National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jamaica 27394 A 12 12
1 Jamaica 27395 T 12 12
2 Jamaica 27396 G 12 12
3 Jamaica 27397 A 12 12
4 Jamaica 27398 A 12 12
5 Jamaica 27399 A 12 12
6 Jamaica 27400 A 12 12
7 Jamaica 27401 T 12 12
8 Jamaica 27402 T 12 12
9 Jamaica 27403 A 12 12
10 Jamaica 27404 T 12 12
11 Jamaica 27405 T 12 12
12 Jamaica 27406 C 12 12
13 Jamaica 27407 T 12 12
14 Jamaica 27408 T 12 12
15 Jamaica 27409 T 12 12
16 Jamaica 27410 T 12 12
17 Jamaica 27411 C 12 12
18 Jamaica 27412 T 12 12
19 Jamaica 27413 T 12 12
20 Jamaica 27414 G 12 12
21 Jamaica 27415 G 12 12
22 Jamaica 27416 C 12 12
23 Jamaica 27417 A 12 12
24 Jamaica 27418 C 12 12
25 Jamaica 27419 T 12 12
26 Jamaica 27420 G 12 12
27 Jamaica 27421 A 12 12
28 Jamaica 27422 T 12 12
29 Jamaica 27423 A 12 12
30 Jamaica 27424 A 12 12
31 Jamaica 27425 C 12 12
32 Jamaica 27426 A 12 12
33 Jamaica 27427 C 12 12
34 Jamaica 27428 T 12 12
35 Jamaica 27429 C 12 12
36 Jamaica 27430 G 12 12
37 Jamaica 27431 C 12 12
38 Jamaica 27432 T 12 12
39 Jamaica 27433 A 12 12
40 Jamaica 27434 C 12 12
41 Jamaica 27435 T 12 12
42 Jamaica 27436 T 12 12
43 Jamaica 27437 G 12 12
44 Jamaica 27438 T 12 12
45 Jamaica 27439 G 12 12
46 Jamaica 27440 A 12 12
47 Jamaica 27441 G 12 12
48 Jamaica 27442 C 12 12
49 Jamaica 27443 T 12 12
50 Jamaica 27444 T 12 12
51 Jamaica 27445 T 12 12
52 Jamaica 27446 A 12 12
53 Jamaica 27447 T 12 12
54 Jamaica 27448 C 12 12
55 Jamaica 27449 A 12 12
56 Jamaica 27450 C 12 12
57 Jamaica 27451 T 12 12
58 Jamaica 27452 A 12 12
59 Jamaica 27453 C 12 12
60 Jamaica 27454 C 12 12
61 Jamaica 27455 A 12 12
62 Jamaica 27456 A 12 12
63 Jamaica 27457 G 12 12
64 Jamaica 27458 A 12 12
65 Jamaica 27459 G 12 12
66 Jamaica 27460 T 12 12
67 Jamaica 27461 G 12 12
68 Jamaica 27462 T 12 12
69 Jamaica 27463 G 12 12
70 Jamaica 27464 T 12 12
71 Jamaica 27465 T 12 12
72 Jamaica 27466 A 12 12
73 Jamaica 27467 G 12 12
74 Jamaica 27468 A 12 12
75 Jamaica 27469 G 12 12
76 Jamaica 27470 G 12 12
77 Jamaica 27471 T 12 12
78 Jamaica 27472 A 12 12
79 Jamaica 27473 C 12 12
80 Jamaica 27474 A 12 12
81 Jamaica 27475 A 12 12
82 Jamaica 27476 C 12 12
83 Jamaica 27477 A 12 12
84 Jamaica 27478 G 12 12
85 Jamaica 27479 T 12 12
86 Jamaica 27480 A 12 12
87 Jamaica 27481 C 12 12
88 Jamaica 27482 T 12 12
89 Jamaica 27483 T 12 12
90 Jamaica 27484 T 12 12
91 Jamaica 27485 T 12 12
92 Jamaica 27486 A 12 12
93 Jamaica 27487 A 12 12
94 Jamaica 27488 A 12 12
95 Jamaica 27489 A 12 12
96 Jamaica 27490 G 12 12
97 Jamaica 27491 A 12 12
98 Jamaica 27492 A 12 12
99 Jamaica 27493 C 12 12
100 Jamaica 27494 C 12 12
101 Jamaica 27495 T 12 12
102 Jamaica 27496 T 12 12
103 Jamaica 27497 G 12 12
104 Jamaica 27498 C 12 12
105 Jamaica 27499 T 12 12
106 Jamaica 27500 C 12 12
107 Jamaica 27501 T 12 12
108 Jamaica 27502 T 12 12
109 Jamaica 27503 C 12 12
110 Jamaica 27504 T 12 12
111 Jamaica 27505 G 12 12
112 Jamaica 27506 G 12 12
113 Jamaica 27507 A 12 12
114 Jamaica 27508 A 12 12
115 Jamaica 27509 C 12 12
116 Jamaica 27510 A 12 12
117 Jamaica 27511 T 12 12
118 Jamaica 27512 A 8 8
119 Jamaica 27513 C 8 8
120 Jamaica 27514 G 8 8
121 Jamaica 27515 A 8 8
122 Jamaica 27516 G 8 8
123 Jamaica 27517 G 8 8
124 Jamaica 27518 G 8 8
125 Jamaica 27519 C 8 8
126 Jamaica 27520 A 8 8
127 Jamaica 27521 A 8 8
128 Jamaica 27522 T 8 8
129 Jamaica 27523 T 8 8
130 Jamaica 27524 C 8 8
131 Jamaica 27525 A 8 8
132 Jamaica 27526 C 8 8
133 Jamaica 27527 C 8 8
134 Jamaica 27528 A 8 8
135 Jamaica 27529 T 8 8
136 Jamaica 27530 T 8 8
137 Jamaica 27531 T 8 8
138 Jamaica 27532 C 8 8
139 Jamaica 27533 A 8 8
140 Jamaica 27534 T 8 8
141 Jamaica 27535 C 8 8
142 Jamaica 27536 C 8 8
143 Jamaica 27537 T 8 8
144 Jamaica 27538 C 8 8
145 Jamaica 27539 T 8 8
146 Jamaica 27540 A 8 8
147 Jamaica 27541 G 8 8
148 Jamaica 27542 C 8 8
149 Jamaica 27543 T 8 8
150 Jamaica 27544 G 8 8
151 Jamaica 27545 A 8 8
152 Jamaica 27546 T 8 8
153 Jamaica 27547 A 8 8
154 Jamaica 27548 A 8 8
155 Jamaica 27549 C 8 8
156 Jamaica 27550 A 8 8
157 Jamaica 27551 A 8 8
158 Jamaica 27552 A 8 8
159 Jamaica 27553 T 8 8
160 Jamaica 27554 T 8 8
161 Jamaica 27555 T 8 8
162 Jamaica 27556 G 8 8
163 Jamaica 27557 C 8 8
164 Jamaica 27558 A 8 8
165 Jamaica 27559 C 8 8
166 Jamaica 27560 T 8 8
167 Jamaica 27561 G 8 8
168 Jamaica 27562 A 8 8
169 Jamaica 27563 C 8 8
170 Jamaica 27564 T 8 8
171 Jamaica 27565 T 8 8
172 Jamaica 27566 G 8 8
173 Jamaica 27567 C 8 8
174 Jamaica 27568 T 8 8
175 Jamaica 27569 T 8 8
176 Jamaica 27570 T 8 8
177 Jamaica 27571 A 8 8
178 Jamaica 27572 G 8 8
179 Jamaica 27573 C 8 8
180 Jamaica 27574 A 8 8
181 Jamaica 27575 C 8 8
182 Jamaica 27576 T 8 8
183 Jamaica 27577 C 8 8
184 Jamaica 27578 A 8 8
185 Jamaica 27579 A 8 8
186 Jamaica 27580 T 8 8
187 Jamaica 27581 T 8 8
188 Jamaica 27582 T 8 8
189 Jamaica 27583 G 8 8
190 Jamaica 27584 C 8 8
191 Jamaica 27585 T 8 8
192 Jamaica 27586 T 8 8
193 Jamaica 27587 T 8 8
194 Jamaica 27588 T 8 8
195 Jamaica 27589 G 8 8
196 Jamaica 27590 C 8 8
197 Jamaica 27591 T 8 8
198 Jamaica 27592 T 8 8
199 Jamaica 27593 G 8 8
200 Jamaica 27594 T 8 8
201 Jamaica 27595 C 8 8
202 Jamaica 27596 C 8 8
203 Jamaica 27597 T 8 8
204 Jamaica 27598 G 8 8
205 Jamaica 27599 A 8 8
206 Jamaica 27600 C 8 8
207 Jamaica 27601 G 8 8
208 Jamaica 27602 G 8 8
209 Jamaica 27603 C 8 8
210 Jamaica 27604 G 8 8
211 Jamaica 27605 T 8 8
212 Jamaica 27606 A 8 8
213 Jamaica 27607 A 8 8
214 Jamaica 27608 A 8 8
215 Jamaica 27609 A 8 8
216 Jamaica 27610 C 8 8
217 Jamaica 27611 A 8 8
218 Jamaica 27612 C 8 8
219 Jamaica 27613 G 8 8
220 Jamaica 27614 T 8 8
221 Jamaica 27615 C 8 8
222 Jamaica 27616 T 8 8
223 Jamaica 27617 A 8 8
224 Jamaica 27618 T 8 8
225 Jamaica 27619 C 8 8
226 Jamaica 27620 A 8 8
227 Jamaica 27621 G 8 8
228 Jamaica 27622 T 8 8
229 Jamaica 27623 T 8 8
230 Jamaica 27624 A 8 8
231 Jamaica 27625 C 8 8
232 Jamaica 27626 G 8 8
233 Jamaica 27627 T 8 8
234 Jamaica 27628 G 8 8
235 Jamaica 27629 C 8 8
236 Jamaica 27630 C 8 8
237 Jamaica 27631 A 8 8
238 Jamaica 27632 G 8 8
239 Jamaica 27633 A 8 8
240 Jamaica 27634 T 8 8
241 Jamaica 27635 C 8 8
242 Jamaica 27636 A 8 8
243 Jamaica 27637 G 8 8
244 Jamaica 27638 T 8 8
245 Jamaica 27639 T 8 8
246 Jamaica 27640 T 8 8
247 Jamaica 27641 C 8 8
248 Jamaica 27642 A 8 8
249 Jamaica 27643 C 8 8
250 Jamaica 27644 C 8 8
251 Jamaica 27645 T 8 8
252 Jamaica 27646 A 8 8
253 Jamaica 27647 A 8 8
254 Jamaica 27648 A 8 8
255 Jamaica 27649 C 8 8
256 Jamaica 27650 T 8 8
257 Jamaica 27651 G 8 8
258 Jamaica 27652 T 8 8
259 Jamaica 27653 T 8 8
260 Jamaica 27654 C 8 8
261 Jamaica 27655 A 8 8
262 Jamaica 27656 T 8 8
263 Jamaica 27657 C 8 8
264 Jamaica 27658 A 8 8
265 Jamaica 27659 G 8 8
266 Jamaica 27660 A 8 8
267 Jamaica 27661 C 8 8
268 Jamaica 27662 A 8 8
269 Jamaica 27663 A 8 8
270 Jamaica 27664 G 8 8
271 Jamaica 27665 A 8 8
272 Jamaica 27666 G 8 8
273 Jamaica 27667 G 8 8
274 Jamaica 27668 A 8 8
275 Jamaica 27669 A 8 8
276 Jamaica 27670 G 8 8
277 Jamaica 27671 T 8 8
278 Jamaica 27672 T 8 8
279 Jamaica 27673 C 8 8
280 Jamaica 27674 A 8 8
281 Jamaica 27675 A 8 8
282 Jamaica 27676 G 8 8
283 Jamaica 27677 A 8 8
284 Jamaica 27678 A 8 8
285 Jamaica 27679 C 8 8
286 Jamaica 27680 T 8 8
287 Jamaica 27681 T 8 8
288 Jamaica 27682 T 8 8
289 Jamaica 27683 A 8 8
290 Jamaica 27684 C 8 8
291 Jamaica 27685 T 8 8
292 Jamaica 27686 C 8 8
293 Jamaica 27687 T 8 8
294 Jamaica 27688 C 8 8
295 Jamaica 27689 C 8 8
296 Jamaica 27690 A 8 8
297 Jamaica 27691 A 8 8
298 Jamaica 27692 T 8 8
299 Jamaica 27693 T 8 8
300 Jamaica 27694 T 8 8
301 Jamaica 27695 T 8 8
302 Jamaica 27696 T 8 8
303 Jamaica 27697 C 8 8
304 Jamaica 27698 T 8 8
305 Jamaica 27699 T 8 8
306 Jamaica 27700 A 8 8
307 Jamaica 27701 T 8 8
308 Jamaica 27702 T 8 8
309 Jamaica 27703 G 8 8
310 Jamaica 27704 T 8 8
311 Jamaica 27705 T 8 8
312 Jamaica 27706 G 8 8
313 Jamaica 27707 C 8 8
314 Jamaica 27708 G 8 8
315 Jamaica 27709 G 8 8
316 Jamaica 27710 C 8 8
317 Jamaica 27711 A 8 8
318 Jamaica 27712 A 8 8
319 Jamaica 27713 T 8 8
320 Jamaica 27714 A 8 8
321 Jamaica 27715 G 8 8
322 Jamaica 27716 T 8 8
323 Jamaica 27717 G 8 8
324 Jamaica 27718 T 8 8
325 Jamaica 27719 T 8 8
326 Jamaica 27720 T 8 8
327 Jamaica 27721 A 8 8
328 Jamaica 27722 T 8 8
329 Jamaica 27723 A 8 8
330 Jamaica 27724 A 8 8
331 Jamaica 27725 C 8 8
332 Jamaica 27726 A 8 8
333 Jamaica 27727 C 8 8
334 Jamaica 27728 T 8 8
335 Jamaica 27729 T 8 8
336 Jamaica 27730 T 8 8
337 Jamaica 27731 G 8 8
338 Jamaica 27732 C 8 8
339 Jamaica 27733 T 8 8
340 Jamaica 27734 T 8 8
341 Jamaica 27735 C 8 8
342 Jamaica 27736 A 8 8
343 Jamaica 27737 C 8 8
344 Jamaica 27738 A 8 8
345 Jamaica 27739 C 8 8
346 Jamaica 27740 T 8 8
347 Jamaica 27741 C 8 8
348 Jamaica 27742 A 8 8
349 Jamaica 27743 A 8 8
350 Jamaica 27744 A 8 8
351 Jamaica 27745 A 8 8
352 Jamaica 27746 G 8 8
353 Jamaica 27747 A 8 8
354 Jamaica 27748 A 8 8
355 Jamaica 27749 A 8 8
356 Jamaica 27750 G 8 8
357 Jamaica 27751 A 8 8
358 Jamaica 27752 C 8 8
359 Jamaica 27753 A 8 8
360 Jamaica 27754 G 8 8
361 Jamaica 27755 A 8 8
362 Jamaica 27756 A 8 8
363 Jamaica 27757 T 8 8
364 Jamaica 27758 G 8 8
365 Jamaica 27759 A 8 8