 16962 Val108Leu
322 Japan 27716 T 16963 16963
323 Japan 27717 G 16963 16963
324 Japan 27718 T 16963 16963
325 Japan 27719 T 16964 16964
326 Japan 27720 T C 16964 16932 Phe109Phe
327 Japan 27721 A 16964 16964
328 Japan 27722 T 16964 16964
329 Japan 27723 A 16964 16964
330 Japan 27724 A 16964 16964
331 Japan 27725 C 16964 16964
332 Japan 27726 A 16964 16964
333 Japan 27727 C T 16964 16963 Leu112Phe
334 Japan 27728 T 16964 16964
335 Japan 27729 T 16964 16964
336 Japan 27730 T 16964 16963
337 Japan 27731 G A 16964 16963 Cys113Tyr
338 Japan 27732 C 16964 16964
339 Japan 27733 T C 16964 16963 Phe114Leu
340 Japan 27734 T 16964 16964
341 Japan 27735 C T 16964 16963 Phe114Phe
342 Japan 27736 A 16964 16964
343 Japan 27737 C T 16964 16962 Thr115Ile
344 Japan 27738 A 16964 16964
345 Japan 27739 C T 16964 16960 Leu116Phe
346 Japan 27740 T C 16964 16960 Leu116Pro
347 Japan 27741 C T 16964 16963 Leu116Leu
348 Japan 27742 A 16964 16964
349 Japan 27743 A 16964 16964
350 Japan 27744 A 16964 16964
351 Japan 27745 A 16964 16964
352 Japan 27746 G 16964 16964
353 Japan 27747 A 16964 16964
354 Japan 27748 A 16964 16964
355 Japan 27749 A 16964 16964
356 Japan 27750 G T 16964 16963 Lys119Asn
357 Japan 27751 A 16964 16964
358 Japan 27752 C T 16963 16960 Thr120Ile
359 Japan 27753 A 16963 16963
360 Japan 27754 G T 16962 16961 Glu121*
361 Japan 27755 A C 16962 16961 Glu121Ala
362 Japan 27756 A 16962 16962
363 Japan 27757 T C 16962 16961 -p.Ter122Argext*?
364 Japan 27758 G 16955 16955
365 Japan 27759 A 16938 16938