National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                             1        
-     370                                      
?                                            
A     27 2                       1         5  
C     18                                      
D     6     1                                
E 2   24                                      
F     30         1         2               1  
G 1   12   1       1                       1  
H     9             1         1             2
I     25                                   1  
K     21                       1              
L     45         1   1 1   5     1            
M     6               1 1                    
N     6                 1     1              
P     18                   1         1 1      
Q 1   15             2     1       1          
R     15   1           1             1        
S     21                   3           1     1
T     30               6                 3    
V     24 1       2     1   2               2  
Y     15     2                               3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 27394 A 2960 2960
1 Italy 27395 T 2960 2960
2 Italy 27396 G T 2960 2959 Met1?
3 Italy 27397 A 2960 2960
4 Italy 27398 A 2960 2960
5 Italy 27399 A 2960 2960
6 Italy 27400 A 2960 2960
7 Italy 27401 T 2960 2960
8 Italy 27402 T 2960 2960
9 Italy 27403 A 2960 2960
10 Italy 27404 T 2960 2960
11 Italy 27405 T 2960 2960
12 Italy 27406 C T 2960 2959 Leu5Phe
13 Italy 27407 T 2960 2960
14 Italy 27408 T C 2960 2959 Leu5Leu
15 Italy 27409 T G,C 2960 2956 Phe6Val-p.Phe6Leu
16 Italy 27410 T 2960 2960
17 Italy 27411 C 2960 2960
18 Italy 27412 T 2960 2960
19 Italy 27413 T 2960 2960
20 Italy 27414 G 2960 2960
21 Italy 27415 G 2960 2960
22 Italy 27416 C T 2960 2955 Ala8Val
23 Italy 27417 A 2960 2960
24 Italy 27418 C 2960 2960
25 Italy 27419 T 2960 2960
26 Italy 27420 G 2960 2960
27 Italy 27421 A 2960 2960
28 Italy 27422 T 2960 2960
29 Italy 27423 A 2960 2960
30 Italy 27424 A 2960 2960
31 Italy 27425 C 2960 2960
32 Italy 27426 A T,G 2960 2958 Thr11Thr-p.Thr11Thr
33 Italy 27427 C 2960 2960
34 Italy 27428 T 2960 2960
35 Italy 27429 C 2960 2960
36 Italy 27430 G 2960 2960
37 Italy 27431 C 2960 2960
38 Italy 27432 T 2960 2959
39 Italy 27433 A 2960 2959
40 Italy 27434 C T 2960 2957 Thr14Ile
41 Italy 27435 T 2960 2959
42 Italy 27436 T 2960 2959
43 Italy 27437 G 2960 2959
44 Italy 27438 T 2960 2959
45 Italy 27439 G 2960 2959
46 Italy 27440 A 2960 2959
47 Italy 27441 G 2960 2959
48 Italy 27442 C 2960 2959
49 Italy 27443 T 2960 2959
50 Italy 27444 T 2960 2959
51 Italy 27445 T G 2960 2958 Tyr18Asp
52 Italy 27446 A 2960 2959
53 Italy 27447 T 2960 2959
54 Italy 27448 C 2960 2959
55 Italy 27449 A 2960 2959
56 Italy 27450 C 2960 2959
57 Italy 27451 T 2960 2959
58 Italy 27452 A 2960 2959
59 Italy 27453 C 2960 2959
60 Italy 27454 C 2960 2959
61 Italy 27455 A 2960 2959
62 Italy 27456 A G 2960 2958 Gln21Gln
63 Italy 27457 G 2960 2959
64 Italy 27458 A 2960 2960
65 Italy 27459 G 2960 2960
66 Italy 27460 T 2960 2960
67 Italy 27461 G 2960 2960
68 Italy 27462 T 2960 2960
69 Italy 27463 G 2960 2960
70 Italy 27464 T C 2960 2959 Val24Ala
71 Italy 27465 T 2960 2960
72 Italy 27466 A 2960 2960
73 Italy 27467 G 2960 2960
74 Italy 27468 A G 2960 2944 Arg25Arg
75 Italy 27469 G 2960 2959
76 Italy 27470 G 2960 2959
77 Italy 27471 T 2960 2959
78 Italy 27472 A 2960 2959
79 Italy 27473 C 2960 2959
80 Italy 27474 A 2960 2959
81 Italy 27475 A 2960 2959
82 Italy 27476 C T 2960 2957 Thr28Ile
83 Italy 27477 A 2960 2959
84 Italy 27478 G T 2960 2956 Val29Leu
85 Italy 27479 T 2960 2958
86 Italy 27480 A 2960 2958
87 Italy 27481 C 2960 2959
88 Italy 27482 T 2960 2958
89 Italy 27483 T 2960 2959
90 Italy 27484 T C 2960 2958 Leu31Leu
91 Italy 27485 T 2960 2960
92 Italy 27486 A 2960 2959
93 Italy 27487 A 2960 2959
94 Italy 27488 A 2960 2960
95 Italy 27489 A 2960 2960
96 Italy 27490 G 2960 2960
97 Italy 27491 A 2960 2960
98 Italy 27492 A 2960 2960
99 Italy 27493 C 2960 2960
100 Italy 27494 C 2960 2960
101 Italy 27495 T 2960 2960
102 Italy 27496 T 2960 2960
103 Italy 27497 G 2960 2960
104 Italy 27498 C 2960 2960
105 Italy 27499 T 2960 2958
106 Italy 27500 C 2960 2960
107 Italy 27501 T G 2961 2960 Ser36Ser
108 Italy 27502 T 2961 2961
109 Italy 27503 C A 2961 2960 Ser37Tyr
110 Italy 27504 T 2961 2959
111 Italy 27505 G T 2961 2958 Gly38*
112 Italy 27506 G T 2961 2960 Gly38Val
113 Italy 27507 A 2961 2961
114 Italy 27508 A 2961 2961
115 Italy 27509 C T 2961 2959 Thr39Ile
116 Italy 27510 A 2961 2961
117 Italy 27511 T 2961 2961
118 Italy 27512 A 2960 2960
119 Italy 27513 C T 2960 2957 Tyr40Tyr
120 Italy 27514 G 2958 2958
121 Italy 27515 A 2958 2958
122 Italy 27516 G 2958 2958
123 Italy 27517 G 2958 2958
124 Italy 27518 G 2958 2958
125 Italy 27519 C 2958 2958
126 Italy 27520 A 2958 2958
127 Italy 27521 A 2958 2958
128 Italy 27522 T 2958 2958
129 Italy 27523 T 2958 2958
130 Italy 27524 C T 2958 2957 Ser44Leu
131 Italy 27525 A 2958 2958
132 Italy 27526 C 2958 2958
133 Italy 27527 C G,T 2958 2955 Pro45Arg-p.Pro45Leu
134 Italy 27528 A 2956 2956
135 Italy 27529 T 2956 2956
136 Italy 27530 T 2956 2956
137 Italy 27531 T 2956 2956
138 Italy 27532 C T,A 2956 2953 His47Tyr-p.His47Asn
139 Italy 27533 A 2956 2956
140 Italy 27534 T C 2955 2954 His47His
141 Italy 27535 C 2955 2955
142 Italy 27536 C 2955 2955
143 Italy 27537 T 2954 2954
144 Italy 27538 C 2954 2954
145 Italy 27539 T 2954 2954
146 Italy 27540 A 2954 2954
147 Italy 27541 G 2954 2954
148 Italy 27542 C T 2954 2953 Ala50Val
149 Italy 27543 T 2954 2954
150 Italy 27544 G 2954 2954
151 Italy 27545 A 2954 2954
152 Italy 27546 T 2954 2954
153 Italy 27547 A 2954 2954
154 Italy 27548 A 2954 2954
155 Italy 27549 C A,T 2954 2947 Asn52Lys-p.Asn52Asn
156 Italy 27550 A 2954 2954
157 Italy 27551 A 2954 2954
158 Italy 27552 A 2954 2954
159 Italy 27553 T 2954 2954
160 Italy 27554 T 2954 2954
161 Italy 27555 T 2954 2954
162 Italy 27556 G 2954 2954
163 Italy 27557 C 2954 2954
164 Italy 27558 A 2954 2954
165 Italy 27559 C 2954 2954
166 Italy 27560 T 2954 2954
167 Italy 27561 G 2954 2954
168 Italy 27562 A 2954 2954
169 Italy 27563 C 2954 2954
170 Italy 27564 T 2954 2954
171 Italy 27565 T 2954 2954
172 Italy 27566 G 2954 2954
173 Italy 27567 C 2954 2954
174 Italy 27568 T 2954 2954
175 Italy 27569 T 2954 2954
176 Italy 27570 T 2954 2954
177 Italy 27571 A 2954 2954
178 Italy 27572 G 2954 2954
179 Italy 27573 C 2954 2954
180 Italy 27574 A 2954 2954
181 Italy 27575 C T 2954 2953 Thr61Ile
182 Italy 27576 T G 2954 2953 Thr61Thr
183 Italy 27577 C 2954 2954
184 Italy 27578 A 2954 2954
185 Italy 27579 A 2954 2954
186 Italy 27580 T 2954 2954
187 Italy 27581 T 2954 2954
188 Italy 27582 T 2954 2953
189 Italy 27583 G 2954 2953
190 Italy 27584 C T 2954 2952 Ala64Val
191 Italy 27585 T 2954 2952
192 Italy 27586 T C 2954 2952 Phe65Leu
193 Italy 27587 T 2954 2953
194 Italy 27588 T 2954 2954
195 Italy 27589 G 2954 2954
196 Italy 27590 C 2954 2954
197 Italy 27591 T 2954 2954
198 Italy 27592 T 2954 2954
199 Italy 27593 G 2954 2954
200 Italy 27594 T 2954 2954
201 Italy 27595 C 2954 2954
202 Italy 27596 C 2954 2954
203 Italy 27597 T 2954 2954
204 Italy 27598 G 2954 2954
205 Italy 27599 A 2954 2954
206 Italy 27600 C T 2954 2953 Asp69Asp
207 Italy 27601 G T 2954 2952 Gly70Cys
208 Italy 27602 G 2954 2954
209 Italy 27603 C T 2954 2941 Gly70Gly
210 Italy 27604 G T,A 2954 2952 Val71Leu-p.Val71Ile
211 Italy 27605 T 2954 2954
212 Italy 27606 A T 2954 2953 Val71Val
213 Italy 27607 A 2954 2954
214 Italy 27608 A 2954 2954
215 Italy 27609 A 2954 2952
216 Italy 27610 C T 2954 2948 His73Tyr
217 Italy 27611 A 2954 2950
218 Italy 27612 C 2954 2950
219 Italy 27613 G 2954 2950
220 Italy 27614 T 2954 2950
221 Italy 27615 C 2954 2950
222 Italy 27616 T 2954 2950
223 Italy 27617 A 2954 2950
224 Italy 27618 T C 2952 2941 Tyr75Tyr
225 Italy 27619 C 2952 2948
226 Italy 27620 A 2952 2948
227 Italy 27621 G T 2952 2938 Gln76His
228 Italy 27622 T 2951 2946
229 Italy 27623 T 2951 2948
230 Italy 27624 A 2951 2951
231 Italy 27625 C T 2951 2950 Arg78Cys
232 Italy 27626 G 2951 2951
233 Italy 27627 T 2951 2951
234 Italy 27628 G C 2951 2947 Ala79Pro
235 Italy 27629 C 2951 2951
236 Italy 27630 C T 2951 2949 Ala79Ala
237 Italy 27631 A 2951 2951
238 Italy 27632 G T 2951 2930 Arg80Ile
239 Italy 27633 A 2951 2951
240 Italy 27634 T 2953 2953
241 Italy 27635 C T 2953 2952 Ser81Leu
242 Italy 27636 A 2953 2953
243 Italy 27637 G 2953 2953
244 Italy 27638 T 2953 2953
245 Italy 27639 T 2953 2952
246 Italy 27640 T 2953 2952
247 Italy 27641 C T 2953 2950 Ser83Leu
248 Italy 27642 A 2953 2953
249 Italy 27643 C T 2953 2949 Pro84Ser
250 Italy 27644 C 2953 2953
251 Italy 27645 T 2953 2953
252 Italy 27646 A 2953 2953
253 Italy 27647 A 2953 2953
254 Italy 27648 A 2953 2953
255 Italy 27649 C T 2953 2949 Leu86Leu
256 Italy 27650 T 2953 2953
257 Italy 27651 G 2953 2953
258 Italy 27652 T 2953 2952
259 Italy 27653 T 2953 2952
260 Italy 27654 C T 2953 2950 Phe87Phe
261 Italy 27655 A G 2953 2951 Ile88Val
262 Italy 27656 T 2953 2951
263 Italy 27657 C 2953 2951
264 Italy 27658 A 2953 2951
265 Italy 27659 G 2953 2951
266 Italy 27660 A 2953 2952
267 Italy 27661 C T 2953 2951 Gln90*
268 Italy 27662 A 2953 2952
269 Italy 27663 A 2953 2952
270 Italy 27664 G 2953 2952
271 Italy 27665 A 2953 2952
272 Italy 27666 G 2953 2952
273 Italy 27667 G 2953 2953
274 Italy 27668 A 2953 2953
275 Italy 27669 A 2953 2953
276 Italy 27670 G T 2953 2952 Val93Phe
277 Italy 27671 T 2953 2953
278 Italy 27672 T 2953 2953
279 Italy 27673 C 2953 2953
280 Italy 27674 A T 2952 2947 Gln94Leu
281 Italy 27675 A C 2952 2951 Gln94His
282 Italy 27676 G T 2953 2952 Glu95*
283 Italy 27677 A 2953 2953
284 Italy 27678 A 2953 2953
285 Italy 27679 C 2953 2953
286 Italy 27680 T C,A 2953 2942 Leu96Pro-p.Leu96His
287 Italy 27681 T A 2953 2952 Leu96Leu
288 Italy 27682 T G 2953 2952 Tyr97Asp
289 Italy 27683 A 2953 2953
290 Italy 27684 C T 2953 2951 Tyr97Tyr
291 Italy 27685 T 2953 2953
292 Italy 27686 C 2953 2953
293 Italy 27687 T 2953 2953
294 Italy 27688 C 2953 2953
295 Italy 27689 C 2952 2952
296 Italy 27690 A 2952 2952
297 Italy 27691 A 2952 2952
298 Italy 27692 T 2952 2952
299 Italy 27693 T 2952 2952
300 Italy 27694 T 2952 2952
301 Italy 27695 T 2952 2952
302 Italy 27696 T 2952 2952
303 Italy 27697 C 2952 2951
304 Italy 27698 T 2952 2952
305 Italy 27699 T 2952 2952
306 Italy 27700 A 2952 2952
307 Italy 27701 T 2952 2952
308 Italy 27702 T 2952 2952
309 Italy 27703 G T 2952 2946 Val104Phe
310 Italy 27704 T 2952 2952
311 Italy 27705 T 2952 2952
312 Italy 27706 G 2952 2952
313 Italy 27707 C T 2952 2951 Ala105Val
314 Italy 27708 G T 2952 2951 Ala105Ala
315 Italy 27709 G 2952 2952
316 Italy 27710 C T 2952 2951 Ala106Val
317 Italy 27711 A 2952 2951
318 Italy 27712 A 2951 2950
319 Italy 27713 T 2951 2950
320 Italy 27714 A 2951 2950
321 Italy 27715 G 2951 2950
322 Italy 27716 T 2951 2950
323 Italy 27717 G T 2951 2946 Val108Val
324 Italy 27718 T 2951 2950
325 Italy 27719 T 2951 2950
326 Italy 27720 T 2951 2950
327 Italy 27721 A 2951 2950
328 Italy 27722 T 2952 2951
329 Italy 27723 A 2952 2951
330 Italy 27724 A 2952 2949
331 Italy 27725 C 2952 2949
332 Italy 27726 A 2951 2948
333 Italy 27727 C 2951 2948
334 Italy 27728 T 2951 2947
335 Italy 27729 T 2951 2948
336 Italy 27730 T 2951 2948
337 Italy 27731 G 2951 2951
338 Italy 27732 C 2951 2950
339 Italy 27733 T 2951 2951
340 Italy 27734 T 2951 2951
341 Italy 27735 C 2951 2951
342 Italy 27736 A 2951 2951
343 Italy 27737 C T 2951 2950 Thr115Ile
344 Italy 27738 A 2951 2951
345 Italy 27739 C A 2951 2949 Leu116Ile
346 Italy 27740 T 2951 2951
347 Italy 27741 C T 2951 2950 Leu116Leu
348 Italy 27742 A 2951 2951
349 Italy 27743 A 2951 2951
350 Italy 27744 A 2951 2951
351 Italy 27745 A 2951 2951
352 Italy 27746 G 2951 2951
353 Italy 27747 A 2951 2951
354 Italy 27748 A 2951 2951
355 Italy 27749 A 2951 2951
356 Italy 27750 G T 2951 2950 Lys119Asn
357 Italy 27751 A 2951 2951
358 Italy 27752 C T 2951 2948 Thr120Ile
359 Italy 27753 A 2950 2949
360 Italy 27754 G T 2949 2945 Glu121*
361 Italy 27755 A 2949 2949
362 Italy 27756 A 2949 2949
363 Italy 27757 T A 2949 2948 -p.Ter122Argext*?
364 Italy 27758 G 2948 2948
365 Italy 27759 A 2948 2948